Rorug02G0469800

Chitin elicitor receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
60059542 .. 60065983
6442 bp
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UTR
Exon/CDS
Intron
Rorug02G0469800.1

Sequence Viewer

Length: 1308 bp
ATGCCCAAGATGGGAGCCATAGGTGTAAAGGTAGACCTTGAATCGGATGAGGAGATCCCATTTAGCTCATCAGCGGCTACGAATAAAGTAGAGGCCTTGGATTTTGAGATGGTTCATTTGCCTTCGCGGCCAGTTATGCCAAACTCATGGATTGCAAGACATATAGGGATGAGAGCTGTGAGGAGTATTTATATTGTCTTATTAAAAGCAAAGATCAACATGTTGCTACCATTCGGTCCACTGGCAATTCTGCTACATTACGTTACTGGAAAGCATGGATGGGTCTTTTTCTTCAGCTTATTGGGCATCATACCTTTGGCAGAGCGTCTAGGATATGCGACTGAGCAACTCGCTTTCTACACAGGGCCAACAGTTGGGGGACTTTTAAATGCCACATTTGGAAATGCAACAGAAATGATCATATCGATTTATGCATTGAAGAATGGAATGATTAGGGTTGTTCAACAATCGTTGTTGGGGTCAATCTTGTCAAACATGCTCTTAGTTCTGGGTTGTGCCTTCTTCTCTGGTGGGATCGTTCATTACAATAAAGTTCAGGTGTTCAACAAGTCGGCTGCCGTCGTGAATTCTGGATTGTTGTTGATGGCTGTAATGGGGATAATGTTTCCAGCTGTGCTTCATTTTACACACACAGAGGTGCATTTTGGGAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCTGTATAATGCTAGTGGCATATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCATCGTAGTCTTTATAACCCCATTAATGAGGAAGGAGACAATGATGAAGATTGTGATGAGGATGAGATTCCTGAGATAACTCACTGGGAAGCAATTGGCTGGCTTTCTGTTTTAACTGTGTGGGTGTCCATTTTGTCCGGATACCTTGTCGATGCCATCCAGGGAGCATCAGACTCTTTCAACATTCCTGTGGCATTTATCAGTGTCATTTTGCTCCCTATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCATGAAGGATAAGCTTGACATTACACTTGGAGTTGCGATTGGATCATCGACACAAATATCCATGTTTGTGATTCCCTTCTGTGTGGTTGTTGGTTGGATCATGGGAGAGCGAATGGACTTGAATTTTCAACTCTTTGAGACTGCTACACTCTTTATCACCGTGCTTGTAGTGGCATTTATGTTGCAGGAAGGGACGTCAAACTACTTCAAAGGATTGATGCTTATCCTGTGTTATCTCATAGTTGCAGCCAGTTTTTTTGTACATGTAGATCCTTCAAATGATGCTAACTAA

Protein Analysis

435

Amino Acids

47.78

Weight (kDa)

5.33

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 94 - 249 3.3e-22 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 283 - 424 1.1e-23 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 768
AatII GACGTC 1 cut(s) 1214
AccB7I CCANNNNNTGG 1 cut(s) 374
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 127
AccIII TCCGGA 1 cut(s) 890
AciI CCGC 2 cut(s) 74, 127
AclWI GGATC 5 cut(s) 49, 542, 1066, 1121, 1280
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 2 cut(s) 586, 1138
AcuI CTGAAG 1 cut(s) 277
AcyI GRCGYC 1 cut(s) 1211
AfaI GTAC 1 cut(s) 1278
AfiI CCNNNNNNNGG 4 cut(s) 11, 43, 374, 977
AflIII ACRYGT 2 cut(s) 219, 1279
AjnI CCWGG 1 cut(s) 912
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AleI CACNNNNGTG 1 cut(s) 656
AluBI AGCT 7 cut(s) 66, 176, 297, 632, 702, 729, 1030
AluI AGCT 7 cut(s) 66, 176, 297, 632, 702, 729, 1030
Alw26I GTCTC 2 cut(s) 783, 1148
AlwI GGATC 5 cut(s) 49, 542, 1066, 1121, 1280
Aor13HI TCCGGA 1 cut(s) 890
AoxI GGCC 3 cut(s) 93, 128, 365
ApeKI GCWGC 3 cut(s) 575, 986, 1262
ApoI RAATTY 2 cut(s) 586, 1138
AseI ATTAAT 1 cut(s) 777
AspS9I GGNCC 2 cut(s) 236, 365
AsuHPI GGTGA 1 cut(s) 1165
AvaII GGWCC 1 cut(s) 236
BbvI GCAGC 3 cut(s) 562, 973, 1274
BccI CCATC 5 cut(s) 4, 103, 273, 598, 917
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 1 cut(s) 914
BciVI GTATCC 1 cut(s) 887
BclI TGATCA 1 cut(s) 417
BcoDI GTCTC 2 cut(s) 783, 1148
BfaI CTAG 2 cut(s) 329, 713
BfmI CTRYAG 1 cut(s) 987
BfuI GTATCC 1 cut(s) 887
BglI GCCNNNNNGGC 1 cut(s) 127
BisI GCNGC 5 cut(s) 75, 128, 576, 987, 1263
BlsI GCNGC 5 cut(s) 76, 129, 577, 988, 1264
Bme1390I CCNGG 1 cut(s) 914
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 236, 365
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 914
BmrI ACTGGG 1 cut(s) 847
BmsI GCATC 5 cut(s) 315, 895, 929, 1224, 1288
BmuI ACTGGG 1 cut(s) 847
Bsa29I ATCGAT 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 1238
BsaHI GRCGYC 1 cut(s) 1211
BsaJI CCNNGG 2 cut(s) 96, 913
BsaWI WCCGGW 1 cut(s) 890
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 43, 374, 977
Bse1I ACTGG 5 cut(s) 131, 246, 271, 842, 1266
Bse8I GATNNNNATC 1 cut(s) 1238
BseAI TCCGGA 1 cut(s) 890
BseBI CCWGG 1 cut(s) 914
BseCI ATCGAT 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 96, 913
BseGI GGATG 5 cut(s) 52, 174, 284, 820, 909
BseJI GATNNNNATC 1 cut(s) 1238
BseLI CCNNNNNNNGG 4 cut(s) 11, 43, 374, 977
BseMII CTCAG 2 cut(s) 333, 816
BseNI ACTGG 5 cut(s) 131, 246, 271, 842, 1266
BseRI GAGGAG 2 cut(s) 65, 196
BseXI GCAGC 3 cut(s) 562, 973, 1274
Bsh1236I CGCG 1 cut(s) 127
BshFI GGCC 3 cut(s) 95, 130, 367
BshVI ATCGAT 1 cut(s) 425
BsiSI CCGG 1 cut(s) 891
BslFI GGGAC 2 cut(s) 393, 1222
BslI CCNNNNNNNGG 4 cut(s) 11, 43, 374, 977
BsmAI GTCTC 2 cut(s) 783, 1148
BsmFI GGGAC 2 cut(s) 393, 1222
BsnI GGCC 3 cut(s) 95, 130, 367
Bsp13I TCCGGA 1 cut(s) 890
Bsp1407I TGTACA 1 cut(s) 1276
Bsp143I GATC 7 cut(s) 54, 213, 417, 534, 1058, 1113, 1285
BspACI CCGC 2 cut(s) 74, 127
BspANI GGCC 3 cut(s) 95, 130, 367
BspCNI CTCAG 2 cut(s) 334, 817
BspDI ATCGAT 1 cut(s) 425
BspEI TCCGGA 1 cut(s) 890
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 991
BspPI GGATC 5 cut(s) 49, 542, 1066, 1121, 1280
BsrGI TGTACA 1 cut(s) 1276
BsrI ACTGG 5 cut(s) 131, 246, 271, 842, 1266
BssECI CCNNGG 2 cut(s) 96, 913
BssMI GATC 7 cut(s) 54, 213, 417, 534, 1058, 1113, 1285
BssNI GRCGYC 1 cut(s) 1211
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 914
Bst4CI ACNGT 3 cut(s) 373, 871, 1177
BstACI GRCGYC 1 cut(s) 1211
BstAPI GCANNNNNTGC 1 cut(s) 995
BstAUI TGTACA 1 cut(s) 1276
BstC8I GCNNGC 3 cut(s) 727, 854, 996
BstDEI CTNAG 4 cut(s) 342, 502, 746, 825
BstENI CCTNNNNNAGG 1 cut(s) 975
BstF5I GGATG 5 cut(s) 52, 174, 284, 820, 909
BstFNI CGCG 1 cut(s) 127
BstKTI GATC 7 cut(s) 57, 216, 420, 537, 1061, 1116, 1288
BstMAI GTCTC 2 cut(s) 783, 1148
BstMBI GATC 7 cut(s) 54, 213, 417, 534, 1058, 1113, 1285
BstMWI GCNNNNNNNGC 4 cut(s) 127, 136, 303, 995
BstNI CCWGG 1 cut(s) 914
BstNSI RCATGY 4 cut(s) 223, 499, 998, 1283
BstSCI CCNGG 1 cut(s) 912
BstSFI CTRYAG 1 cut(s) 987
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 3 cut(s) 562, 973, 1274
BstX2I RGATCY 2 cut(s) 54, 1285
BstXI CCANNNNNNTGG 1 cut(s) 147
BstYI RGATCY 2 cut(s) 54, 1285
Bsu15I ATCGAT 1 cut(s) 425
BsuI GTATCC 1 cut(s) 887
BsuRI GGCC 3 cut(s) 95, 130, 367
BsuTUI ATCGAT 1 cut(s) 425
BtsCI GGATG 5 cut(s) 52, 174, 284, 820, 909
BtsIMutI CAGTG 3 cut(s) 239, 835, 961
Cac8I GCNNGC 3 cut(s) 727, 854, 996
Cfr13I GGNCC 2 cut(s) 236, 365
ClaI ATCGAT 1 cut(s) 425
CseI GACGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 1277
CviQI GTAC 1 cut(s) 1277
DdeI CTNAG 4 cut(s) 342, 502, 746, 825
DpnI GATC 7 cut(s) 56, 215, 419, 536, 1060, 1115, 1287
DpnII GATC 7 cut(s) 54, 213, 417, 534, 1058, 1113, 1285
DraI TTTAAA 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 96
Eco147I AGGCCT 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 975
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 912
EcoT14I CCWWGG 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 436
ErhI CCWWGG 1 cut(s) 96
FaqI GGGAC 2 cut(s) 393, 1222
FauNDI CATATG 1 cut(s) 721
FbaI TGATCA 1 cut(s) 417
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 5 cut(s) 75, 128, 576, 987, 1263
FokI GGATG 5 cut(s) 59, 181, 291, 827, 896
Fsp4HI GCNGC 5 cut(s) 75, 128, 576, 987, 1263
FspBI CTAG 2 cut(s) 329, 713
GluI GCNGC 5 cut(s) 75, 128, 576, 987, 1263
HaeIII GGCC 3 cut(s) 95, 130, 367
HapII CCGG 1 cut(s) 891
HgaI GACGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 1211
HindIII AAGCTT 1 cut(s) 1028
HinfI GANTC 4 cut(s) 41, 820, 926, 1087
HpaII CCGG 1 cut(s) 891
HphI GGTGA 1 cut(s) 1165
Hpy166II GTNNAC 2 cut(s) 34, 239
Hpy188I TCNGA 3 cut(s) 46, 676, 925
Hpy188III TCNNGA 5 cut(s) 583, 591, 690, 824, 891
Hpy8I GTNNAC 2 cut(s) 34, 239
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 7 cut(s) 132, 529, 779, 1015, 1102, 1199, 1299
HpyCH4III ACNGT 3 cut(s) 373, 871, 1177
HpyCH4IV ACGT 2 cut(s) 261, 1211
HpyCH4V TGCA 9 cut(s) 155, 407, 434, 661, 725, 989, 998, 1201, 1262
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 136, 303, 995
HpyF3I CTNAG 4 cut(s) 342, 502, 746, 825
HpySE526I ACGT 2 cut(s) 261, 1211
Hsp92I GRCGYC 1 cut(s) 1211
Kpn2I TCCGGA 1 cut(s) 890
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 7 cut(s) 54, 213, 417, 534, 1058, 1113, 1285
LmnI GCTCC 3 cut(s) 14, 917, 972
Lsp1109I GCAGC 3 cut(s) 562, 973, 1274
LweI GCATC 5 cut(s) 315, 895, 929, 1224, 1288
MaeI CTAG 2 cut(s) 329, 713
MaeII ACGT 2 cut(s) 261, 1211
MaeIII GTNAC 1 cut(s) 262
MalI GATC 7 cut(s) 56, 215, 419, 536, 1060, 1115, 1287
MboI GATC 7 cut(s) 54, 213, 417, 534, 1058, 1113, 1285
MboII GAAGA 4 cut(s) 283, 451, 514, 812
MfeI CAATTG 1 cut(s) 846
MflI RGATCY 2 cut(s) 54, 1285
MluCI AATT 4 cut(s) 246, 586, 846, 1138
MlyI GAGTC 1 cut(s) 920
MmeI TCCRAC 1 cut(s) 1091
MnlI CCTC 6 cut(s) 43, 85, 174, 649, 775, 805
Mph1103I ATGCAT 1 cut(s) 436
MroI TCCGGA 1 cut(s) 890
MseI TTAA 4 cut(s) 203, 386, 777, 866
MslI CAYNNNNRTG 4 cut(s) 656, 941, 999, 1082
MspA1I CMGCKG 2 cut(s) 74, 632
MspI CCGG 1 cut(s) 891
MspR9I CCNGG 1 cut(s) 914
MunI CAATTG 1 cut(s) 846
MvaI CCWGG 1 cut(s) 914
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 4 cut(s) 127, 136, 303, 995
NdeI CATATG 1 cut(s) 721
NdeII GATC 7 cut(s) 54, 213, 417, 534, 1058, 1113, 1285
NlaIV GGNNCC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 436
NspI RCATGY 4 cut(s) 223, 499, 998, 1283
OliI CACNNNNGTG 1 cut(s) 656
PaeI GCATGC 1 cut(s) 998
PceI AGGCCT 1 cut(s) 95
PciI ACATGT 2 cut(s) 219, 1279
PfeI GAWTC 3 cut(s) 41, 820, 1087
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 5 cut(s) 76, 129, 577, 988, 1264
PleI GAGTC 1 cut(s) 920
PpsI GAGTC 1 cut(s) 920
PscI ACATGT 2 cut(s) 219, 1279
PshBI ATTAAT 1 cut(s) 777
PsiI TTATAA 1 cut(s) 768
Psp6I CCWGG 1 cut(s) 912
PspGI CCWGG 1 cut(s) 912
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 2 cut(s) 236, 365
PstI CTGCAG 1 cut(s) 991
PsuI RGATCY 2 cut(s) 54, 1285
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 1 cut(s) 1278
RsaNI GTAC 1 cut(s) 1277
RseI CAYNNNNRTG 4 cut(s) 656, 941, 999, 1082
SaqAI TTAA 4 cut(s) 203, 386, 777, 866
SatI GCNGC 5 cut(s) 75, 128, 576, 987, 1263
Sau3AI GATC 7 cut(s) 54, 213, 417, 534, 1058, 1113, 1285
Sau96I GGNCC 2 cut(s) 236, 365
SchI GAGTC 1 cut(s) 920
ScrFI CCNGG 1 cut(s) 914
SfaNI GCATC 5 cut(s) 315, 895, 929, 1224, 1288
SfcI CTRYAG 1 cut(s) 987
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 4 cut(s) 656, 941, 999, 1082
SphI GCATGC 1 cut(s) 998
Sse9I AATT 4 cut(s) 246, 586, 846, 1138
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 2 cut(s) 74, 127
SspMI CTAG 2 cut(s) 329, 713
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 912
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 3 cut(s) 373, 871, 1177
TaiI ACGT 2 cut(s) 264, 1214
TaqI TCGA 3 cut(s) 425, 903, 1064
TaqII GACCGA 1 cut(s) 224
TasI AATT 4 cut(s) 246, 586, 846, 1138
TatI WGTACW 1 cut(s) 1276
TauI GCSGC 2 cut(s) 77, 130
TfiI GAWTC 3 cut(s) 41, 820, 1087
Tru1I TTAA 4 cut(s) 203, 386, 777, 866
Tru9I TTAA 4 cut(s) 203, 386, 777, 866
TscAI CASTG 3 cut(s) 246, 842, 961
TseI GCWGC 3 cut(s) 575, 986, 1262
TspDTI ATGAA 5 cut(s) 104, 530, 629, 813, 1034
TspRI CASTG 3 cut(s) 246, 842, 961
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 236
VspI ATTAAT 1 cut(s) 777
XagI CCTNNNNNAGG 1 cut(s) 975
XapI RAATTY 2 cut(s) 586, 1138
XceI RCATGY 4 cut(s) 223, 499, 998, 1283
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 2 cut(s) 329, 713
ZraI GACGTC 1 cut(s) 1212
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.