Rh5AG018200

Chitin elicitor receptor kinase 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
1300695 .. 1305217
4523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG018200.1

Sequence Viewer

Length: 1440 bp
ATGATGCTTGCAGAAGGAAACACACAAATCAAATTGTTCGCCTTCCATGTATTTCTTCTTCTTCTATCATTCACAGCCAAAGCTAAGTGCAAACATGGCTGCCTTGCCTTAGCCTCATACAATGTCTGGGATGGTTCAAACCTCACTTACATTAGCTACATCTTTAGCCAGCAAATCCCTGAAATTCTCAAGTACAACCCTCAAGTCAAGAACTCTGATAGCCTCCAAACTGGTACTCGAATCAACATACCATTTTCTTGTGACTGCTTGAATAGTGATTTTTTGGGACATACGTTCACCTACCTCACCCAATATAGTGATACCTATTACAAAGTTGCCCAGATCGCATTTGCTAATCTCACTACAGAAGAATGGGTGCATAGAGTGAACACTTACACACCAACTCAGATACCTGACAAAGCTCCAATTAACGTAACAGTGAACTGCTCTTGCGGTGATGGAAAGATATCAAAGGATTATGGGTTTTTCTTGACATATCCTCTTCATCCCGGTGAGGGCTTGTCCTCTGTGGCTGCGGAGAGTGGTGTTCCAGCAAGGTTGCTGGAGATGTACAACAAAGTGTCCAACTTTGGTTCAGGCAATGACTTAGTCTTTGTGCCGGCAAGAGATCAAAATGGGACTTTTCCACCATATAAGTCAAGAACAGCTGGTATCTCAAGAGGAGCTATTATTGGTATATGTGCTGGAGGAGCTTCTGCTGCTCTAGCTTTGGCAATTTTCCTATTTGCTTGGGTTTATAGGAGGAAGGTGGTTGAGGCACCATTTCTTTCCACACCGTCTGAAGAGCGCTATCTTCAAATTCAACATACAAATGTTTTAACTTCTGGAATTACTTCTGAGACAACTTCTGATACAGTTGCTCTAGTTAGCGGTTCTTCTCCGGGCCTTATGGGTATAACTGTGGACAAATCAGTGGAGTTCTCATATGAAGAGCTATCCAAAGCTACTAATGACTTCAGCATAAAAATTGGACAGGGTGGGTTTGGAGCTGTTTATTATGCAGAACTCCGAGGCGAGAAAGCAGCAATCAAAAGGATGGATATGCAAGCAACAAAAGAATTCCTTGCTGAACTGAAGGTTCTAACACATGTTCATCACTTAAATCTGGTGCGCTTGATAGGGTATTGTGTCGAGGACTCCTTGTTCCTAGTGTATGAGTACATTGAAAATGGTAACTTAAGTCAGCATTTGCATGGCTCTTCTGGTCTAGGCCCATTGCCATGGCAAACCAGGATGCAAATAGCCTTAGATTCTGCAAGAGGACTAGAATATATCCACGAACACACTGTTCCTGTCTACATTCATCGTGACATCAAGTCAGCAAACATCTTAATAGACAAAAACTTCAGCGCAAAGGTTGTGAAAAAATGCCTTTATTATTACTTTTGGCTTGAATTTTTTCTAAATATAAACATATAG

Protein Analysis

479

Amino Acids

53.31

Weight (kDa)

6.7

Isoelectric Point (pI)

27.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM_RLK PF23577 164 - 207 3e-14 LysM domain
PK_Tyr_Ser-Thr PF07714 328 - 461 2.8e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 329 - 460 5.3e-22 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 778
AccI GTMKAC 1 cut(s) 1317
AciI CCGC 3 cut(s) 453, 536, 891
AcsI RAATTY 4 cut(s) 183, 819, 1079, 1415
AcuI CTGAAG 4 cut(s) 822, 961, 1115, 1351
AfaI GTAC 4 cut(s) 194, 235, 572, 1181
AfeI AGCGCT 1 cut(s) 809
AfiI CCNNNNNNNGG 1 cut(s) 515
AflII CTTAAG 1 cut(s) 1198
AflIII ACRYGT 1 cut(s) 1108
AgsI TTSAA 6 cut(s) 138, 271, 818, 824, 1187, 1415
AhdI GACNNNNNGTC 1 cut(s) 1336
AjnI CCWGG 1 cut(s) 1250
AloI GAACNNNNNNTCC 2 cut(s) 1148, 1180
Alw26I GTCTC 1 cut(s) 854
Aor51HI AGCGCT 1 cut(s) 809
AoxI GGCC 2 cut(s) 904, 1231
ApeKI GCWGC 4 cut(s) 99, 533, 719, 1043
ApoI RAATTY 4 cut(s) 183, 819, 1079, 1415
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
Asp700I GAANNNNTTC 2 cut(s) 853, 1419
AspLEI GCGC 3 cut(s) 810, 1134, 1373
AspS9I GGNCC 2 cut(s) 904, 1232
AsuC2I CCSGG 2 cut(s) 510, 903
AsuHPI GGTGA 4 cut(s) 289, 298, 467, 524
BanI GGYRCC 1 cut(s) 778
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BbvI GCAGC 4 cut(s) 86, 520, 706, 1055
BccI CCATC 3 cut(s) 125, 452, 1051
BciT130I CCWGG 1 cut(s) 1252
BcnI CCSGG 2 cut(s) 510, 903
BcoDI GTCTC 1 cut(s) 854
BfaI CTAG 5 cut(s) 725, 884, 1169, 1229, 1286
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 811
BfrI CTTAAG 1 cut(s) 1198
BisI GCNGC 4 cut(s) 100, 534, 720, 1044
BlsI GCNGC 4 cut(s) 101, 535, 721, 1045
Bme1390I CCNGG 3 cut(s) 510, 903, 1252
BmeRI GACNNNNNGTC 1 cut(s) 1336
BmgT120I GGNCC 2 cut(s) 904, 1232
BmiI GGNNCC 1 cut(s) 780
BmrFI CCNGG 3 cut(s) 510, 903, 1252
BmsI GCATC 1 cut(s) 1245
BpmI CTGGAG 2 cut(s) 584, 726
Bpu10I CCTNAGC 1 cut(s) 109
BpuEI CTTGAG 3 cut(s) 173, 186, 661
BpuMI CCSGG 2 cut(s) 510, 903
BsaJI CCNNGG 2 cut(s) 1030, 1241
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse118I RCCGGY 1 cut(s) 619
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 2 cut(s) 607, 1235
BseBI CCWGG 1 cut(s) 1252
BseDI CCNNGG 2 cut(s) 1030, 1241
BseGI GGATG 4 cut(s) 136, 505, 1062, 1260
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMI GCAATG 2 cut(s) 607, 1235
BseMII CTCAG 2 cut(s) 419, 849
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 2 cut(s) 696, 723
BseXI GCAGC 4 cut(s) 86, 520, 706, 1055
BshFI GGCC 2 cut(s) 906, 1233
BshNI GGYRCC 1 cut(s) 778
BsiSI CCGG 3 cut(s) 510, 620, 902
BslFI GGGAC 2 cut(s) 300, 652
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 1 cut(s) 854
BsmFI GGGAC 2 cut(s) 300, 652
BsnI GGCC 2 cut(s) 906, 1233
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 2 cut(s) 342, 628
Bsp19I CCATGG 1 cut(s) 1241
BspACI CCGC 3 cut(s) 453, 536, 891
BspANI GGCC 2 cut(s) 906, 1233
BspCNI CTCAG 2 cut(s) 418, 850
BspLI GGNNCC 1 cut(s) 780
BspQI GCTCTTC 3 cut(s) 798, 945, 1225
BspT107I GGYRCC 1 cut(s) 778
BspTI CTTAAG 1 cut(s) 1198
BsrDI GCAATG 2 cut(s) 607, 1235
BsrFI RCCGGY 1 cut(s) 619
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 2 cut(s) 1030, 1241
BssMI GATC 2 cut(s) 342, 628
BssT1I CCWWGG 1 cut(s) 1241
Bst2UI CCWGG 1 cut(s) 1252
Bst4CI ACNGT 5 cut(s) 439, 798, 877, 922, 1309
Bst6I CTCTTC 4 cut(s) 507, 798, 945, 1225
BstAFI CTTAAG 1 cut(s) 1198
BstAUI TGTACA 1 cut(s) 570
BstC8I GCNNGC 4 cut(s) 9, 170, 621, 1068
BstDEI CTNAG 6 cut(s) 84, 109, 405, 607, 858, 1267
BstDSI CCRYGG 1 cut(s) 1241
BstF5I GGATG 4 cut(s) 136, 505, 1062, 1260
BstH2I RGCGCY 1 cut(s) 811
BstHHI GCGC 3 cut(s) 810, 1134, 1373
BstKTI GATC 2 cut(s) 345, 631
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 2 cut(s) 342, 628
BstMWI GCNNNNNNNGC 5 cut(s) 96, 344, 710, 719, 725
BstNI CCWGG 1 cut(s) 1252
BstNSI RCATGY 1 cut(s) 1112
BstSCI CCNGG 3 cut(s) 508, 901, 1250
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 4 cut(s) 86, 520, 706, 1055
BstXI CCANNNNNNTGG 1 cut(s) 1242
BsuRI GGCC 2 cut(s) 906, 1233
BtgI CCRYGG 1 cut(s) 1241
BtsCI GGATG 4 cut(s) 136, 505, 1062, 1260
BtsIMutI CAGTG 3 cut(s) 444, 939, 1305
Cac8I GCNNGC 4 cut(s) 9, 170, 621, 1068
CfoI GCGC 3 cut(s) 810, 1134, 1373
Cfr10I RCCGGY 1 cut(s) 619
Cfr13I GGNCC 2 cut(s) 904, 1232
Csp6I GTAC 4 cut(s) 193, 234, 571, 1180
CviAII CATG 5 cut(s) 47, 95, 1109, 1214, 1242
CviQI GTAC 4 cut(s) 193, 234, 571, 1180
DdeI CTNAG 6 cut(s) 84, 109, 405, 607, 858, 1267
DpnI GATC 2 cut(s) 344, 630
DpnII GATC 2 cut(s) 342, 628
DriI GACNNNNNGTC 1 cut(s) 1336
Eam1104I CTCTTC 4 cut(s) 507, 798, 945, 1225
Eam1105I GACNNNNNGTC 1 cut(s) 1336
EarI CTCTTC 4 cut(s) 507, 798, 945, 1225
Eco130I CCWWGG 1 cut(s) 1241
Eco32I GATATC 1 cut(s) 468
Eco47III AGCGCT 1 cut(s) 809
Eco57I CTGAAG 4 cut(s) 822, 961, 1115, 1351
EcoRI GAATTC 1 cut(s) 1079
EcoRII CCWGG 1 cut(s) 1250
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 1241
ErhI CCWWGG 1 cut(s) 1241
FaeI CATG 5 cut(s) 50, 98, 1112, 1217, 1245
FalI AAGNNNNNCTT 2 cut(s) 1068, 1100
FaqI GGGAC 2 cut(s) 300, 652
FatI CATG 5 cut(s) 46, 94, 1108, 1213, 1241
FauNDI CATATG 1 cut(s) 946
FblI GTMKAC 1 cut(s) 1317
Fnu4HI GCNGC 4 cut(s) 100, 534, 720, 1044
FokI GGATG 4 cut(s) 143, 492, 1069, 1267
Fsp4HI GCNGC 4 cut(s) 100, 534, 720, 1044
FspBI CTAG 5 cut(s) 725, 884, 1169, 1229, 1286
GlaI GCGC 3 cut(s) 809, 1133, 1372
GluI GCNGC 4 cut(s) 100, 534, 720, 1044
GsuI CTGGAG 2 cut(s) 584, 726
HaeII RGCGCY 1 cut(s) 811
HaeIII GGCC 2 cut(s) 906, 1233
HapII CCGG 3 cut(s) 510, 620, 902
HhaI GCGC 3 cut(s) 810, 1134, 1373
Hin1II CATG 5 cut(s) 50, 98, 1112, 1217, 1245
Hin6I GCGC 3 cut(s) 808, 1132, 1371
HinP1I GCGC 3 cut(s) 808, 1132, 1371
HinfI GANTC 3 cut(s) 240, 1157, 1271
HpaII CCGG 3 cut(s) 510, 620, 902
HphI GGTGA 4 cut(s) 289, 298, 467, 524
Hpy166II GTNNAC 5 cut(s) 297, 388, 442, 925, 1318
Hpy188I TCNGA 6 cut(s) 217, 408, 802, 859, 871, 1031
Hpy188III TCNNGA 6 cut(s) 208, 490, 660, 678, 846, 1328
Hpy8I GTNNAC 5 cut(s) 297, 388, 442, 925, 1318
HpyAV CCTTC 4 cut(s) 8, 52, 760, 1090
HpyCH4III ACNGT 5 cut(s) 439, 798, 877, 922, 1309
HpyCH4IV ACGT 2 cut(s) 293, 432
HpyCH4V TGCA 8 cut(s) 11, 90, 379, 1022, 1066, 1213, 1258, 1277
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 344, 710, 719, 725
HpyF3I CTNAG 6 cut(s) 84, 109, 405, 607, 858, 1267
HpySE526I ACGT 2 cut(s) 293, 432
Hsp92II CATG 5 cut(s) 50, 98, 1112, 1217, 1245
HspAI GCGC 3 cut(s) 808, 1132, 1371
KroI GCCGGC 1 cut(s) 619
KroNI GCCGGC 1 cut(s) 621
Kzo9I GATC 2 cut(s) 342, 628
LguI GCTCTTC 3 cut(s) 798, 945, 1225
LmnI GCTCC 4 cut(s) 427, 683, 710, 1007
Lsp1109I GCAGC 4 cut(s) 86, 520, 706, 1055
LweI GCATC 1 cut(s) 1245
MaeI CTAG 5 cut(s) 725, 884, 1169, 1229, 1286
MaeII ACGT 2 cut(s) 293, 432
MaeIII GTNAC 4 cut(s) 260, 433, 1193, 1328
MalI GATC 2 cut(s) 344, 630
MboI GATC 2 cut(s) 342, 628
MluCI AATT 9 cut(s) 32, 183, 426, 735, 819, 849, 987, 1079, 1415
MlyI GAGTC 1 cut(s) 1151
MmeI TCCRAC 1 cut(s) 609
MroNI GCCGGC 1 cut(s) 619
MroXI GAANNNNTTC 2 cut(s) 853, 1419
MseI TTAA 5 cut(s) 429, 839, 1121, 1199, 1352
MslI CAYNNNNRTG 4 cut(s) 510, 831, 1212, 1240
MspA1I CMGCKG 1 cut(s) 668
MspCI CTTAAG 1 cut(s) 1198
MspI CCGG 3 cut(s) 510, 620, 902
MspR9I CCNGG 3 cut(s) 510, 903, 1252
MvaI CCWGG 1 cut(s) 1252
MwoI GCNNNNNNNGC 5 cut(s) 96, 344, 710, 719, 725
NaeI GCCGGC 1 cut(s) 621
NciI CCSGG 2 cut(s) 510, 903
NcoI CCATGG 1 cut(s) 1241
NdeI CATATG 1 cut(s) 946
NdeII GATC 2 cut(s) 342, 628
NgoMIV GCCGGC 1 cut(s) 619
NlaIII CATG 5 cut(s) 50, 98, 1112, 1217, 1245
NlaIV GGNNCC 1 cut(s) 780
NmuCI GTSAC 2 cut(s) 260, 1328
NspI RCATGY 1 cut(s) 1112
PciI ACATGT 1 cut(s) 1108
PciSI GCTCTTC 3 cut(s) 798, 945, 1225
PdiI GCCGGC 1 cut(s) 621
PdmI GAANNNNTTC 2 cut(s) 853, 1419
PfeI GAWTC 2 cut(s) 240, 1271
PflFI GACNNNGTC 1 cut(s) 608
PkrI GCNGC 4 cut(s) 101, 535, 721, 1045
PleI GAGTC 1 cut(s) 1151
PpsI GAGTC 1 cut(s) 1151
PscI ACATGT 1 cut(s) 1108
Psp6I CCWGG 1 cut(s) 1250
PspGI CCWGG 1 cut(s) 1250
PspN4I GGNNCC 1 cut(s) 780
PspPI GGNCC 2 cut(s) 904, 1232
PsyI GACNNNGTC 1 cut(s) 608
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 4 cut(s) 194, 235, 572, 1181
RsaNI GTAC 4 cut(s) 193, 234, 571, 1180
RseI CAYNNNNRTG 4 cut(s) 510, 831, 1212, 1240
SapI GCTCTTC 3 cut(s) 798, 945, 1225
SaqAI TTAA 5 cut(s) 429, 839, 1121, 1199, 1352
SatI GCNGC 4 cut(s) 100, 534, 720, 1044
Sau3AI GATC 2 cut(s) 342, 628
Sau96I GGNCC 2 cut(s) 904, 1232
SchI GAGTC 1 cut(s) 1151
ScrFI CCNGG 3 cut(s) 510, 903, 1252
SfaNI GCATC 1 cut(s) 1245
SfcI CTRYAG 1 cut(s) 363
SmiMI CAYNNNNRTG 4 cut(s) 510, 831, 1212, 1240
SmlI CTYRAG 4 cut(s) 188, 201, 676, 1198
SmoI CTYRAG 4 cut(s) 188, 201, 676, 1198
Sse9I AATT 9 cut(s) 32, 183, 426, 735, 819, 849, 987, 1079, 1415
SsiI CCGC 3 cut(s) 453, 536, 891
SspMI CTAG 5 cut(s) 725, 884, 1169, 1229, 1286
StyD4I CCNGG 3 cut(s) 508, 901, 1250
StyI CCWWGG 1 cut(s) 1241
TaaI ACNGT 5 cut(s) 439, 798, 877, 922, 1309
TaiI ACGT 2 cut(s) 296, 435
TaqI TCGA 2 cut(s) 238, 1152
TasI AATT 9 cut(s) 32, 183, 426, 735, 819, 849, 987, 1079, 1415
TatI WGTACW 3 cut(s) 192, 570, 1179
TfiI GAWTC 2 cut(s) 240, 1271
Tru1I TTAA 5 cut(s) 429, 839, 1121, 1199, 1352
Tru9I TTAA 5 cut(s) 429, 839, 1121, 1199, 1352
TscAI CASTG 3 cut(s) 444, 939, 1312
TseFI GTSAC 2 cut(s) 260, 1328
TseI GCWGC 4 cut(s) 99, 533, 719, 1043
Tsp45I GTSAC 2 cut(s) 260, 1328
TspDTI ATGAA 4 cut(s) 494, 963, 1103, 1313
TspRI CASTG 3 cut(s) 444, 939, 1312
Tth111I GACNNNGTC 1 cut(s) 608
Vha464I CTTAAG 1 cut(s) 1198
XapI RAATTY 4 cut(s) 183, 819, 1079, 1415
XceI RCATGY 1 cut(s) 1112
XmiI GTMKAC 1 cut(s) 1317
XmnI GAANNNNTTC 2 cut(s) 853, 1419
XspI CTAG 5 cut(s) 725, 884, 1169, 1229, 1286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.