Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034002.1

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 770

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034002.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 283 bp

atgggtataactgtggacaaatcagtggagttctcatatgaagagctttccaaagctactaatgacttcagcataaaaattggacagggtgggtttggagctgtttattatgcagaactccgaggcgagaaagcagcaatcaaaaggatggatatgcaagcaacaaaagaattccttgctgaactgaaggttctaacacatgttcatcatttaaacctggtgcgcttgatagggtattgtgtcgaggactccttgttcctagtgtatgagtacattgaaaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

94

Amino Acids

10.7

Weight (kDa)

5.28

Isoelectric Point (pI)

14.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	2 cut(s)	52, 206
AfaI	GTAC	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	216
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	3 cut(s)	46, 56, 101
AluI	AGCT	3 cut(s)	46, 56, 101
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	218
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	159
CfoI	GCGC	1 cut(s)	225
CsiI	ACCWGGT	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	3 cut(s)	46, 56, 101
CviKI_1	RGCY	3 cut(s)	46, 56, 101
CviQI	GTAC	1 cut(s)	271
DraI	TTTAAA	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	52, 206
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	203
FaiI	YATR	8 cut(s)	8, 37, 39, 74, 111, 155, 201, 267
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	1 cut(s)	199
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	135
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	113, 157
Hsp92II	CATG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	223
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	3 cut(s)	71, 203, 230
Lsp1109I	GCAGC	1 cut(s)	146
MabI	ACCWGGT	1 cut(s)	216
MaeI	CTAG	1 cut(s)	260
MboII	GAAGA	1 cut(s)	53
MluCI	AATT	2 cut(s)	78, 170
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	2 cut(s)	116, 238
MseI	TTAA	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
NdeI	CATATG	1 cut(s)	37
NlaIII	CATG	1 cut(s)	203
NspI	RCATGY	1 cut(s)	203
PciI	ACATGT	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PscI	ACATGT	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	1 cut(s)	135
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	5 cut(s)	48, 58, 103, 192, 219
SexAI	ACCWGGT	1 cut(s)	216
Sse9I	AATT	2 cut(s)	78, 170
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	78, 170
TatI	WGTACW	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	54, 194
TspRI	CASTG	1 cut(s)	30
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	1 cut(s)	203
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.