Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8437957.1

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1559

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8437957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 779 bp

caaaacatctccggcttctgcattctatacgacaacgaaatcgaaaaaattctccgatagacgacagtcccagaattgtcgtattgggatctcattggacaggcatcgctgtaatgttcttcatctccatgacccagtctctgttccggtagaagaaatcaactcaaaaccgcttgaagactatacccccagaatagtcaccactccatggtccaaaaaacccaccgaaaagcattcatctttgtctctagaaccagcaacccagttgatggtttcgatttttgaatcgacccagatgaagttccggattggatgtgtgttgtttgttgtgttatgtatttgttctggagcaaattcccagtgcggtagtagccaaagctgcgatgctttgggttcttattacttatggcagggcaccaatctcaccttcaccggaacgttaatgaacaccagcgacgccatcatcgccagtgttaacaaattgccggacaaggacagtgttcaatccgggacgagggtcaatgttccgttcagctgtggctgcataaatggttcgtttctgggccacgtgttcgagtacgacgtcgtcaaaggcgacacgtacgaaaaggttgcgagtttgtactatgccaacctgaccacggcggatgctatggcgtggttcaatgagtattctgagattgacatacccgataatgcgaagctgaatgtggtggtcaactgttcgtgtgggaatagcgcggtttccgaggactatgggttgtttatcacgtacccac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

259

Amino Acids

28.53

Weight (kDa)

5.97

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	414
AccB7I	CCANNNNNTGG	2 cut(s)	208, 269
AccII	CGCG	1 cut(s)	741
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	4 cut(s)	171, 364, 645, 741
AclI	AACGTT	1 cut(s)	438
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	48, 353
AcvI	CACGTG	1 cut(s)	569
AcyI	GRCGYC	2 cut(s)	457, 583
AfaI	GTAC	4 cut(s)	579, 603, 624, 774
AfiI	CCNNNNNNNGG	4 cut(s)	208, 269, 514, 641
AflIII	ACRYGT	2 cut(s)	568, 598
AgsI	TTSAA	4 cut(s)	177, 285, 504, 665
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	3 cut(s)	379, 535, 704
AluI	AGCT	3 cut(s)	379, 535, 704
Alw26I	GTCTC	2 cut(s)	143, 250
AlwI	GGATC	1 cut(s)	96
AlwNI	CAGNNNCTG	1 cut(s)	141
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	1 cut(s)	563
ApeKI	GCWGC	2 cut(s)	379, 541
ApoI	RAATTY	2 cut(s)	48, 353
Asp700I	GAANNNNTTC	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	2 cut(s)	211, 563
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	3 cut(s)	191, 416, 422
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	414
BbrPI	CACGTG	1 cut(s)	569
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	366, 528
BccI	CCATC	2 cut(s)	263, 468
BceAI	ACGGC	1 cut(s)	658
BcgI	CGANNNNNNTGC	2 cut(s)	594, 628
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	2 cut(s)	143, 250
BfaI	CTAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	380, 542
BlsI	GCNGC	2 cut(s)	381, 543
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	211, 563
BmiI	GGNNCC	1 cut(s)	416
BmrFI	CCNGG	1 cut(s)	509
BmrI	ACTGGG	3 cut(s)	129, 257, 353
BmsI	GCATC	3 cut(s)	113, 374, 638
BmuI	ACTGGG	3 cut(s)	129, 257, 353
BoxI	GACNNNNGTC	2 cut(s)	65, 516
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	367
BpuMI	CCSGG	1 cut(s)	509
BsaAI	YACGTR	3 cut(s)	569, 601, 772
BsaHI	GRCGYC	2 cut(s)	457, 583
BsaJI	CCNNGG	3 cut(s)	207, 640, 748
BsaWI	WCCGGW	3 cut(s)	146, 304, 432
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 269, 514, 641
Bse1I	ACTGG	4 cut(s)	135, 263, 359, 469
BseAI	TCCGGA	1 cut(s)	304
BseDI	CCNNGG	3 cut(s)	207, 640, 748
BseGI	GGATG	2 cut(s)	318, 653
BseLI	CCNNNNNNNGG	4 cut(s)	208, 269, 514, 641
BseMII	CTCAG	1 cut(s)	667
BseNI	ACTGG	4 cut(s)	135, 263, 359, 469
BseSI	GKGCMC	1 cut(s)	417
BseXI	GCAGC	2 cut(s)	366, 528
Bsh1236I	CGCG	1 cut(s)	741
BshFI	GGCC	1 cut(s)	565
BshNI	GGYRCC	1 cut(s)	414
BsiSI	CCGG	6 cut(s)	12, 147, 305, 433, 486, 508
BsiWI	CGTACG	1 cut(s)	601
BslFI	GGGAC	2 cut(s)	53, 524
BslI	CCNNNNNNNGG	4 cut(s)	208, 269, 514, 641
BsmAI	GTCTC	2 cut(s)	143, 250
BsmFI	GGGAC	2 cut(s)	53, 524
BsmI	GAATGC	2 cut(s)	21, 233
BsnI	GGCC	1 cut(s)	565
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp13I	TCCGGA	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	88
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	4 cut(s)	171, 364, 645, 741
BspANI	GGCC	1 cut(s)	565
BspCNI	CTCAG	1 cut(s)	668
BspEI	TCCGGA	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	416
BspPI	GGATC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	414
BsrI	ACTGG	4 cut(s)	135, 263, 359, 469
BssECI	CCNNGG	3 cut(s)	207, 640, 748
BssMI	GATC	1 cut(s)	88
BssNI	GRCGYC	2 cut(s)	457, 583
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	3 cut(s)	67, 498, 723
BstACI	GRCGYC	2 cut(s)	457, 583
BstBAI	YACGTR	3 cut(s)	569, 601, 772
BstDEI	CTNAG	1 cut(s)	676
BstDSI	CCRYGG	2 cut(s)	207, 640
BstF5I	GGATG	2 cut(s)	318, 653
BstFNI	CGCG	1 cut(s)	741
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	2 cut(s)	143, 250
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	4 cut(s)	370, 379, 465, 541
BstPAI	GACNNNNGTC	2 cut(s)	65, 516
BstSCI	CCNGG	1 cut(s)	507
BstSLI	GKGCMC	1 cut(s)	417
BstUI	CGCG	1 cut(s)	741
BstV1I	GCAGC	2 cut(s)	366, 528
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	565
BtgI	CCRYGG	2 cut(s)	207, 640
BtgZI	GCGATG	3 cut(s)	90, 397, 449
BtsCI	GGATG	2 cut(s)	318, 653
BtsIMutI	CAGTG	3 cut(s)	366, 476, 503
CaiI	CAGNNNCTG	1 cut(s)	141
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	2 cut(s)	211, 563
CseI	GACGC	1 cut(s)	465
Csp6I	GTAC	4 cut(s)	578, 602, 623, 773
CviAII	CATG	2 cut(s)	129, 208
CviJI	RGCY	7 cut(s)	15, 373, 379, 535, 541, 565, 704
CviKI_1	RGCY	7 cut(s)	15, 373, 379, 535, 541, 565, 704
CviQI	GTAC	4 cut(s)	578, 602, 623, 773
DdeI	CTNAG	1 cut(s)	676
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	660
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	211
Eco72I	CACGTG	1 cut(s)	569
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	132, 211
FaqI	GGGAC	2 cut(s)	53, 524
FatI	CATG	2 cut(s)	128, 207
Fnu4HI	GCNGC	2 cut(s)	380, 542
FokI	GGATG	2 cut(s)	325, 660
Fsp4HI	GCNGC	2 cut(s)	380, 542
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	2 cut(s)	380, 542
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	565
HapII	CCGG	6 cut(s)	12, 147, 305, 433, 486, 508
HgaI	GACGC	1 cut(s)	465
HhaI	GCGC	1 cut(s)	741
Hin1I	GRCGYC	2 cut(s)	457, 583
Hin1II	CATG	2 cut(s)	132, 211
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HincII	GTYRAC	2 cut(s)	476, 719
HindII	GTYRAC	2 cut(s)	476, 719
HinfI	GANTC	1 cut(s)	285
HpaI	GTTAAC	1 cut(s)	476
HpaII	CCGG	6 cut(s)	12, 147, 305, 433, 486, 508
HphI	GGTGA	3 cut(s)	191, 416, 422
Hpy166II	GTNNAC	2 cut(s)	476, 719
Hpy188I	TCNGA	3 cut(s)	56, 677, 749
Hpy188III	TCNNGA	3 cut(s)	249, 305, 346
Hpy8I	GTNNAC	2 cut(s)	476, 719
Hpy99I	CGWCG	3 cut(s)	459, 585, 588
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	3 cut(s)	67, 498, 723
HpyCH4IV	ACGT	5 cut(s)	438, 568, 583, 600, 771
HpyCH4V	TGCA	2 cut(s)	21, 544
HpyF10VI	GCNNNNNNNGC	4 cut(s)	370, 379, 465, 541
HpyF3I	CTNAG	1 cut(s)	676
HpySE526I	ACGT	5 cut(s)	438, 568, 583, 600, 771
Hsp92I	GRCGYC	2 cut(s)	457, 583
Hsp92II	CATG	2 cut(s)	132, 211
HspAI	GCGC	1 cut(s)	739
Kpn2I	TCCGGA	1 cut(s)	304
KspAI	GTTAAC	1 cut(s)	476
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	2 cut(s)	366, 528
LweI	GCATC	3 cut(s)	113, 374, 638
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	5 cut(s)	438, 568, 583, 600, 771
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	3 cut(s)	111, 165, 189
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	4 cut(s)	48, 74, 353, 480
MnlI	CCTC	2 cut(s)	508, 743
MroI	TCCGGA	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	2 cut(s)	441, 475
MslI	CAYNNNNRTG	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	535
MspI	CCGG	6 cut(s)	12, 147, 305, 433, 486, 508
MspR9I	CCNGG	1 cut(s)	509
Mva1269I	GAATGC	2 cut(s)	21, 233
MvnI	CGCG	1 cut(s)	741
MwoI	GCNNNNNNNGC	4 cut(s)	370, 379, 465, 541
NciI	CCSGG	1 cut(s)	509
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	132, 211
NlaIV	GGNNCC	1 cut(s)	416
NmuCI	GTSAC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	2 cut(s)	580, 592
PctI	GAATGC	2 cut(s)	21, 233
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	285
Pfl23II	CGTACG	1 cut(s)	601
PflFI	GACNNNGTC	2 cut(s)	135, 585
PflMI	CCANNNNNTGG	2 cut(s)	208, 269
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	2 cut(s)	381, 543
PmaCI	CACGTG	1 cut(s)	569
PmlI	CACGTG	1 cut(s)	569
Ppu21I	YACGTR	3 cut(s)	569, 601, 772
PshAI	GACNNNNGTC	2 cut(s)	65, 516
Psp1406I	AACGTT	1 cut(s)	438
PspCI	CACGTG	1 cut(s)	569
PspLI	CGTACG	1 cut(s)	601
PspN4I	GGNNCC	1 cut(s)	416
PspPI	GGNCC	2 cut(s)	211, 563
PstNI	CAGNNNCTG	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	88
PsyI	GACNNNGTC	2 cut(s)	135, 585
PvuII	CAGCTG	1 cut(s)	535
RsaI	GTAC	4 cut(s)	579, 603, 624, 774
RsaNI	GTAC	4 cut(s)	578, 602, 623, 773
RseI	CAYNNNNRTG	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	441, 475
SatI	GCNGC	2 cut(s)	380, 542
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	2 cut(s)	211, 563
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	3 cut(s)	113, 374, 638
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	127
Sse9I	AATT	4 cut(s)	48, 74, 353, 480
SsiI	CCGC	4 cut(s)	171, 364, 645, 741
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	67, 498, 723
TaiI	ACGT	5 cut(s)	441, 571, 586, 603, 774
TaqI	TCGA	4 cut(s)	42, 276, 288, 574
TasI	AATT	4 cut(s)	48, 74, 353, 480
TatI	WGTACW	1 cut(s)	622
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	441, 475
Tru9I	TTAA	2 cut(s)	441, 475
TscAI	CASTG	3 cut(s)	366, 476, 503
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	379, 541
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	4 cut(s)	111, 226, 312, 459
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	3 cut(s)	366, 476, 503
Tth111I	GACNNNGTC	2 cut(s)	135, 585
Van91I	CCANNNNNTGG	2 cut(s)	208, 269
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	2 cut(s)	48, 353
XbaI	TCTAGA	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	1 cut(s)	249
ZraI	GACGTC	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.