Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Forward (+)

78762063 .. 78763212

Gene Structure 1150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG558300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAACACCAGCGACGCCATCATCGCCAGTGTTAACAAATTGCCGAACAAGGACAGTGTTCAATCCGGGACGAGGGTCAATGTTCCGTTCAGCTGTGGCTGCATAAATGGTTCGTTTCTGGGCCACGTGTTCGAGTACGACCTCGTCAAAGGCGACACGTACGAAAAGGTTGCGAGTTTGTACTATGCCAACCTGACCACGGCGGATGCTATGGTGTGGTTCAATGAGTATTCTGAGATTGACATACCCGATAATGGAAAGCTGAATGTGGTGGTCAACTGTTCGTGTGGGAATAGCGCGGTTTCCGAGGACTATGGGTTGTTTATCACGTACCCACTTCTGCCCGGAGACAGTTTGGCTTCGATTGCTCAGGCGGAGAATCTGGATCCGAGTTTGCTGCAGGATTATAATCCGGGTGTCAACTTTAGCGGAGGGAGTGGTTACGTGTACATTCCGGGCAAAGGTATGAGCTTTTTTTTAGAGGCCAAAGTTTCATTTGACTATTTGAGTTGTTTGAGTTTTAAAATTTTGATGCCTGCATTTGAAGTATGTAATGAATCTGCAGATTTGGCAAAAATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

194

Amino Acids

21.01

Weight (kDa)

4.23

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM_RLK	PF23577	109 - 152	5.1e-19	LysM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AccII	CGCG	1 cut(s)	299
AciI	CCGC	4 cut(s)	203, 299, 374, 429
AclWI	GGATC	2 cut(s)	380, 393
AcsI	RAATTY	1 cut(s)	525
AcvI	CACGTG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	5 cut(s)	137, 161, 182, 332, 449
AfiI	CCNNNNNNNGG	4 cut(s)	72, 199, 254, 461
AflIII	ACRYGT	3 cut(s)	126, 156, 444
AgsI	TTSAA	3 cut(s)	62, 223, 545
AluBI	AGCT	3 cut(s)	93, 262, 471
AluI	AGCT	3 cut(s)	93, 262, 471
Alw26I	GTCTC	1 cut(s)	342
AlwI	GGATC	2 cut(s)	380, 393
AoxI	GGCC	2 cut(s)	121, 483
ApeKI	GCWGC	2 cut(s)	99, 397
ApoI	RAATTY	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	121
AsuC2I	CCSGG	4 cut(s)	67, 345, 414, 456
BamHI	GGATCC	1 cut(s)	385
BbrPI	CACGTG	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	86, 384
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	216
BcgI	CGANNNNNNTGC	4 cut(s)	152, 186, 379, 413
BcnI	CCSGG	4 cut(s)	67, 345, 414, 456
BcoDI	GTCTC	1 cut(s)	342
BfmI	CTRYAG	2 cut(s)	398, 561
BisI	GCNGC	2 cut(s)	100, 398
BlsI	GCNGC	2 cut(s)	101, 399
Bme1390I	CCNGG	4 cut(s)	67, 345, 414, 456
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	4 cut(s)	67, 345, 414, 456
BmsI	GCATC	2 cut(s)	196, 522
BoxI	GACNNNNGTC	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	369
BpuMI	CCSGG	4 cut(s)	67, 345, 414, 456
BsaAI	YACGTR	4 cut(s)	127, 159, 330, 445
BsaBI	GATNNNNATC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	198, 306
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 199, 254, 461
Bse1I	ACTGG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	198, 306
BseGI	GGATG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	4 cut(s)	72, 199, 254, 461
BseMII	CTCAG	2 cut(s)	225, 383
BseNI	ACTGG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	86, 384
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	123, 485
BsiSI	CCGG	4 cut(s)	66, 345, 413, 455
BsiWI	CGTACG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	4 cut(s)	72, 199, 254, 461
BsmAI	GTCTC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	123, 485
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	4 cut(s)	203, 299, 374, 429
BspANI	GGCC	2 cut(s)	123, 485
BspCNI	CTCAG	2 cut(s)	226, 382
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	387
BspMAI	CTGCAG	2 cut(s)	402, 565
BspPI	GGATC	2 cut(s)	380, 393
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	198, 306
BssMI	GATC	1 cut(s)	385
BssNI	GRCGYC	1 cut(s)	15
Bst4CI	ACNGT	3 cut(s)	56, 281, 353
BstACI	GRCGYC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	447
BstBAI	YACGTR	4 cut(s)	127, 159, 330, 445
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	234, 369
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	1 cut(s)	388
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 99, 365, 569
BstPAI	GACNNNNGTC	1 cut(s)	74
BstSCI	CCNGG	4 cut(s)	65, 343, 412, 454
BstSFI	CTRYAG	2 cut(s)	398, 561
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	86, 384
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	123, 485
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	34, 61
Cac8I	GCNNGC	1 cut(s)	537
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	121
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	5 cut(s)	136, 160, 181, 331, 448
CviJI	RGCY	7 cut(s)	93, 99, 123, 262, 359, 471, 485
CviKI_1	RGCY	7 cut(s)	93, 99, 123, 262, 359, 471, 485
CviQI	GTAC	5 cut(s)	136, 160, 181, 331, 448
DdeI	CTNAG	2 cut(s)	234, 369
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
DraI	TTTAAA	1 cut(s)	523
EciI	GGCGGA	2 cut(s)	218, 389
Eco72I	CACGTG	1 cut(s)	127
FaiI	YATR	8 cut(s)	104, 186, 212, 245, 315, 408, 467, 550
FaqI	GGGAC	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	100, 398
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	2 cut(s)	100, 398
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	2 cut(s)	100, 398
HaeIII	GGCC	2 cut(s)	123, 485
HapII	CCGG	4 cut(s)	66, 345, 413, 455
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	3 cut(s)	34, 277, 421
HindII	GTYRAC	3 cut(s)	34, 277, 421
HinfI	GANTC	2 cut(s)	379, 557
HpaI	GTTAAC	1 cut(s)	34
HpaII	CCGG	4 cut(s)	66, 345, 413, 455
Hpy166II	GTNNAC	4 cut(s)	34, 277, 421, 448
Hpy188I	TCNGA	3 cut(s)	235, 307, 390
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	4 cut(s)	34, 277, 421, 448
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4III	ACNGT	3 cut(s)	56, 281, 353
HpyCH4IV	ACGT	4 cut(s)	126, 158, 329, 444
HpyCH4V	TGCA	4 cut(s)	102, 400, 539, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 99, 365, 569
HpyF3I	CTNAG	2 cut(s)	234, 369
HpySE526I	ACGT	4 cut(s)	126, 158, 329, 444
Hsp92I	GRCGYC	1 cut(s)	15
HspAI	GCGC	1 cut(s)	297
KspAI	GTTAAC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	385
Lsp1109I	GCAGC	2 cut(s)	86, 384
LweI	GCATC	2 cut(s)	196, 522
MaeII	ACGT	4 cut(s)	126, 158, 329, 444
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	3 cut(s)	38, 525, 580
MnlI	CCTC	5 cut(s)	66, 152, 301, 425, 475
MseI	TTAA	2 cut(s)	33, 522
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	4 cut(s)	66, 345, 413, 455
MspR9I	CCNGG	4 cut(s)	67, 345, 414, 456
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	4 cut(s)	23, 99, 365, 569
NciI	CCSGG	4 cut(s)	67, 345, 414, 456
NdeII	GATC	1 cut(s)	385
NlaIV	GGNNCC	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	379, 557
Pfl23II	CGTACG	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	101, 399
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
Ppu21I	YACGTR	4 cut(s)	127, 159, 330, 445
PshAI	GACNNNNGTC	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	408
PspCI	CACGTG	1 cut(s)	127
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	121
PstI	CTGCAG	2 cut(s)	402, 565
PsuI	RGATCY	1 cut(s)	385
PsyI	GACNNNGTC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	5 cut(s)	137, 161, 182, 332, 449
RsaNI	GTAC	5 cut(s)	136, 160, 181, 331, 448
SaqAI	TTAA	2 cut(s)	33, 522
SatI	GCNGC	2 cut(s)	100, 398
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	1 cut(s)	121
ScrFI	CCNGG	4 cut(s)	67, 345, 414, 456
SfaNI	GCATC	2 cut(s)	196, 522
SfcI	CTRYAG	2 cut(s)	398, 561
Sse9I	AATT	3 cut(s)	38, 525, 580
SsiI	CCGC	4 cut(s)	203, 299, 374, 429
StyD4I	CCNGG	4 cut(s)	65, 343, 412, 454
TaaI	ACNGT	3 cut(s)	56, 281, 353
TaiI	ACGT	4 cut(s)	129, 161, 332, 447
TaqI	TCGA	2 cut(s)	132, 362
TasI	AATT	3 cut(s)	38, 525, 580
TatI	WGTACW	2 cut(s)	180, 447
TfiI	GAWTC	2 cut(s)	379, 557
Tru1I	TTAA	2 cut(s)	33, 522
Tru9I	TTAA	2 cut(s)	33, 522
TscAI	CASTG	2 cut(s)	34, 61
TseI	GCWGC	2 cut(s)	99, 397
TspDTI	ATGAA	3 cut(s)	17, 483, 570
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	34, 61
Tth111I	GACNNNGTC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.