Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037966.1

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2333

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037966.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1003 bp

agttgctctagttagtggttcttctccgggccttatgggtataactgtggacaaatcagtggagttctcatatgaagagctatccaaagctactaatgacttcagcaaaaaaattggacagggtgggtttggagctgtttattatgcagaactccgaggcgagaaagcagcaatcaaaaggatggatatgcaagcaacaaaagaattccttgctgaactgaaggttctaacacatgttcatcacttaaatctggtgcgcttgatagggtattgtgtcgaggactccttgttcctagtgtatgagtacattgaaaatggtaacttaagtcaacatttgcatggctcttctggtctaggcccattgccatggcaaaccaggatgcaaatagccttagattctgcaagaggactagaatatatccacgaacacactgttcctgtctacattcatcgtgacatcaagtcagcaaacatcttaatagacaaaaacttccgcgcaaaggttgcagatttcggactaacaaaactgtctgaatatggaagtgcttcactgcagacacgtcttgtgggtacattcggatacatgcctccagagtatgctcaatatggtgatgtctcccccaaaatcgatgtttatgcttttggtgttgtactttttgaattaatatctgccaaggaagctgttgtgagaacaaatgaatatgttactgaatcgagaggacttgttgatttgtttgaaagtgttcttagccagcctgatccgagaaaagatcttggtaaacttgtcgaccccaggctcagcagcgatgattactcacctgactcggtctacaagatggctcaacttgccagagcttgcacacaagagaatcctcaactgaggccaagcatgagatcaattgtcgttgcgctaatgacactttcatcatcaactgaggaatgggatgttggttcgttttatgaaaatcacacagatctagtcaatctaatgtcagggaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

333

Amino Acids

37.08

Weight (kDa)

5.53

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	442, 787, 829
AccII	CGCG	1 cut(s)	496
AciI	CCGC	1 cut(s)	494
AclWI	GGATC	1 cut(s)	753
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	2 cut(s)	86, 240
AfaI	GTAC	3 cut(s)	306, 572, 652
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflII	CTTAAG	1 cut(s)	323
AflIII	ACRYGT	2 cut(s)	233, 558
AgsI	TTSAA	3 cut(s)	312, 660, 738
AhdI	GACNNNNNGTC	1 cut(s)	461
AjiI	CACGTC	1 cut(s)	561
AjnI	CCWGG	2 cut(s)	375, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	931, 963
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	5 cut(s)	80, 90, 135, 681, 855
AluI	AGCT	5 cut(s)	80, 90, 135, 681, 855
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	1 cut(s)	753
AoxI	GGCC	3 cut(s)	29, 356, 882
ApeKI	GCWGC	2 cut(s)	168, 802
ApoI	RAATTY	1 cut(s)	204
AseI	ATTAAT	1 cut(s)	663
Asp700I	GAANNNNTTC	2 cut(s)	545, 742
AspLEI	GCGC	3 cut(s)	259, 498, 911
AspS9I	GGNCC	2 cut(s)	29, 357
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	621, 808
BbvI	GCAGC	2 cut(s)	180, 814
BccI	CCATC	2 cut(s)	176, 830
BcgI	CGANNNNNNTGC	2 cut(s)	618, 652
BciT130I	CCWGG	2 cut(s)	377, 794
BciVI	GTATCC	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	5 cut(s)	9, 294, 354, 411, 978
BfmI	CTRYAG	1 cut(s)	552
BfrI	CTTAAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	573
BglII	AGATCT	2 cut(s)	770, 974
BisI	GCNGC	2 cut(s)	169, 803
BlpI	GCTNAGC	1 cut(s)	798
BlsI	GCNGC	2 cut(s)	170, 804
Bme1390I	CCNGG	3 cut(s)	28, 377, 794
BmeRI	GACNNNNNGTC	1 cut(s)	461
BmgBI	CACGTC	1 cut(s)	561
BmgT120I	GGNCC	2 cut(s)	29, 357
BmrFI	CCNGG	3 cut(s)	28, 377, 794
BmsI	GCATC	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	574
Bpu1102I	GCTNAGC	1 cut(s)	798
BpuMI	CCSGG	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	628
BsaJI	CCNNGG	4 cut(s)	155, 366, 673, 792
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	377, 794
BseCI	ATCGAT	1 cut(s)	628
BseDI	CCNNGG	4 cut(s)	155, 366, 673, 792
BseGI	GGATG	3 cut(s)	187, 385, 950
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	3 cut(s)	812, 870, 925
BseXI	GCAGC	2 cut(s)	180, 814
Bsh1236I	CGCG	1 cut(s)	496
BshFI	GGCC	3 cut(s)	31, 358, 884
BshVI	ATCGAT	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	620
BsnI	GGCC	3 cut(s)	31, 358, 884
Bsp143I	GATC	4 cut(s)	758, 770, 894, 974
Bsp1720I	GCTNAGC	1 cut(s)	798
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	1 cut(s)	494
BspANI	GGCC	3 cut(s)	31, 358, 884
BspCNI	CTCAG	3 cut(s)	811, 871, 926
BspDI	ATCGAT	1 cut(s)	628
BspFNI	CGCG	1 cut(s)	496
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	1 cut(s)	753
BspQI	GCTCTTC	2 cut(s)	70, 350
BspTI	CTTAAG	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	360
BssECI	CCNNGG	4 cut(s)	155, 366, 673, 792
BssMI	GATC	4 cut(s)	758, 770, 894, 974
BssT1I	CCWWGG	2 cut(s)	366, 673
Bst2UI	CCWGG	2 cut(s)	377, 794
Bst4CI	ACNGT	3 cut(s)	47, 434, 529
Bst6I	CTCTTC	2 cut(s)	70, 350
BstAFI	CTTAAG	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	504
BstC8I	GCNNGC	3 cut(s)	193, 753, 857
BstDEI	CTNAG	5 cut(s)	392, 747, 798, 879, 934
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	187, 385, 950
BstFNI	CGCG	1 cut(s)	496
BstHHI	GCGC	3 cut(s)	259, 498, 911
BstKTI	GATC	4 cut(s)	761, 773, 897, 977
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	4 cut(s)	758, 770, 894, 974
BstMWI	GCNNNNNNNGC	3 cut(s)	504, 678, 846
BstNI	CCWGG	2 cut(s)	377, 794
BstNSI	RCATGY	2 cut(s)	237, 587
BstSCI	CCNGG	3 cut(s)	26, 375, 792
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	1 cut(s)	496
BstV1I	GCAGC	2 cut(s)	180, 814
BstX2I	RGATCY	2 cut(s)	770, 974
BstXI	CCANNNNNNTGG	1 cut(s)	367
BstYI	RGATCY	2 cut(s)	770, 974
Bsu15I	ATCGAT	1 cut(s)	628
BsuI	GTATCC	1 cut(s)	573
BsuRI	GGCC	3 cut(s)	31, 358, 884
BsuTUI	ATCGAT	1 cut(s)	628
BtgI	CCRYGG	1 cut(s)	366
BtgZI	GCGATG	1 cut(s)	820
BtrI	CACGTC	1 cut(s)	561
BtsCI	GGATG	3 cut(s)	187, 385, 950
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	3 cut(s)	64, 430, 549
Cac8I	GCNNGC	3 cut(s)	193, 753, 857
CfoI	GCGC	3 cut(s)	259, 498, 911
Cfr13I	GGNCC	2 cut(s)	29, 357
ClaI	ATCGAT	1 cut(s)	628
Csp6I	GTAC	3 cut(s)	305, 571, 651
CviAII	CATG	5 cut(s)	234, 339, 367, 584, 890
CviQI	GTAC	3 cut(s)	305, 571, 651
DdeI	CTNAG	5 cut(s)	392, 747, 798, 879, 934
DpnI	GATC	4 cut(s)	760, 772, 896, 976
DpnII	GATC	4 cut(s)	758, 770, 894, 974
DriI	GACNNNNNGTC	1 cut(s)	461
Eam1104I	CTCTTC	2 cut(s)	70, 350
Eam1105I	GACNNNNNGTC	1 cut(s)	461
EarI	CTCTTC	2 cut(s)	70, 350
Eco130I	CCWWGG	2 cut(s)	366, 673
Eco57I	CTGAAG	2 cut(s)	86, 240
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	375, 792
EcoT14I	CCWWGG	2 cut(s)	366, 673
ErhI	CCWWGG	2 cut(s)	366, 673
FaeI	CATG	5 cut(s)	237, 342, 370, 587, 893
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FatI	CATG	5 cut(s)	233, 338, 366, 583, 889
FauNDI	CATATG	1 cut(s)	71
FblI	GTMKAC	3 cut(s)	442, 787, 829
Fnu4HI	GCNGC	2 cut(s)	169, 803
FokI	GGATG	3 cut(s)	194, 392, 957
Fsp4HI	GCNGC	2 cut(s)	169, 803
FspBI	CTAG	5 cut(s)	9, 294, 354, 411, 978
GlaI	GCGC	3 cut(s)	258, 497, 910
GluI	GCNGC	2 cut(s)	169, 803
GsuI	CTGGAG	1 cut(s)	574
HaeIII	GGCC	3 cut(s)	31, 358, 884
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	3 cut(s)	259, 498, 911
Hin1II	CATG	5 cut(s)	237, 342, 370, 587, 893
Hin6I	GCGC	3 cut(s)	257, 496, 909
HinP1I	GCGC	3 cut(s)	257, 496, 909
HincII	GTYRAC	2 cut(s)	330, 788
HindII	GTYRAC	2 cut(s)	330, 788
HinfI	GANTC	5 cut(s)	282, 396, 711, 822, 869
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	621, 808
Hpy166II	GTNNAC	6 cut(s)	50, 330, 443, 780, 788, 830
Hpy188I	TCNGA	5 cut(s)	156, 516, 533, 579, 763
Hpy188III	TCNNGA	3 cut(s)	453, 591, 715
Hpy8I	GTNNAC	6 cut(s)	50, 330, 443, 780, 788, 830
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	3 cut(s)	47, 434, 529
HpyCH4IV	ACGT	1 cut(s)	560
HpyCH4V	TGCA	8 cut(s)	147, 191, 338, 383, 402, 507, 554, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	504, 678, 846
HpyF3I	CTNAG	5 cut(s)	392, 747, 798, 879, 934
HpySE526I	ACGT	1 cut(s)	560
Hsp92II	CATG	5 cut(s)	237, 342, 370, 587, 893
HspAI	GCGC	3 cut(s)	257, 496, 909
Kzo9I	GATC	4 cut(s)	758, 770, 894, 974
LguI	GCTCTTC	2 cut(s)	70, 350
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	2 cut(s)	180, 814
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	5 cut(s)	9, 294, 354, 411, 978
MaeII	ACGT	1 cut(s)	560
MaeIII	GTNAC	3 cut(s)	318, 453, 704
MalI	GATC	4 cut(s)	760, 772, 896, 976
MboI	GATC	4 cut(s)	758, 770, 894, 974
MboII	GAAGA	3 cut(s)	13, 87, 337
MfeI	CAATTG	1 cut(s)	898
MflI	RGATCY	2 cut(s)	770, 974
MluCI	AATT	4 cut(s)	112, 204, 660, 898
MlyI	GAGTC	2 cut(s)	276, 816
MnlI	CCTC	9 cut(s)	150, 272, 399, 598, 711, 874, 883, 929, 991
MroXI	GAANNNNTTC	2 cut(s)	545, 742
MseI	TTAA	4 cut(s)	246, 324, 477, 663
MslI	CAYNNNNRTG	2 cut(s)	337, 365
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	3 cut(s)	28, 377, 794
MunI	CAATTG	1 cut(s)	898
MvaI	CCWGG	2 cut(s)	377, 794
MvnI	CGCG	1 cut(s)	496
MwoI	GCNNNNNNNGC	3 cut(s)	504, 678, 846
NciI	CCSGG	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	366
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	4 cut(s)	758, 770, 894, 974
NlaIII	CATG	5 cut(s)	237, 342, 370, 587, 893
NmuCI	GTSAC	1 cut(s)	453
NspI	RCATGY	2 cut(s)	237, 587
PciI	ACATGT	1 cut(s)	233
PciSI	GCTCTTC	2 cut(s)	70, 350
PdmI	GAANNNNTTC	2 cut(s)	545, 742
PfeI	GAWTC	3 cut(s)	396, 711, 869
PflFI	GACNNNGTC	1 cut(s)	825
PkrI	GCNGC	2 cut(s)	170, 804
PleI	GAGTC	2 cut(s)	276, 816
PpsI	GAGTC	2 cut(s)	276, 816
PscI	ACATGT	1 cut(s)	233
PshBI	ATTAAT	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	375, 792
PspGI	CCWGG	2 cut(s)	375, 792
PspPI	GGNCC	2 cut(s)	29, 357
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	2 cut(s)	770, 974
PsyI	GACNNNGTC	1 cut(s)	825
RsaI	GTAC	3 cut(s)	306, 572, 652
RsaNI	GTAC	3 cut(s)	305, 571, 651
RseI	CAYNNNNRTG	2 cut(s)	337, 365
SalI	GTCGAC	1 cut(s)	786
SapI	GCTCTTC	2 cut(s)	70, 350
SaqAI	TTAA	4 cut(s)	246, 324, 477, 663
SatI	GCNGC	2 cut(s)	169, 803
Sau3AI	GATC	4 cut(s)	758, 770, 894, 974
Sau96I	GGNCC	2 cut(s)	29, 357
SchI	GAGTC	2 cut(s)	276, 816
ScrFI	CCNGG	3 cut(s)	28, 377, 794
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	1 cut(s)	552
SmiMI	CAYNNNNRTG	2 cut(s)	337, 365
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	112, 204, 660, 898
SsiI	CCGC	1 cut(s)	494
SspMI	CTAG	5 cut(s)	9, 294, 354, 411, 978
StyD4I	CCNGG	3 cut(s)	26, 375, 792
StyI	CCWWGG	2 cut(s)	366, 673
TaaI	ACNGT	3 cut(s)	47, 434, 529
TaiI	ACGT	1 cut(s)	563
TaqI	TCGA	4 cut(s)	277, 628, 714, 787
TaqII	GACCGA	1 cut(s)	815
TasI	AATT	4 cut(s)	112, 204, 660, 898
TatI	WGTACW	2 cut(s)	304, 650
TfiI	GAWTC	3 cut(s)	396, 711, 869
Tru1I	TTAA	4 cut(s)	246, 324, 477, 663
Tru9I	TTAA	4 cut(s)	246, 324, 477, 663
TscAI	CASTG	3 cut(s)	64, 437, 556
TseFI	GTSAC	1 cut(s)	453
TseI	GCWGC	2 cut(s)	168, 802
Tsp45I	GTSAC	1 cut(s)	453
TspDTI	ATGAA	6 cut(s)	88, 228, 438, 712, 913, 976
TspRI	CASTG	3 cut(s)	64, 437, 556
Tth111I	GACNNNGTC	1 cut(s)	825
Vha464I	CTTAAG	1 cut(s)	323
VspI	ATTAAT	1 cut(s)	663
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	2 cut(s)	237, 587
XmiI	GTMKAC	3 cut(s)	442, 787, 829
XmnI	GAANNNNTTC	2 cut(s)	545, 742
XspI	CTAG	5 cut(s)	9, 294, 354, 411, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.