Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8416181.1

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 992

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8416181.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

tatatccacgaacacactgttcctgtctacattcatcgtgacatcaagtcagcaaacatcttaatagacaaaaacttccgcgcaaaggttgcagatttcggactaacaaaactgtctgaatatggaagtgcttcactgcagacacgtcttgtgggtacattcggatacatgcctccagagtatgctcaatatggtgatgtctcccccaaaatcgatgtttatgcttttggtgttgtactttttgaattaatatctgccaaggaagctgttgtgagaacaaatgaatatgttactgaatcgagaggacttgttgatttgtttgaaagtgttcttagccagcctgatccgagaaaagatcttggtaaacttgtcgaccccaggctcagcagcgatgattactcacctgactcggtctacaagatggctcaacttgccagagcttgcacacaagagaatcctcaactgaggccaagcatgagatcaattgtcgttgcgctaatgacactttcatcatcaactgaggaatgggatgttggttcgttttatgaaaatcacacagatctagtcaatctaatgtcagggaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

195

Amino Acids

21.91

Weight (kDa)

5.23

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	27, 372, 414
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	338
AfaI	GTAC	2 cut(s)	157, 237
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	245, 323
AhdI	GACNNNNNGTC	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	377
AjuI	GAANNNNNNNTTGG	2 cut(s)	516, 548
AluBI	AGCT	2 cut(s)	266, 440
AluI	AGCT	2 cut(s)	266, 440
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	467
ApeKI	GCWGC	1 cut(s)	387
AseI	ATTAAT	1 cut(s)	248
Asp700I	GAANNNNTTC	2 cut(s)	130, 327
AspLEI	GCGC	2 cut(s)	83, 496
AsuHPI	GGTGA	2 cut(s)	206, 393
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	1 cut(s)	415
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	158
BglII	AGATCT	2 cut(s)	355, 559
BisI	GCNGC	1 cut(s)	388
BlpI	GCTNAGC	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	379
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	159
Bpu1102I	GCTNAGC	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	258, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	379
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	258, 377
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	3 cut(s)	397, 455, 510
BseXI	GCAGC	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	469
BshVI	ATCGAT	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	343, 355, 479, 559
Bsp1720I	GCTNAGC	1 cut(s)	383
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	3 cut(s)	396, 456, 511
BspDI	ATCGAT	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	1 cut(s)	338
BssECI	CCNNGG	2 cut(s)	258, 377
BssMI	GATC	4 cut(s)	343, 355, 479, 559
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	19, 114
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	338, 442
BstDEI	CTNAG	4 cut(s)	332, 383, 464, 519
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	2 cut(s)	83, 496
BstKTI	GATC	4 cut(s)	346, 358, 482, 562
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	4 cut(s)	343, 355, 479, 559
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 263, 431
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	399
BstX2I	RGATCY	2 cut(s)	355, 559
BstYI	RGATCY	2 cut(s)	355, 559
Bsu15I	ATCGAT	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	469
BsuTUI	ATCGAT	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	405
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	535
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	15, 134
Cac8I	GCNNGC	2 cut(s)	338, 442
CfoI	GCGC	2 cut(s)	83, 496
ClaI	ATCGAT	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	156, 236
CviAII	CATG	2 cut(s)	169, 475
CviJI	RGCY	7 cut(s)	266, 336, 340, 382, 425, 440, 469
CviKI_1	RGCY	7 cut(s)	266, 336, 340, 382, 425, 440, 469
CviQI	GTAC	2 cut(s)	156, 236
DdeI	CTNAG	4 cut(s)	332, 383, 464, 519
DpnI	GATC	4 cut(s)	345, 357, 481, 561
DpnII	GATC	4 cut(s)	343, 355, 479, 559
DriI	GACNNNNNGTC	1 cut(s)	46
Eam1105I	GACNNNNNGTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	172, 478
FaiI	YATR	9 cut(s)	3, 123, 170, 183, 192, 222, 288, 476, 546
FatI	CATG	2 cut(s)	168, 474
FblI	GTMKAC	3 cut(s)	27, 372, 414
Fnu4HI	GCNGC	1 cut(s)	388
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	1 cut(s)	563
GlaI	GCGC	2 cut(s)	82, 495
GluI	GCNGC	1 cut(s)	388
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	469
HhaI	GCGC	2 cut(s)	83, 496
Hin1II	CATG	2 cut(s)	172, 478
Hin6I	GCGC	2 cut(s)	81, 494
HinP1I	GCGC	2 cut(s)	81, 494
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	3 cut(s)	296, 407, 454
HphI	GGTGA	2 cut(s)	206, 393
Hpy166II	GTNNAC	4 cut(s)	28, 365, 373, 415
Hpy188I	TCNGA	4 cut(s)	101, 118, 164, 348
Hpy188III	TCNNGA	3 cut(s)	38, 176, 300
Hpy8I	GTNNAC	4 cut(s)	28, 365, 373, 415
HpyCH4III	ACNGT	2 cut(s)	19, 114
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	3 cut(s)	92, 139, 444
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 263, 431
HpyF3I	CTNAG	4 cut(s)	332, 383, 464, 519
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	172, 478
HspAI	GCGC	2 cut(s)	81, 494
Kzo9I	GATC	4 cut(s)	343, 355, 479, 559
LpnPI	CCDG	9 cut(s)	36, 189, 350, 354, 364, 391, 417, 448, 564
Lsp1109I	GCAGC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	38, 289
MalI	GATC	4 cut(s)	345, 357, 481, 561
MboI	GATC	4 cut(s)	343, 355, 479, 559
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	2 cut(s)	355, 559
MluCI	AATT	2 cut(s)	245, 483
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	6 cut(s)	183, 296, 459, 468, 514, 576
MroXI	GAANNNNTTC	2 cut(s)	130, 327
MseI	TTAA	2 cut(s)	62, 248
MspR9I	CCNGG	1 cut(s)	379
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	379
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	89, 263, 431
NdeII	GATC	4 cut(s)	343, 355, 479, 559
NlaIII	CATG	2 cut(s)	172, 478
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	172
PdmI	GAANNNNTTC	2 cut(s)	130, 327
PfeI	GAWTC	2 cut(s)	296, 454
PflFI	GACNNNGTC	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	389
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PshBI	ATTAAT	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	355, 559
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	2 cut(s)	157, 237
RsaNI	GTAC	2 cut(s)	156, 236
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	62, 248
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	4 cut(s)	343, 355, 479, 559
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	379
SetI	ASST	6 cut(s)	90, 148, 268, 406, 442, 587
SfcI	CTRYAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	245, 483
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	19, 114
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	213, 299, 372
TaqII	GACCGA	1 cut(s)	400
TasI	AATT	2 cut(s)	245, 483
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	296, 454
Tru1I	TTAA	2 cut(s)	62, 248
Tru9I	TTAA	2 cut(s)	62, 248
TscAI	CASTG	2 cut(s)	22, 141
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	4 cut(s)	23, 297, 498, 561
TspRI	CASTG	2 cut(s)	22, 141
Tth111I	GACNNNGTC	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	248
XceI	RCATGY	1 cut(s)	172
XmiI	GTMKAC	3 cut(s)	27, 372, 414
XmnI	GAANNNNTTC	2 cut(s)	130, 327
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.