Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Forward (+)

70997875 .. 70999594

Gene Structure 1720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G044350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGATATGCAAGCATCAAAAGAATTTCTTGCCGAATTAAACGTTTTGACTCGTGTACATCACTTGAATCTGGTGCGCTTGATTGGTTATTGTGTTGAGGGATCCCTTTTTCTCGTATATGAATACATTGAAAATGGCAATTTAAGCCAACATCTGCGTGGTTCAGGGAGGGACCCAATATCATGGTCTAATAGAGTGCAGATTGCCCTGGATTCAGCAAGAGGTCTTGAATACATTCATGAACATACTGTTCCTGTTTATATCCACCGTGACATAAAGTCAGCCAATATATTAATAGACAAGAACTACCATGCAAAGGTTGCAGATTTTGGATTGACTAAACTGACTGAAGTTGGAAGTTCATCACTCCCCACGCGTCTTGTGGGGACATTTGGATACATGCCACCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

137

Amino Acids

15.47

Weight (kDa)

6.37

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	4 - 121	8.7e-29	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 137	1.6e-27	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	376
AclI	AACGTT	1 cut(s)	42
AclWI	GGATC	2 cut(s)	96, 109
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	67, 131, 230
AhdI	GACNNNNNGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	207
AlwI	GGATC	2 cut(s)	96, 109
ApoI	RAATTY	1 cut(s)	23
AseI	ATTAAT	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	172
BamHI	GGATCC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	172
BmeRI	GACNNNNNGTC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	3 cut(s)	103, 173, 174
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	376
BslFI	GGGAC	2 cut(s)	185, 400
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmFI	GGGAC	2 cut(s)	185, 400
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	103, 173, 174
BspPI	GGATC	2 cut(s)	96, 109
BsrGI	TGTACA	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	1 cut(s)	101
BssSI	CACGAG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	250, 269
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 320
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	101
BstXI	CCANNNNNNTGG	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	12
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	4 cut(s)	183, 239, 311, 400
CviJI	RGCY	2 cut(s)	147, 284
CviKI_1	RGCY	2 cut(s)	147, 284
CviQI	GTAC	1 cut(s)	56
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
DriI	GACNNNNNGTC	1 cut(s)	277
Eam1105I	GACNNNNNGTC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	207
FaeI	CATG	4 cut(s)	186, 242, 314, 403
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	2 cut(s)	185, 400
FatI	CATG	4 cut(s)	182, 238, 310, 399
GlaI	GCGC	1 cut(s)	77
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	186, 242, 314, 403
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	3 cut(s)	49, 67, 212
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	227, 239
Hpy8I	GTNNAC	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	250, 269
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	10, 199, 314, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 320
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	186, 242, 314, 403
HspAI	GCGC	1 cut(s)	76
KflI	GGGWCCC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	101
LpnPI	CCDG	5 cut(s)	56, 150, 194, 221, 267
LweI	GCATC	1 cut(s)	23
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	3 cut(s)	23, 35, 139
MluI	ACGCGT	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	3 cut(s)	91, 162, 215
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	3 cut(s)	38, 143, 293
MslI	CAYNNNNRTG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	144, 320
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	4 cut(s)	186, 242, 314, 403
NlaIV	GGNNCC	3 cut(s)	103, 173, 174
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	403
PagI	TCATGA	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	67, 212
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	172
PshBI	ATTAAT	1 cut(s)	293
Psp1406I	AACGTT	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	103, 173, 174
PspPI	GGNCC	1 cut(s)	172
PspPPI	RGGWCCY	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	38, 143, 293
Sau3AI	GATC	1 cut(s)	101
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	3 cut(s)	45, 226, 321
SfaNI	GCATC	1 cut(s)	23
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	3 cut(s)	23, 35, 139
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	250, 269
TaiI	ACGT	1 cut(s)	45
TasI	AATT	3 cut(s)	23, 35, 139
TatI	WGTACW	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	67, 212
Tru1I	TTAA	3 cut(s)	38, 143, 293
Tru9I	TTAA	3 cut(s)	38, 143, 293
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	135, 227, 255, 351
VpaK11BI	GGWCC	1 cut(s)	172
VspI	ATTAAT	1 cut(s)	293
XapI	RAATTY	1 cut(s)	23
XceI	RCATGY	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	2 cut(s)	155, 379
XmnI	GAANNNNTTC	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.