Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Forward (+)

38622514 .. 38623086

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1277200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGATTTCGAATCGGGTTAGGGTTCCTGGTGCTGGTTTCCCTCTGTTGCACGGTGAAACCCCAGTGCAGCAAGAGCTGCGATGCTCTAGCTTCTTACTACGTATGGCAGGGCACTAATCTCAGTTTCATTGGCGATATCATGAATACGACCGACGCCACCATCGTCACCTACAACAAGGACTCGGTTCCCAACATATACAGCGTCCGGTTCGGCATCAGGGTCAATGTTCCATTCACCTGTGGTTGCATCAATAGCGACTTCCACGGCCAAATGTTCGAGTGGGATGTCCGTACCGGCGACACGTACGACCAGATTGCGAAGATTTTCTATTCGAATTTGACGACGGTGGAGGACTTGGAGTGGTTCAACAGCTATGATCCTAATAATATACTCAATAATACTAAAGTGAATGTGACTGTGAATTGTACGTGTGGGAATAGCACGGTTTCGGAGGATTATGGGCTGTTTATTACTTATCCTCTGCGGCCGGAGGACAGTTTGGATTCTATTGCGGAGACGGAGCAGTTGGATCAGGCTTTGCTGCAGAGATATAATCCTGGTGTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

191

Amino Acids

21.32

Weight (kDa)

4.32

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM_RLK	PF23577	158 - 189	3.8e-12	LysM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	487, 515
AclWI	GGATC	2 cut(s)	374, 540
AcoI	YGGCCR	2 cut(s)	268, 488
AcsI	RAATTY	1 cut(s)	337
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	3 cut(s)	295, 308, 430
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	2 cut(s)	303, 431
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	27, 559
AluBI	AGCT	3 cut(s)	78, 92, 375
AluI	AGCT	3 cut(s)	78, 92, 375
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	2 cut(s)	374, 540
AoxI	GGCC	2 cut(s)	268, 488
ApeKI	GCWGC	3 cut(s)	69, 78, 544
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	326
AsuHPI	GGTGA	3 cut(s)	67, 160, 229
AsuII	TTCGAA	2 cut(s)	10, 335
BaeGI	GKGCMC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	65, 81, 531
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	283
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BciT130I	CCWGG	2 cut(s)	29, 561
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	545
BisI	GCNGC	4 cut(s)	70, 79, 488, 545
BlsI	GCNGC	4 cut(s)	71, 80, 489, 546
Bme1390I	CCNGG	2 cut(s)	29, 561
BmiI	GGNNCC	2 cut(s)	26, 189
BmrFI	CCNGG	2 cut(s)	29, 561
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	3 cut(s)	73, 225, 258
BmuI	ACTGGG	1 cut(s)	58
Bpu14I	TTCGAA	2 cut(s)	10, 335
BsaAI	YACGTR	3 cut(s)	103, 306, 432
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	2 cut(s)	29, 561
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	116
BseX3I	CGGCCG	1 cut(s)	488
BseXI	GCAGC	3 cut(s)	65, 81, 531
BsgI	GTGCAG	1 cut(s)	88
Bsh1285I	CGRYCG	2 cut(s)	153, 491
BshFI	GGCC	2 cut(s)	270, 490
BsiEI	CGRYCG	2 cut(s)	153, 491
BsiSI	CCGG	3 cut(s)	208, 297, 491
BsiWI	CGTACG	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	512
BsmBI	CGTCTC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	270, 490
Bsp119I	TTCGAA	2 cut(s)	10, 335
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	379, 532
BspACI	CCGC	2 cut(s)	487, 515
BspANI	GGCC	2 cut(s)	270, 490
BspCNI	CTCAG	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	26, 189
BspMAI	CTGCAG	1 cut(s)	549
BspPI	GGATC	2 cut(s)	374, 540
BspT104I	TTCGAA	2 cut(s)	10, 335
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	2 cut(s)	379, 532
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	29, 561
Bst4CI	ACNGT	5 cut(s)	55, 349, 421, 448, 500
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstBAI	YACGTR	3 cut(s)	103, 306, 432
BstBI	TTCGAA	2 cut(s)	10, 335
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	2 cut(s)	382, 535
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	2 cut(s)	379, 532
BstMCI	CGRYCG	2 cut(s)	153, 491
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 78, 255
BstNI	CCWGG	2 cut(s)	29, 561
BstSCI	CCNGG	2 cut(s)	27, 559
BstSFI	CTRYAG	1 cut(s)	545
BstSLI	GKGCMC	1 cut(s)	116
BstSNI	TACGTA	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	65, 81, 531
BstZI	CGGCCG	1 cut(s)	488
BsuRI	GGCC	2 cut(s)	270, 490
BtgI	CCRYGG	1 cut(s)	265
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	296
CseI	GACGC	2 cut(s)	164, 193
Csp6I	GTAC	3 cut(s)	294, 307, 429
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	7 cut(s)	78, 92, 270, 375, 466, 490, 539
CviKI_1	RGCY	7 cut(s)	78, 92, 270, 375, 466, 490, 539
CviQI	GTAC	3 cut(s)	294, 307, 429
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	2 cut(s)	381, 534
DpnII	GATC	2 cut(s)	379, 532
EaeI	YGGCCR	2 cut(s)	268, 488
EagI	CGGCCG	1 cut(s)	488
EclXI	CGGCCG	1 cut(s)	488
Eco105I	TACGTA	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	139
Eco52I	CGGCCG	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	27, 559
EcoRV	GATATC	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	1 cut(s)	145
FaiI	YATR	8 cut(s)	106, 143, 197, 199, 378, 392, 462, 555
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	70, 79, 488, 545
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	4 cut(s)	70, 79, 488, 545
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	4 cut(s)	70, 79, 488, 545
HaeIII	GGCC	2 cut(s)	270, 490
HapII	CCGG	3 cut(s)	208, 297, 491
HgaI	GACGC	2 cut(s)	164, 193
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	145
HinfI	GANTC	3 cut(s)	12, 182, 506
HpaII	CCGG	3 cut(s)	208, 297, 491
HphI	GGTGA	3 cut(s)	67, 160, 229
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	1 cut(s)	142
Hpy99I	CGWCG	2 cut(s)	158, 349
HpyCH4III	ACNGT	5 cut(s)	55, 349, 421, 448, 500
HpyCH4IV	ACGT	3 cut(s)	102, 305, 431
HpyCH4V	TGCA	4 cut(s)	51, 69, 249, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 78, 255
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	3 cut(s)	102, 305, 431
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	379, 532
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	3 cut(s)	65, 81, 531
LweI	GCATC	3 cut(s)	73, 225, 258
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	3 cut(s)	102, 305, 431
MaeIII	GTNAC	2 cut(s)	166, 415
MalI	GATC	2 cut(s)	381, 534
MboI	GATC	2 cut(s)	379, 532
MboII	GAAGA	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	2 cut(s)	337, 424
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	5 cut(s)	53, 346, 448, 487, 492
MroXI	GAANNNNTTC	1 cut(s)	326
MspI	CCGG	3 cut(s)	208, 297, 491
MspR9I	CCNGG	2 cut(s)	29, 561
MvaI	CCWGG	2 cut(s)	29, 561
MwoI	GCNNNNNNNGC	3 cut(s)	75, 78, 255
NdeII	GATC	2 cut(s)	379, 532
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	2 cut(s)	26, 189
NmuCI	GTSAC	2 cut(s)	166, 415
NspV	TTCGAA	2 cut(s)	10, 335
PagI	TCATGA	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 341
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	12, 506
Pfl23II	CGTACG	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	71, 80, 489, 546
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Ppu21I	YACGTR	3 cut(s)	103, 306, 432
Psp6I	CCWGG	2 cut(s)	27, 559
PspGI	CCWGG	2 cut(s)	27, 559
PspLI	CGTACG	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	26, 189
PstI	CTGCAG	1 cut(s)	549
RsaI	GTAC	3 cut(s)	295, 308, 430
RsaNI	GTAC	3 cut(s)	294, 307, 429
SatI	GCNGC	4 cut(s)	70, 79, 488, 545
Sau3AI	GATC	2 cut(s)	379, 532
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	29, 561
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	8 cut(s)	80, 94, 105, 173, 242, 308, 377, 434
SfaNI	GCATC	3 cut(s)	73, 225, 258
SfcI	CTRYAG	1 cut(s)	545
SfuI	TTCGAA	2 cut(s)	10, 335
SnaBI	TACGTA	1 cut(s)	103
Sse9I	AATT	2 cut(s)	337, 424
SsiI	CCGC	2 cut(s)	487, 515
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	27, 559
TaaI	ACNGT	5 cut(s)	55, 349, 421, 448, 500
TaiI	ACGT	3 cut(s)	105, 308, 434
TaqI	TCGA	3 cut(s)	10, 279, 335
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	337, 424
TauI	GCSGC	1 cut(s)	490
TfiI	GAWTC	2 cut(s)	12, 506
TscAI	CASTG	1 cut(s)	71
TseFI	GTSAC	2 cut(s)	166, 415
TseI	GCWGC	3 cut(s)	69, 78, 544
Tsp45I	GTSAC	2 cut(s)	166, 415
TspDTI	ATGAA	2 cut(s)	118, 158
TspGWI	ACGGA	2 cut(s)	281, 536
TspRI	CASTG	1 cut(s)	71
XapI	RAATTY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.