Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Reverse (-)

12900350 .. 12901099

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTTTCGAGTTTTGAATCGACCCAGATGAAGTTCCGGATTGGATGTGTGTTGTTTGTTGGGTTGTGTCTTTGTTCTGGAGCAAATTCCCAGTGCGGTAGTAGCCAAAGCTGCGATGCTTTGGGTTCTTATTACTTGTGGCAGGGCACCAATCTCACCTTCACCGGAACGTTAATGAACACCAGCGACGCCATCATAGCCAGTGTTAACAAATTGCCGAACAAGGACAGTGTTCAATCCGGGACGAGGGTCAATGTTCCGTTCAGCTGTGGCTGCATAAATGGTTCGTTTCTGGGCCACGTGTTCGAGTACGACGTCGTCAAAGGCGACACGTACGAAAAGGTTGCGAGTTTGTACTATGCCAACCTGACCACGGCGGATGCTATGGCGTGGTTCAATGAGCACCCTGAGATTGACATACCCGATAATGCGAAGCTGAATGTGGTGGTCAACTGTTCGTGTGGGAATAGCGCGGTTTCCGAGGACTATGGGTTGTTTATCACGTACCCACTTCGGCCCGGAGACACTTTGGCTTCGATTGCTCAGACGGAGAATCTGGATCAGAGTTTGCTGCAGGATTATAATCCGGGTGTGAACTTTAGCGGAGGGAGTGGTTACGTGTATATTCCGGGCAAAGGTTTGAGCTTTTTTTTAGAGGCCAAAGTTTCATTTGACTATTTGAGTTGTAGTTTTAAAATTTTGATGCCTGCATTTGAAGAATCTAATGAATCTGCAGATTTGGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

249

Amino Acids

26.93

Weight (kDa)

4.42

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM_RLK	PF23577	167 - 210	9.7e-21	LysM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AatII	GACGTC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	146
AccII	CGCG	1 cut(s)	473
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	4 cut(s)	96, 377, 473, 603
AclI	AACGTT	1 cut(s)	170
AclWI	GGATC	1 cut(s)	567
AcsI	RAATTY	2 cut(s)	85, 696
AcvI	CACGTG	1 cut(s)	301
AcyI	GRCGYC	2 cut(s)	189, 315
AfaI	GTAC	4 cut(s)	311, 335, 356, 506
AfiI	CCNNNNNNNGG	3 cut(s)	246, 373, 635
AflIII	ACRYGT	3 cut(s)	300, 330, 618
AgsI	TTSAA	4 cut(s)	17, 236, 397, 716
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	4 cut(s)	111, 267, 436, 645
AluI	AGCT	4 cut(s)	111, 267, 436, 645
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	1 cut(s)	567
Aor13HI	TCCGGA	1 cut(s)	36
AoxI	GGCC	3 cut(s)	295, 515, 657
ApeKI	GCWGC	3 cut(s)	111, 273, 571
ApoI	RAATTY	2 cut(s)	85, 696
AspLEI	GCGC	1 cut(s)	473
AspS9I	GGNCC	2 cut(s)	295, 516
AsuC2I	CCSGG	4 cut(s)	241, 519, 588, 630
AsuHPI	GGTGA	2 cut(s)	148, 154
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	98, 260, 558
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BcnI	CCSGG	4 cut(s)	241, 519, 588, 630
BcoDI	GTCTC	1 cut(s)	516
BfmI	CTRYAG	2 cut(s)	572, 732
BisI	GCNGC	3 cut(s)	112, 274, 572
BlsI	GCNGC	3 cut(s)	113, 275, 573
Bme1390I	CCNGG	4 cut(s)	241, 519, 588, 630
BmgT120I	GGNCC	2 cut(s)	295, 516
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	4 cut(s)	241, 519, 588, 630
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	3 cut(s)	106, 370, 693
BmuI	ACTGGG	1 cut(s)	85
BoxI	GACNNNNGTC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	4 cut(s)	241, 519, 588, 630
BsaAI	YACGTR	4 cut(s)	301, 333, 504, 619
BsaBI	GATNNNNATC	1 cut(s)	582
BsaHI	GRCGYC	2 cut(s)	189, 315
BsaJI	CCNNGG	2 cut(s)	372, 480
BsaWI	WCCGGW	2 cut(s)	36, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	246, 373, 635
Bse1I	ACTGG	2 cut(s)	91, 201
Bse8I	GATNNNNATC	1 cut(s)	582
BseAI	TCCGGA	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	372, 480
BseGI	GGATG	2 cut(s)	50, 385
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	3 cut(s)	246, 373, 635
BseMII	CTCAG	2 cut(s)	399, 557
BseNI	ACTGG	2 cut(s)	91, 201
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	3 cut(s)	98, 260, 558
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	3 cut(s)	297, 517, 659
BshNI	GGYRCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	6 cut(s)	37, 165, 240, 519, 587, 629
BsiWI	CGTACG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	3 cut(s)	246, 373, 635
BsmAI	GTCTC	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	297, 517, 659
Bsp1286I	GDGCHC	2 cut(s)	149, 405
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	559
BspACI	CCGC	4 cut(s)	96, 377, 473, 603
BspANI	GGCC	3 cut(s)	297, 517, 659
BspCNI	CTCAG	2 cut(s)	400, 556
BspEI	TCCGGA	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	1 cut(s)	148
BspMAI	CTGCAG	2 cut(s)	576, 736
BspPI	GGATC	1 cut(s)	567
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	91, 201
BssECI	CCNNGG	2 cut(s)	372, 480
BssMI	GATC	1 cut(s)	559
BssNI	GRCGYC	2 cut(s)	189, 315
Bst4CI	ACNGT	2 cut(s)	230, 455
BstACI	GRCGYC	2 cut(s)	189, 315
BstBAI	YACGTR	4 cut(s)	301, 333, 504, 619
BstC8I	GCNNGC	1 cut(s)	708
BstDEI	CTNAG	2 cut(s)	408, 543
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	50, 385
BstFNI	CGCG	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	1 cut(s)	562
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	1 cut(s)	559
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 111, 197, 273, 539
BstPAI	GACNNNNGTC	1 cut(s)	248
BstSCI	CCNGG	4 cut(s)	239, 517, 586, 628
BstSFI	CTRYAG	2 cut(s)	572, 732
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	3 cut(s)	98, 260, 558
BsuRI	GGCC	3 cut(s)	297, 517, 659
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	50, 385
BtsIMutI	CAGTG	3 cut(s)	98, 208, 235
Cac8I	GCNNGC	1 cut(s)	708
CfoI	GCGC	1 cut(s)	473
Cfr13I	GGNCC	2 cut(s)	295, 516
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	4 cut(s)	310, 334, 355, 505
CviQI	GTAC	4 cut(s)	310, 334, 355, 505
DdeI	CTNAG	2 cut(s)	408, 543
DpnI	GATC	1 cut(s)	561
DpnII	GATC	1 cut(s)	559
DraI	TTTAAA	1 cut(s)	694
EciI	GGCGGA	1 cut(s)	392
Eco72I	CACGTG	1 cut(s)	301
FaiI	YATR	8 cut(s)	197, 278, 360, 386, 419, 489, 582, 624
FaqI	GGGAC	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	112, 274, 572
FokI	GGATG	2 cut(s)	57, 392
Fsp4HI	GCNGC	3 cut(s)	112, 274, 572
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	3 cut(s)	112, 274, 572
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	297, 517, 659
HapII	CCGG	6 cut(s)	37, 165, 240, 519, 587, 629
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	473
Hin1I	GRCGYC	2 cut(s)	189, 315
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HincII	GTYRAC	2 cut(s)	208, 451
HindII	GTYRAC	2 cut(s)	208, 451
HinfI	GANTC	4 cut(s)	17, 553, 719, 728
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	6 cut(s)	37, 165, 240, 519, 587, 629
HphI	GGTGA	2 cut(s)	148, 154
Hpy166II	GTNNAC	3 cut(s)	208, 451, 595
Hpy188I	TCNGA	3 cut(s)	481, 546, 564
Hpy188III	TCNNGA	3 cut(s)	37, 78, 557
Hpy8I	GTNNAC	3 cut(s)	208, 451, 595
Hpy99I	CGWCG	3 cut(s)	191, 317, 320
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	230, 455
HpyCH4IV	ACGT	6 cut(s)	170, 300, 315, 332, 503, 618
HpyCH4V	TGCA	4 cut(s)	276, 574, 710, 734
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 111, 197, 273, 539
HpyF3I	CTNAG	2 cut(s)	408, 543
HpySE526I	ACGT	6 cut(s)	170, 300, 315, 332, 503, 618
Hsp92I	GRCGYC	2 cut(s)	189, 315
HspAI	GCGC	1 cut(s)	471
Kpn2I	TCCGGA	1 cut(s)	36
KspAI	GTTAAC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	559
LmnI	GCTCC	1 cut(s)	80
Lsp1109I	GCAGC	3 cut(s)	98, 260, 558
LweI	GCATC	3 cut(s)	106, 370, 693
MaeII	ACGT	6 cut(s)	170, 300, 315, 332, 503, 618
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	1 cut(s)	561
MboI	GATC	1 cut(s)	559
MboII	GAAGA	1 cut(s)	728
MhlI	GDGCHC	2 cut(s)	149, 405
MluCI	AATT	3 cut(s)	85, 212, 696
MnlI	CCTC	4 cut(s)	240, 475, 599, 649
MroI	TCCGGA	1 cut(s)	36
MseI	TTAA	3 cut(s)	173, 207, 693
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	6 cut(s)	37, 165, 240, 519, 587, 629
MspR9I	CCNGG	4 cut(s)	241, 519, 588, 630
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	5 cut(s)	102, 111, 197, 273, 539
NciI	CCSGG	4 cut(s)	241, 519, 588, 630
NdeII	GATC	1 cut(s)	559
NlaIV	GGNNCC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 324
PfeI	GAWTC	4 cut(s)	17, 553, 719, 728
Pfl23II	CGTACG	1 cut(s)	333
PflFI	GACNNNGTC	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	113, 275, 573
PmaCI	CACGTG	1 cut(s)	301
PmlI	CACGTG	1 cut(s)	301
Ppu21I	YACGTR	4 cut(s)	301, 333, 504, 619
PshAI	GACNNNNGTC	1 cut(s)	248
PsiI	TTATAA	1 cut(s)	582
Psp1406I	AACGTT	1 cut(s)	170
PspCI	CACGTG	1 cut(s)	301
PspLI	CGTACG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	295, 516
PstI	CTGCAG	2 cut(s)	576, 736
PsyI	GACNNNGTC	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	267
RsaI	GTAC	4 cut(s)	311, 335, 356, 506
RsaNI	GTAC	4 cut(s)	310, 334, 355, 505
SaqAI	TTAA	3 cut(s)	173, 207, 693
SatI	GCNGC	3 cut(s)	112, 274, 572
Sau3AI	GATC	1 cut(s)	559
Sau96I	GGNCC	2 cut(s)	295, 516
ScrFI	CCNGG	4 cut(s)	241, 519, 588, 630
SduI	GDGCHC	2 cut(s)	149, 405
SfaNI	GCATC	3 cut(s)	106, 370, 693
SfcI	CTRYAG	2 cut(s)	572, 732
Sse9I	AATT	3 cut(s)	85, 212, 696
SsiI	CCGC	4 cut(s)	96, 377, 473, 603
StyD4I	CCNGG	4 cut(s)	239, 517, 586, 628
TaaI	ACNGT	2 cut(s)	230, 455
TaiI	ACGT	6 cut(s)	173, 303, 318, 335, 506, 621
TaqI	TCGA	4 cut(s)	8, 20, 306, 536
TasI	AATT	3 cut(s)	85, 212, 696
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	4 cut(s)	17, 553, 719, 728
Tru1I	TTAA	3 cut(s)	173, 207, 693
Tru9I	TTAA	3 cut(s)	173, 207, 693
TscAI	CASTG	3 cut(s)	98, 208, 235
TseI	GCWGC	3 cut(s)	111, 273, 571
TspDTI	ATGAA	4 cut(s)	44, 191, 657, 741
TspGWI	ACGGA	2 cut(s)	249, 563
TspRI	CASTG	3 cut(s)	98, 208, 235
Tth111I	GACNNNGTC	1 cut(s)	317
XapI	RAATTY	2 cut(s)	85, 696
ZraI	GACGTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.