Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0032310

Physical Location & Seq

Genomic Coordinates Forward (+)

76403226 .. 76408803

Gene Structure 5578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG535500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGAGAACAGCGATATCGGCGTCTTTGAGCAGCCAAACTTCGATGGCAAGGCTGATTATCTTCTCGAACTTTTGTTAACAGCCTTCTGTTCCGCCAACTCTGGGAGGGACCCAATTCCATGGTCTAATAGAATGCAGATTGCCCTGGATTCAGCGAGAGGTCTTGAATACATTCACGAGCATACTAAACCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

65

Amino Acids

7.32

Weight (kDa)

4.63

Isoelectric Point (pI)

13.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032310)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug02G0469800
rosa_samantha	Rh2AG535500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	109
BauI	CACGAG	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	110, 111
BmrFI	CCNGG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	119, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	119, 144
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	110, 111
BssECI	CCNNGG	2 cut(s)	119, 144
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	109
CseI	GACGC	1 cut(s)	10
CviAII	CATG	1 cut(s)	120
CviJI	RGCY	3 cut(s)	34, 53, 83
CviKI_1	RGCY	3 cut(s)	34, 53, 83
EciI	GGCGGA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	1 cut(s)	123
FaiI	YATR	2 cut(s)	121, 183
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	1 cut(s)	119
Fnu4HI	GCNGC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
HgaI	GACGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	149
HpaI	GTTAAC	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188III	TCNNGA	3 cut(s)	65, 164, 176
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	123
KflI	GGGWCCC	1 cut(s)	109
KspAI	GTTAAC	1 cut(s)	78
LpnPI	CCDG	3 cut(s)	87, 131, 158
Lsp1109I	GCAGC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	53
MluCI	AATT	1 cut(s)	114
MnlI	CCTC	2 cut(s)	99, 152
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	2 cut(s)	77, 196
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	119
NlaIII	CATG	1 cut(s)	123
NlaIV	GGNNCC	2 cut(s)	110, 111
PctI	GAATGC	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	33
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	110, 111
PspPI	GGNCC	1 cut(s)	109
PspPPI	RGGWCCY	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	77, 196
SatI	GCNGC	1 cut(s)	32
Sau96I	GGNCC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	2 cut(s)	163, 193
SinI	GGWCC	1 cut(s)	109
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	119
TaqI	TCGA	2 cut(s)	42, 66
TasI	AATT	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	2 cut(s)	77, 196
Tru9I	TTAA	2 cut(s)	77, 196
TseI	GCWGC	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.