Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0025916

Physical Location & Seq

Genomic Coordinates Reverse (-)

64339382 .. 64340038

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG433200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGACTGGTCATCTTCTAGTAAAAAGTGATGTTTACAGCTATGGTGTAGTCCTTCTTGAACTCCTGACAGGACGAAAGCCGGTGGATCTGTCACAACCTTCAGGTCAAGAGAACCTTGTTGCTTGGGCTCGTCCTCTCCTCACCAGCAGAGAGGGTCTAGAATCAATAATAGACCCGGCGTTGAAATCTGATATGATCACATGGGACAGTGTAACCAAGGTAGCAGCAATTGCTTCAATGTGTATACCACCAGAAGTATCTCACCACCCGTTTATGGGCGAGGTTGTTCAGGCCTTTAAGCTTGTATGCAATGAGTTCAGAGAAACAAAAGAACTTGCAGGTTCAACAAGTTGTGGCCAAGACGATGATGATCTCTGCATTCATACAGATAGTGGTAATCTTGAAGTGGCAGAATCACAGCTTCAGATGCCTGTATTCGGGGCTGGCCATGGCACTAAAATACCCTTAACGTCAGATTTTTTGAGTCCAAGTGTGGGATTTGAGGTTGAGGGGCAGGAAGTTGGATCTTTTAGGAGGTACTCTAGTTCAGGGCCTTTGAGGACTGGTAGGAGAAGGCAATTTTGGCAAAGACTAAGGACTTTGTCTAGAGGAAGTATGAGTGAACATGGATCCTCATTGAAATTGTGGCCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

218

Amino Acids

23.95

Weight (kDa)

5.69

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025916)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug02G0380300
rosa_samantha	Rh2AG433200 Rh2CG419000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	244
AclWI	GGATC	4 cut(s)	93, 532, 624, 637
AcoI	YGGCCR	3 cut(s)	355, 445, 647
AcuI	CTGAAG	2 cut(s)	84, 407
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	4 cut(s)	274, 275, 437, 494
AgsI	TTSAA	6 cut(s)	59, 184, 237, 345, 404, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	565, 597
AluBI	AGCT	3 cut(s)	39, 301, 421
AluI	AGCT	3 cut(s)	39, 301, 421
AlwI	GGATC	4 cut(s)	93, 532, 624, 637
AoxI	GGCC	5 cut(s)	291, 355, 445, 551, 647
ApeKI	GCWGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	133, 254
BaeI	ACNNNNGTAYC	2 cut(s)	529, 562
BalI	TGGCCA	3 cut(s)	357, 447, 649
BamHI	GGATCC	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	176
BfaI	CTAG	4 cut(s)	17, 158, 543, 606
BfuAI	ACCTGC	1 cut(s)	329
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	216, 448
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 275, 437, 494
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	10, 568
Bse3DI	GCAATG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	216, 448
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	4 cut(s)	274, 275, 437, 494
BseMI	GCAATG	1 cut(s)	316
BseNI	ACTGG	2 cut(s)	10, 568
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	236
BshFI	GGCC	5 cut(s)	293, 357, 447, 553, 649
BsiSI	CCGG	2 cut(s)	80, 176
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	4 cut(s)	274, 275, 437, 494
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	5 cut(s)	293, 357, 447, 553, 649
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	5 cut(s)	85, 195, 370, 524, 629
Bsp19I	CCATGG	1 cut(s)	448
BspANI	GGCC	5 cut(s)	293, 357, 447, 553, 649
BspLI	GGNNCC	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	4 cut(s)	93, 532, 624, 637
BsrDI	GCAATG	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	10, 568
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	2 cut(s)	216, 448
BssMI	GATC	5 cut(s)	85, 195, 370, 524, 629
BssNAI	GTATAC	1 cut(s)	245
BssT1I	CCWWGG	2 cut(s)	216, 448
Bst1107I	GTATAC	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	593
BstDSI	CCRYGG	1 cut(s)	448
BstKTI	GATC	5 cut(s)	88, 198, 373, 527, 632
BstMBI	GATC	5 cut(s)	85, 195, 370, 524, 629
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 427, 583
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	236
BstX2I	RGATCY	3 cut(s)	85, 524, 629
BstYI	RGATCY	3 cut(s)	85, 524, 629
BstZ17I	GTATAC	1 cut(s)	245
BsuRI	GGCC	5 cut(s)	293, 357, 447, 553, 649
BtgI	CCRYGG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	3 cut(s)	201, 449, 626
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	1 cut(s)	593
DpnI	GATC	5 cut(s)	87, 197, 372, 526, 631
DpnII	GATC	5 cut(s)	85, 195, 370, 524, 629
EaeI	YGGCCR	3 cut(s)	355, 445, 647
Eco130I	CCWWGG	2 cut(s)	216, 448
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	84, 407
EcoO109I	RGGNCCY	1 cut(s)	551
EcoT14I	CCWWGG	2 cut(s)	216, 448
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	2 cut(s)	216, 448
FaeI	CATG	3 cut(s)	204, 452, 629
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	3 cut(s)	200, 448, 625
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	4 cut(s)	17, 158, 543, 606
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	5 cut(s)	293, 357, 447, 553, 649
HapII	CCGG	2 cut(s)	80, 176
Hin1II	CATG	3 cut(s)	204, 452, 629
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	3 cut(s)	161, 413, 484
HpaII	CCGG	2 cut(s)	80, 176
HphI	GGTGA	2 cut(s)	133, 254
Hpy166II	GTNNAC	3 cut(s)	34, 245, 623
Hpy188I	TCNGA	4 cut(s)	190, 320, 426, 475
Hpy188III	TCNNGA	6 cut(s)	56, 64, 107, 158, 401, 606
Hpy8I	GTNNAC	3 cut(s)	34, 245, 623
HpyAV	CCTTC	3 cut(s)	62, 108, 567
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	3 cut(s)	309, 338, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 427, 583
HpyF3I	CTNAG	1 cut(s)	593
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	3 cut(s)	204, 452, 629
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	5 cut(s)	85, 195, 370, 524, 629
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	4 cut(s)	17, 158, 543, 606
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	2 cut(s)	90, 211
MalI	GATC	5 cut(s)	87, 197, 372, 526, 631
MboI	GATC	5 cut(s)	85, 195, 370, 524, 629
MboII	GAAGA	1 cut(s)	5
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	3 cut(s)	85, 524, 629
MhlI	GDGCHC	1 cut(s)	130
MlsI	TGGCCA	3 cut(s)	357, 447, 649
MluCI	AATT	3 cut(s)	228, 578, 641
MluNI	TGGCCA	3 cut(s)	357, 447, 649
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	502
Mox20I	TGGCCA	3 cut(s)	357, 447, 649
MscI	TGGCCA	3 cut(s)	357, 447, 649
MseI	TTAA	2 cut(s)	297, 467
Msp20I	TGGCCA	3 cut(s)	357, 447, 649
MspI	CCGG	2 cut(s)	80, 176
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	378
MwoI	GCNNNNNNNGC	3 cut(s)	230, 427, 583
NciI	CCSGG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	5 cut(s)	85, 195, 370, 524, 629
NlaIII	CATG	3 cut(s)	204, 452, 629
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	161, 413
PflFI	GACNNNGTC	1 cut(s)	601
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	1 cut(s)	551
PsuI	RGATCY	3 cut(s)	85, 524, 629
PsyI	GACNNNGTC	1 cut(s)	601
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	297, 467
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	5 cut(s)	85, 195, 370, 524, 629
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	130
SfaNI	GCATC	1 cut(s)	417
Sse9I	AATT	3 cut(s)	228, 578, 641
SseBI	AGGCCT	1 cut(s)	293
SspMI	CTAG	4 cut(s)	17, 158, 543, 606
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	2 cut(s)	216, 448
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	1 cut(s)	473
TasI	AATT	3 cut(s)	228, 578, 641
TfiI	GAWTC	2 cut(s)	161, 413
Tru1I	TTAA	2 cut(s)	297, 467
Tru9I	TTAA	2 cut(s)	297, 467
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	214
Tth111I	GACNNNGTC	1 cut(s)	601
XbaI	TCTAGA	2 cut(s)	157, 605
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	4 cut(s)	17, 158, 543, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.