Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Reverse (-)

65206991 .. 65209053

Gene Structure 2063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G041530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAAGCAGCAATCAAAAGGATGGATATGCAAGCAACAAAAGAATTCCTTGCTGAACTGAAGGTTCTAACACATGTTCATCACTTAAATCTGGTGCGCTTGATAGGGTATTGTGTCGAGGACTCCTTGTTCTTAGTGTATGAGTACATTGAAAATGGTAACTTAAGCCCATTGCCATGGCAAACCAGGATGCAAATAGCCTTAGATTCTGCAAGAGGACTAGAATATATCCACGAACACACTGTTCCTGTCTACATTCATCGTGACATCAAGTCAGCAAACATGAATATAGACAAAAACTTCCGCGCAAAGGTGAACAATGATCAGGAAATCTTTCTCTTCTCTCTCATTTTCCAGAAGCAAAGCTTTAGTGTCTTTCCTCATTCAAGGCTTTTAGACTCTTTCAACTTGACGTACCAGAAAGATATGATGGTTTCACAAGAAGAGCTTACATCAGGACGCATCATTGAAAAGGAAAAGAAAAAGGGTATGTTTAGTGCTGTTCTTAAAGATATTGTGGGAAGTAAAGGGAAGAATGTCCTTGAGATGGAAAATGAAGATACTAAAGAAAGTATTGAAGAACTTTCAAAAATATTTTCGACTGCTAATTTCCAATTTGATGCTGAGAACACAGACAACCAGGCCATGGGTGAAGATGATGAAATGGGTGAGAACAATTGGTGGGAGTTCGCTTGGAAGCAAATTAATCAAGTTTTAATGTATAATTTCGAAATGTGGCCAAGTACAACATTGTATAACATAGTTTCAATTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

258

Amino Acids

30.22

Weight (kDa)

5.02

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 105	1.5e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 104	8.5e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	646
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	1 cut(s)	306
AciI	CCGC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	737
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	3 cut(s)	146, 416, 745
AfiI	CCNNNNNNNGG	3 cut(s)	310, 547, 646
AflII	CTTAAG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	7 cut(s)	152, 387, 406, 470, 578, 588, 768
AhdI	GACNNNNNGTC	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	185, 639
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	2 cut(s)	366, 448
AluI	AGCT	2 cut(s)	366, 448
AoxI	GGCC	2 cut(s)	642, 737
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	44
AseI	ATTAAT	1 cut(s)	705
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	2 cut(s)	99, 308
AsuHPI	GGTGA	3 cut(s)	325, 662, 680
AsuII	TTCGAA	1 cut(s)	729
BalI	TGGCCA	1 cut(s)	739
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	3 cut(s)	16, 424, 541
BciT130I	CCWGG	2 cut(s)	187, 641
BclI	TGATCA	1 cut(s)	322
BfaI	CTAG	1 cut(s)	221
BfrI	CTTAAG	1 cut(s)	163
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	187, 641
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	187, 641
BmsI	GCATC	3 cut(s)	180, 471, 610
Bpu14I	TTCGAA	1 cut(s)	729
BpuEI	CTTGAG	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	176, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 547, 646
Bse3DI	GCAATG	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	187, 641
BseDI	CCNNGG	2 cut(s)	176, 645
BseGI	GGATG	2 cut(s)	27, 195
BseLI	CCNNNNNNNGG	3 cut(s)	310, 547, 646
BseMI	GCAATG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	615
BseXI	GCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	644, 739
BslI	CCNNNNNNNGG	3 cut(s)	310, 547, 646
BsnI	GGCC	2 cut(s)	644, 739
Bsp119I	TTCGAA	1 cut(s)	729
Bsp143I	GATC	1 cut(s)	322
Bsp19I	CCATGG	2 cut(s)	176, 645
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	2 cut(s)	644, 739
BspCNI	CTCAG	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	729
BspTI	CTTAAG	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	176, 645
BssMI	GATC	1 cut(s)	322
BssT1I	CCWWGG	2 cut(s)	176, 645
Bst2UI	CCWGG	2 cut(s)	187, 641
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	344, 438
BstAFI	CTTAAG	1 cut(s)	163
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	133, 202, 624
BstDSI	CCRYGG	2 cut(s)	176, 645
BstF5I	GGATG	2 cut(s)	27, 195
BstFNI	CGCG	1 cut(s)	306
BstHHI	GCGC	2 cut(s)	99, 308
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstNI	CCWGG	2 cut(s)	187, 641
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	185, 639
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	644, 739
BtgI	CCRYGG	2 cut(s)	176, 645
BtsCI	GGATG	2 cut(s)	27, 195
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	2 cut(s)	99, 308
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	3 cut(s)	145, 415, 744
CviAII	CATG	4 cut(s)	74, 177, 283, 646
CviJI	RGCY	7 cut(s)	168, 200, 366, 391, 448, 644, 739
CviKI_1	RGCY	7 cut(s)	168, 200, 366, 391, 448, 644, 739
CviQI	GTAC	3 cut(s)	145, 415, 744
DdeI	CTNAG	3 cut(s)	133, 202, 624
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DriI	GACNNNNNGTC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	737
Eam1104I	CTCTTC	2 cut(s)	344, 438
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EarI	CTCTTC	2 cut(s)	344, 438
Eco130I	CCWWGG	2 cut(s)	176, 645
Eco57I	CTGAAG	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	185, 639
EcoT14I	CCWWGG	2 cut(s)	176, 645
ErhI	CCWWGG	2 cut(s)	176, 645
FaeI	CATG	4 cut(s)	77, 180, 286, 649
FalI	AAGNNNNNCTT	6 cut(s)	33, 65, 350, 382, 432, 464
FatI	CATG	4 cut(s)	73, 176, 282, 645
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	2 cut(s)	34, 202
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	2 cut(s)	98, 307
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	644, 739
HgaI	GACGC	1 cut(s)	468
HhaI	GCGC	2 cut(s)	99, 308
Hin1II	CATG	4 cut(s)	77, 180, 286, 649
Hin6I	GCGC	2 cut(s)	97, 306
HinP1I	GCGC	2 cut(s)	97, 306
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	3 cut(s)	122, 206, 398
HphI	GGTGA	3 cut(s)	325, 662, 680
Hpy166II	GTNNAC	2 cut(s)	253, 316
Hpy188III	TCNNGA	4 cut(s)	263, 326, 355, 456
Hpy8I	GTNNAC	2 cut(s)	253, 316
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	3 cut(s)	31, 193, 212
HpyF3I	CTNAG	3 cut(s)	133, 202, 624
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	4 cut(s)	77, 180, 286, 649
HspAI	GCGC	2 cut(s)	97, 306
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	322
LguI	GCTCTTC	1 cut(s)	438
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	3 cut(s)	180, 471, 610
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	2 cut(s)	158, 263
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	6 cut(s)	331, 455, 544, 569, 590, 665
MfeI	CAATTG	1 cut(s)	676
MlsI	TGGCCA	1 cut(s)	739
MluCI	AATT	7 cut(s)	44, 607, 614, 676, 702, 724, 768
MluNI	TGGCCA	1 cut(s)	739
MlyI	GAGTC	2 cut(s)	116, 392
MnlI	CCTC	3 cut(s)	112, 209, 390
Mox20I	TGGCCA	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	739
MseI	TTAA	5 cut(s)	86, 164, 507, 705, 716
MslI	CAYNNNNRTG	1 cut(s)	175
Msp20I	TGGCCA	1 cut(s)	739
MspCI	CTTAAG	1 cut(s)	163
MspR9I	CCNGG	2 cut(s)	187, 641
MunI	CAATTG	1 cut(s)	676
MvaI	CCWGG	2 cut(s)	187, 641
MvnI	CGCG	1 cut(s)	306
NcoI	CCATGG	2 cut(s)	176, 645
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	4 cut(s)	77, 180, 286, 649
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	729
PciI	ACATGT	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	206
PflMI	CCANNNNNTGG	1 cut(s)	646
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	2 cut(s)	116, 392
PpsI	GAGTC	2 cut(s)	116, 392
PscI	ACATGT	1 cut(s)	73
PshBI	ATTAAT	1 cut(s)	705
Psp6I	CCWGG	2 cut(s)	185, 639
PspGI	CCWGG	2 cut(s)	185, 639
RsaI	GTAC	3 cut(s)	146, 416, 745
RsaNI	GTAC	3 cut(s)	145, 415, 744
RseI	CAYNNNNRTG	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	5 cut(s)	86, 164, 507, 705, 716
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	1 cut(s)	322
SchI	GAGTC	2 cut(s)	116, 392
ScrFI	CCNGG	2 cut(s)	187, 641
SetI	ASST	5 cut(s)	66, 315, 368, 416, 450
SfaNI	GCATC	3 cut(s)	180, 471, 610
SfuI	TTCGAA	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	163, 542
SmoI	CTYRAG	2 cut(s)	163, 542
Sse9I	AATT	7 cut(s)	44, 607, 614, 676, 702, 724, 768
SsiI	CCGC	1 cut(s)	304
SspI	AATATT	1 cut(s)	594
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	185, 639
StyI	CCWWGG	2 cut(s)	176, 645
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	3 cut(s)	117, 599, 729
TasI	AATT	7 cut(s)	44, 607, 614, 676, 702, 724, 768
TatI	WGTACW	2 cut(s)	144, 743
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	5 cut(s)	86, 164, 507, 705, 716
Tru9I	TTAA	5 cut(s)	86, 164, 507, 705, 716
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	5 cut(s)	68, 248, 299, 570, 675
TspRI	CASTG	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	646
Vha464I	CTTAAG	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.