Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0025916

Physical Location & Seq

Genomic Coordinates Reverse (-)

57313160 .. 57313624

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG419000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGATCACATGGGACAGTGTAACCAAGGTAGCAGCAATTGCTTCAATGTGTATACCACCAGAAGTATCTCACCACCCGTTTATGGGCGAGGTTGTTCAGGCCTTTAAGCTTGTATGCAATGAGTTCAGAGAAACAAAAGAACTTGCAGGTTCAACAAGTTGTGGCCAAGACGATGATGATCTCTGCATTCATACAGATAGTGGTAATCTTGAAGTGGCAGAATCACAGCTTCAGATGCCTGTATTCGGGGCTGGCCATGGCACTAAAATACCCTTAACGTCAGATTTTTTGAGTCCAAGTGTGGGATTTGAGGTTGAGGGGCAGGAAGTTGGATCTTTTAGGAGGTACTCTAGTTCAGGGCCTTTGAGGACTGGTAGGAGAAGGCAATTTTGGCAAAGACTAAGGACTTTGTCTAGAGGAAGTATGAGTGAACATGGATCCTCATTGAAATTGTGGCCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

154

Amino Acids

16.99

Weight (kDa)

5.93

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025916)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug02G0380300
rosa_samantha	Rh2AG433200 Rh2CG419000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	52
AclWI	GGATC	3 cut(s)	340, 432, 445
AcoI	YGGCCR	3 cut(s)	163, 253, 455
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	4 cut(s)	82, 83, 245, 302
AgsI	TTSAA	4 cut(s)	45, 153, 212, 448
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AluBI	AGCT	2 cut(s)	109, 229
AluI	AGCT	2 cut(s)	109, 229
AlwI	GGATC	3 cut(s)	340, 432, 445
AoxI	GGCC	5 cut(s)	99, 163, 253, 359, 455
ApeKI	GCWGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	62
BaeI	ACNNNNGTAYC	2 cut(s)	337, 370
BalI	TGGCCA	3 cut(s)	165, 255, 457
BamHI	GGATCC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	44
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	2 cut(s)	351, 414
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	439
BmsI	GCATC	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	24, 256
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 83, 245, 302
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	24, 256
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	4 cut(s)	82, 83, 245, 302
BseMI	GCAATG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	44
BshFI	GGCC	5 cut(s)	101, 165, 255, 361, 457
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	4 cut(s)	82, 83, 245, 302
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	5 cut(s)	101, 165, 255, 361, 457
Bsp143I	GATC	4 cut(s)	3, 178, 332, 437
Bsp19I	CCATGG	1 cut(s)	256
BspANI	GGCC	5 cut(s)	101, 165, 255, 361, 457
BspLI	GGNNCC	1 cut(s)	439
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	3 cut(s)	340, 432, 445
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	2 cut(s)	24, 256
BssMI	GATC	4 cut(s)	3, 178, 332, 437
BssNAI	GTATAC	1 cut(s)	53
BssT1I	CCWWGG	2 cut(s)	24, 256
Bst1107I	GTATAC	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	401
BstDSI	CCRYGG	1 cut(s)	256
BstKTI	GATC	4 cut(s)	6, 181, 335, 440
BstMBI	GATC	4 cut(s)	3, 178, 332, 437
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 235, 391
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	2 cut(s)	332, 437
BstYI	RGATCY	2 cut(s)	332, 437
BstZ17I	GTATAC	1 cut(s)	53
BsuRI	GGCC	5 cut(s)	101, 165, 255, 361, 457
BtgI	CCRYGG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	22
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	3 cut(s)	9, 257, 434
CviJI	RGCY	8 cut(s)	101, 109, 165, 229, 251, 255, 361, 457
CviKI_1	RGCY	8 cut(s)	101, 109, 165, 229, 251, 255, 361, 457
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	401
DpnI	GATC	4 cut(s)	5, 180, 334, 439
DpnII	GATC	4 cut(s)	3, 178, 332, 437
EaeI	YGGCCR	3 cut(s)	163, 253, 455
Eco130I	CCWWGG	2 cut(s)	24, 256
Eco147I	AGGCCT	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	359
EcoT14I	CCWWGG	2 cut(s)	24, 256
ErhI	CCWWGG	2 cut(s)	24, 256
FaeI	CATG	3 cut(s)	12, 260, 437
FaiI	YATR	8 cut(s)	10, 53, 83, 115, 192, 258, 425, 435
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	3 cut(s)	8, 256, 433
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	2 cut(s)	351, 414
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	5 cut(s)	101, 165, 255, 361, 457
Hin1II	CATG	3 cut(s)	12, 260, 437
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	2 cut(s)	221, 292
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	53, 431
Hpy188I	TCNGA	3 cut(s)	128, 234, 283
Hpy188III	TCNNGA	2 cut(s)	209, 414
Hpy8I	GTNNAC	2 cut(s)	53, 431
HpyAV	CCTTC	1 cut(s)	375
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	117, 146, 186
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 235, 391
HpyF3I	CTNAG	1 cut(s)	401
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	3 cut(s)	12, 260, 437
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 178, 332, 437
LpnPI	CCDG	8 cut(s)	72, 83, 132, 237, 252, 308, 342, 357
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	351, 414
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	4 cut(s)	5, 180, 334, 439
MboI	GATC	4 cut(s)	3, 178, 332, 437
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	2 cut(s)	332, 437
MlsI	TGGCCA	3 cut(s)	165, 255, 457
MluCI	AATT	3 cut(s)	36, 386, 449
MluNI	TGGCCA	3 cut(s)	165, 255, 457
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	7 cut(s)	82, 304, 310, 336, 360, 410, 451
Mox20I	TGGCCA	3 cut(s)	165, 255, 457
MscI	TGGCCA	3 cut(s)	165, 255, 457
MseI	TTAA	2 cut(s)	105, 275
Msp20I	TGGCCA	3 cut(s)	165, 255, 457
MunI	CAATTG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	38, 235, 391
NcoI	CCATGG	1 cut(s)	256
NdeII	GATC	4 cut(s)	3, 178, 332, 437
NlaIII	CATG	3 cut(s)	12, 260, 437
NlaIV	GGNNCC	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	101
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	221
PflFI	GACNNNGTC	1 cut(s)	409
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	332, 437
PsyI	GACNNNGTC	1 cut(s)	409
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	2 cut(s)	105, 275
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	4 cut(s)	3, 178, 332, 437
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	301
SetI	ASST	8 cut(s)	30, 93, 111, 151, 231, 281, 315, 347
SfaNI	GCATC	1 cut(s)	225
Sse9I	AATT	3 cut(s)	36, 386, 449
SseBI	AGGCCT	1 cut(s)	101
SspMI	CTAG	2 cut(s)	351, 414
StuI	AGGCCT	1 cut(s)	101
StyI	CCWWGG	2 cut(s)	24, 256
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	281
TasI	AATT	3 cut(s)	36, 386, 449
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	105, 275
Tru9I	TTAA	2 cut(s)	105, 275
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	22
Tth111I	GACNNNGTC	1 cut(s)	409
XbaI	TCTAGA	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	2 cut(s)	351, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.