Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Forward (+)

21695536 .. 21699373

Gene Structure 3838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G213000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAAGAAAACTGCAATCACGCAAGCATCAAAAGAATTTCCTGCTGAATTAAATGTTTTAACTCGCGTAAATCATTCTAATCTGGTGCGCTTGATTGGTTATTGCGTTGAGGGCTCTCTTTTCCTAGTCTATGAATACATTGAGAATGGAAACTTAAGCCAACATCTGCGTGGTTCAGGGAGAGACCCGCTACCCTGGTCTAATAGATTGCAGATTGCCCTGGATTCAGCAAGAGGTCTTGAATACATTCATGAGCATACCGTTCCTGTTTATATCCACCGGGATACAAAATCAGCCAATATATTGATAGACAAGAATTTCCATGCCAAGGTTGCAGATTTTGGATTAGCTAAACTGATTGAAGTTGGAAGTACATCACTCCCCACACGTCTTGTGGGAAAATTTGGATACATGCCGCCAGAATATGCTCGATGTGGCGGAGCTTCTACGAAAGTAGATGTTTATGCTTTCGGAGTTGTCATTTATGAATCGATCTCTGCCAAGGAAGCTGTTGTAAGGGCAGATAGTTCTGGCTCTGAACCAAGAGGCCTTGTTTGTTTGTTCGATGAGGTCCTTAATCAACCTGATCCTAAAGACCTCTGGAAATTGGTTGACCCTGGTCTTGGAGACAACTATCCACTTGACTCAGTGCGCAAGATGGCTCAACTTGCCAAAGCATGTACGCATGAGAACAAAGAATTGCGTCCAAGTATGCAATCTATTGTGGTCGCCTTGATGACGCTCTCATCCTCAACTGAGGATTGGGATGTTGGATCCTTATATGAAAATCAAGCGCTCTCACCCTCAACTGAGGATTGGGATGTTGGATCCTTATATGAAAATCAAGCGCTCTCACCCTCAACTGCGGATTGGGATGTTGGATCCTTCTGTGAAAGAGAAAGTCAATCGTCAAGCGTCAATCTGATGTCGGGAAGTCAGAATCTACAAGTGCATTGTTGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

322

Amino Acids

35.38

Weight (kDa)

5.23

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	653
AccII	CGCG	1 cut(s)	66
AciI	CCGC	4 cut(s)	188, 416, 438, 866
AclWI	GGATC	7 cut(s)	581, 768, 781, 822, 835, 876, 889
AcsI	RAATTY	3 cut(s)	35, 316, 401
AfaI	GTAC	2 cut(s)	373, 682
AfeI	AGCGCT	2 cut(s)	795, 849
AfiI	CCNNNNNNNGG	2 cut(s)	328, 623
AflII	CTTAAG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	242, 362
AjiI	CACGTC	1 cut(s)	389
AjnI	CCWGG	3 cut(s)	194, 219, 616
AluBI	AGCT	3 cut(s)	350, 443, 509
AluI	AGCT	3 cut(s)	350, 443, 509
Alw26I	GTCTC	2 cut(s)	177, 621
AlwI	GGATC	7 cut(s)	581, 768, 781, 822, 835, 876, 889
Aor51HI	AGCGCT	2 cut(s)	795, 849
AoxI	GGCC	1 cut(s)	547
ApoI	RAATTY	3 cut(s)	35, 316, 401
Asp700I	GAANNNNTTC	1 cut(s)	246
AspLEI	GCGC	4 cut(s)	90, 654, 796, 850
AspS9I	GGNCC	1 cut(s)	571
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	792, 846
AvaII	GGWCC	1 cut(s)	571
BamHI	GGATCC	3 cut(s)	773, 827, 881
BanII	GRGCYC	1 cut(s)	116
BccI	CCATC	1 cut(s)	652
BciT130I	CCWGG	3 cut(s)	196, 221, 618
BciVI	GTATCC	2 cut(s)	277, 401
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	177, 621
BfaI	CTAG	1 cut(s)	125
BfoI	RGCGCY	2 cut(s)	797, 851
BfrI	CTTAAG	1 cut(s)	154
BfuI	GTATCC	2 cut(s)	277, 401
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	4 cut(s)	196, 221, 281, 618
Bme18I	GGWCC	1 cut(s)	571
BmgBI	CACGTC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	571
BmiI	GGNNCC	3 cut(s)	775, 829, 883
BmrFI	CCNGG	4 cut(s)	196, 221, 281, 618
BmsI	GCATC	1 cut(s)	35
BoxI	GACNNNNGTC	1 cut(s)	618
BpuMI	CCSGG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	491
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	5 cut(s)	194, 219, 327, 501, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 623
BseBI	CCWGG	3 cut(s)	196, 221, 618
BseCI	ATCGAT	1 cut(s)	491
BseDI	CCNNGG	5 cut(s)	194, 219, 327, 501, 616
BseGI	GGATG	4 cut(s)	746, 772, 826, 880
BseLI	CCNNNNNNNGG	2 cut(s)	328, 623
BseMII	CTCAG	3 cut(s)	660, 747, 801
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	549
BshVI	ATCGAT	1 cut(s)	491
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	328, 623
BsmAI	GTCTC	2 cut(s)	177, 621
BsnI	GGCC	1 cut(s)	549
Bso31I	GGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	5 cut(s)	492, 586, 773, 827, 881
BspACI	CCGC	4 cut(s)	188, 416, 438, 866
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	3 cut(s)	659, 748, 802
BspDI	ATCGAT	1 cut(s)	491
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	3 cut(s)	775, 829, 883
BspPI	GGATC	7 cut(s)	581, 768, 781, 822, 835, 876, 889
BspTI	CTTAAG	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	177
BssECI	CCNNGG	5 cut(s)	194, 219, 327, 501, 616
BssMI	GATC	5 cut(s)	492, 586, 773, 827, 881
BssT1I	CCWWGG	2 cut(s)	327, 501
Bst2UI	CCWGG	3 cut(s)	196, 221, 618
Bst4CI	ACNGT	1 cut(s)	262
BstAFI	CTTAAG	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	646, 756, 810
BstF5I	GGATG	4 cut(s)	746, 772, 826, 880
BstFNI	CGCG	1 cut(s)	66
BstH2I	RGCGCY	2 cut(s)	797, 851
BstHHI	GCGC	4 cut(s)	90, 654, 796, 850
BstKTI	GATC	5 cut(s)	495, 589, 776, 830, 884
BstMAI	GTCTC	2 cut(s)	177, 621
BstMBI	GATC	5 cut(s)	492, 586, 773, 827, 881
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 332, 506, 668
BstNI	CCWGG	3 cut(s)	196, 221, 618
BstNSI	RCATGY	2 cut(s)	415, 681
BstPAI	GACNNNNGTC	1 cut(s)	618
BstSCI	CCNGG	4 cut(s)	194, 219, 279, 616
BstUI	CGCG	1 cut(s)	66
BstX2I	RGATCY	3 cut(s)	773, 827, 881
BstYI	RGATCY	3 cut(s)	773, 827, 881
Bsu15I	ATCGAT	1 cut(s)	491
BsuI	GTATCC	2 cut(s)	277, 401
BsuRI	GGCC	1 cut(s)	549
BsuTUI	ATCGAT	1 cut(s)	491
BtrI	CACGTC	1 cut(s)	389
BtsCI	GGATG	4 cut(s)	746, 772, 826, 880
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	4 cut(s)	90, 654, 796, 850
Cfr13I	GGNCC	1 cut(s)	571
ClaI	ATCGAT	1 cut(s)	491
CseI	GACGC	3 cut(s)	692, 748, 904
Csp6I	GTAC	2 cut(s)	372, 681
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	5 cut(s)	251, 323, 412, 678, 686
CviJI	RGCY	9 cut(s)	114, 159, 296, 350, 443, 509, 534, 549, 662
CviKI_1	RGCY	9 cut(s)	114, 159, 296, 350, 443, 509, 534, 549, 662
CviQI	GTAC	2 cut(s)	372, 681
DdeI	CTNAG	3 cut(s)	646, 756, 810
DpnI	GATC	5 cut(s)	494, 588, 775, 829, 883
DpnII	GATC	5 cut(s)	492, 586, 773, 827, 881
EciI	GGCGGA	1 cut(s)	453
Eco130I	CCWWGG	2 cut(s)	327, 501
Eco147I	AGGCCT	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	571
Eco47III	AGCGCT	2 cut(s)	795, 849
EcoO109I	RGGNCCY	1 cut(s)	571
EcoRII	CCWGG	3 cut(s)	194, 219, 616
EcoT14I	CCWWGG	2 cut(s)	327, 501
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	327, 501
FaeI	CATG	5 cut(s)	254, 326, 415, 681, 689
FatI	CATG	5 cut(s)	250, 322, 411, 677, 685
FauI	CCCGC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	4 cut(s)	733, 779, 833, 887
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	1 cut(s)	125
FspI	TGCGCA	1 cut(s)	653
GlaI	GCGC	4 cut(s)	89, 653, 795, 849
GluI	GCNGC	1 cut(s)	416
HaeII	RGCGCY	2 cut(s)	797, 851
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	3 cut(s)	692, 748, 904
HhaI	GCGC	4 cut(s)	90, 654, 796, 850
Hin1II	CATG	5 cut(s)	254, 326, 415, 681, 689
Hin6I	GCGC	4 cut(s)	88, 652, 794, 848
HinP1I	GCGC	4 cut(s)	88, 652, 794, 848
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	4 cut(s)	224, 488, 644, 940
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	792, 846
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	4 cut(s)	473, 538, 924, 939
Hpy188III	TCNNGA	4 cut(s)	239, 251, 601, 930
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	1 cut(s)	895
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	5 cut(s)	14, 211, 335, 715, 952
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 332, 506, 668
HpyF3I	CTNAG	3 cut(s)	646, 756, 810
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	5 cut(s)	254, 326, 415, 681, 689
HspAI	GCGC	4 cut(s)	88, 652, 794, 848
Kzo9I	GATC	5 cut(s)	492, 586, 773, 827, 881
LmnI	GCTCC	1 cut(s)	440
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	388
MalI	GATC	5 cut(s)	494, 588, 775, 829, 883
MboI	GATC	5 cut(s)	492, 586, 773, 827, 881
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	3 cut(s)	773, 827, 881
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	6 cut(s)	35, 47, 316, 401, 605, 698
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	4 cut(s)	346, 751, 805, 859
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	4 cut(s)	50, 59, 155, 576
MslI	CAYNNNNRTG	2 cut(s)	168, 957
MspCI	CTTAAG	1 cut(s)	154
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	4 cut(s)	196, 221, 281, 618
MvaI	CCWGG	3 cut(s)	196, 221, 618
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	4 cut(s)	111, 332, 506, 668
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	5 cut(s)	492, 586, 773, 827, 881
NlaIII	CATG	5 cut(s)	254, 326, 415, 681, 689
NlaIV	GGNNCC	3 cut(s)	775, 829, 883
NsbI	TGCGCA	1 cut(s)	653
NspI	RCATGY	2 cut(s)	415, 681
PagI	TCATGA	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	224, 488, 940
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	638
PpuMI	RGGWCCY	1 cut(s)	571
PshAI	GACNNNNGTC	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	571
Psp6I	CCWGG	3 cut(s)	194, 219, 616
PspGI	CCWGG	3 cut(s)	194, 219, 616
PspN4I	GGNNCC	3 cut(s)	775, 829, 883
PspPI	GGNCC	1 cut(s)	571
PspPPI	RGGWCCY	1 cut(s)	571
PsuI	RGATCY	3 cut(s)	773, 827, 881
RsaI	GTAC	2 cut(s)	373, 682
RsaNI	GTAC	2 cut(s)	372, 681
RseI	CAYNNNNRTG	2 cut(s)	168, 957
SaqAI	TTAA	4 cut(s)	50, 59, 155, 576
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	5 cut(s)	492, 586, 773, 827, 881
Sau96I	GGNCC	1 cut(s)	571
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	4 cut(s)	196, 221, 281, 618
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	9 cut(s)	238, 333, 352, 391, 445, 511, 573, 586, 600
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	1 cut(s)	571
SmiMI	CAYNNNNRTG	2 cut(s)	168, 957
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	6 cut(s)	35, 47, 316, 401, 605, 698
SseBI	AGGCCT	1 cut(s)	549
SsiI	CCGC	4 cut(s)	188, 416, 438, 866
SspMI	CTAG	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	549
StyD4I	CCNGG	4 cut(s)	194, 219, 279, 616
StyI	CCWWGG	2 cut(s)	327, 501
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	3 cut(s)	430, 491, 564
TasI	AATT	6 cut(s)	35, 47, 316, 401, 605, 698
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	3 cut(s)	224, 488, 940
Tru1I	TTAA	4 cut(s)	50, 59, 155, 576
Tru9I	TTAA	4 cut(s)	50, 59, 155, 576
TscAI	CASTG	1 cut(s)	654
TspDTI	ATGAA	6 cut(s)	17, 147, 239, 501, 798, 852
TspRI	CASTG	1 cut(s)	654
Vha464I	CTTAAG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	571
XapI	RAATTY	3 cut(s)	35, 316, 401
XceI	RCATGY	2 cut(s)	415, 681
XcmI	CCANNNNNNNNNTGG	2 cut(s)	167, 391
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.