Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Reverse (-)

56155649 .. 56156975

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0395400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGCAAGGACGCCAAGGCCGGAGGAAAAGGCAAGGGAAAAGCCGCAGCCGGCGCCGGCGGCGACGAGGGCGGCGGCTCTAAGGGAAAAGGAAAGTCCGGCAAGGGCGGAGCTTCCGATGGGCTCGGCACCTGCACGTATGTGAAGGCAAGGCACATACTTTGTGAGAAGCAGGGCAAGATCAACGAAGCCTACAAGAAGTTGCAGGACGGCTGGCTCGGAAACGGCGATAAGGTCCCTCCGGCGGAGTTCGCTAAGTTGGCCGCCGAGTACTCCGAGTGTCCTTCAGGGAAGAAAGGCGGCGACCTCGGGTGGTTCCCTCGCGGGAAGATGGCCGGCCCTTTTCAAGAGGTGGCCTTCAGCACTCCGATTGGGGCTACCAGCGGTGCTTTCAAGTCCACGAAGGGCATGTACTGTTGCAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005227 GO:0005261 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008324 GO:0009628 GO:0009987 GO:0010959 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016043 GO:0022607 GO:0022803 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0032879 GO:0033554 GO:0034220 GO:0043269 GO:0043933 GO:0044085 GO:0044464 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051259 GO:0051262 GO:0051716 GO:0051924 GO:0055085 GO:0065003 GO:0065007 GO:0071214 GO:0071470 GO:0071474 GO:0071840 GO:0071944 GO:0090279 GO:0098655 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

142

Amino Acids

14.36

Weight (kDa)

9.5

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	47 - 141	7.6e-15	PPIC-type PPIASE domain
Rotamase	PF00639	79 - 141	3.7e-13	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccB1I	GGYRCC	2 cut(s)	53, 128
AccII	CGCG	1 cut(s)	324
AcoI	YGGCCR	2 cut(s)	261, 333
AcuI	CTGAAG	2 cut(s)	270, 343
AcyI	GRCGYC	2 cut(s)	12, 54
AfaI	GTAC	2 cut(s)	272, 413
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	347, 394
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	2 cut(s)	113, 424
AluI	AGCT	2 cut(s)	113, 424
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	5 cut(s)	18, 261, 333, 337, 354
ApeKI	GCWGC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	235, 338
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	235
BanI	GGYRCC	2 cut(s)	53, 128
BanII	GRGCYC	1 cut(s)	126
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	2 cut(s)	113, 325
BceAI	ACGGC	2 cut(s)	226, 241
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	7 cut(s)	45, 48, 61, 73, 76, 264, 301
BlsI	GCNGC	7 cut(s)	46, 49, 62, 74, 77, 265, 302
BmcAI	AGTACT	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	235, 338
BmiI	GGNNCC	4 cut(s)	55, 130, 237, 317
BsaAI	YACGTR	1 cut(s)	138
BsaHI	GRCGYC	2 cut(s)	12, 54
BsaJI	CCNNGG	2 cut(s)	15, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	3 cut(s)	50, 56, 335
BseDI	CCNNGG	2 cut(s)	15, 307
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BshNI	GGYRCC	2 cut(s)	53, 128
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	6 cut(s)	21, 51, 57, 99, 242, 336
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	180
BspANI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	4 cut(s)	55, 130, 237, 317
BspMI	ACCTGC	1 cut(s)	140
BspT107I	GGYRCC	2 cut(s)	53, 128
BsrFI	RCCGGY	3 cut(s)	50, 56, 335
BssAI	RCCGGY	3 cut(s)	50, 56, 335
BssECI	CCNNGG	2 cut(s)	15, 307
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	2 cut(s)	12, 54
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	416
BstACI	GRCGYC	2 cut(s)	12, 54
BstBAI	YACGTR	1 cut(s)	138
BstC8I	GCNNGC	5 cut(s)	52, 58, 215, 337, 422
BstDEI	CTNAG	2 cut(s)	81, 255
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 60, 69, 251, 260
BstNSI	RCATGY	1 cut(s)	412
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	59
BsuRI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	5 cut(s)	52, 58, 215, 337, 422
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	3 cut(s)	50, 56, 335
Cfr13I	GGNCC	2 cut(s)	235, 338
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	271, 412
CviAII	CATG	1 cut(s)	409
CviQI	GTAC	2 cut(s)	271, 412
DdeI	CTNAG	2 cut(s)	81, 255
DinI	GGCGCC	1 cut(s)	55
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	2 cut(s)	261, 333
EciI	GGCGGA	2 cut(s)	123, 260
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	270, 343
Eco88I	CYCGRG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	412
FaiI	YATR	3 cut(s)	141, 158, 410
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	1 cut(s)	408
FauI	CCCGC	1 cut(s)	317
Fnu4HI	GCNGC	7 cut(s)	45, 48, 61, 73, 76, 264, 301
FriOI	GRGCYC	1 cut(s)	126
FseI	GGCCGGCC	1 cut(s)	339
Fsp4HI	GCNGC	7 cut(s)	45, 48, 61, 73, 76, 264, 301
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	7 cut(s)	45, 48, 61, 73, 76, 264, 301
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	5 cut(s)	20, 263, 335, 339, 356
HapII	CCGG	6 cut(s)	21, 51, 57, 99, 242, 336
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	2 cut(s)	12, 54
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HpaII	CCGG	6 cut(s)	21, 51, 57, 99, 242, 336
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	4 cut(s)	118, 221, 277, 369
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	4 cut(s)	139, 294, 367, 397
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	135, 205, 420
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 60, 69, 251, 260
HpyF3I	CTNAG	2 cut(s)	81, 255
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	2 cut(s)	12, 54
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	1 cut(s)	54
KasI	GGCGCC	1 cut(s)	53
KroI	GCCGGC	3 cut(s)	50, 56, 335
KroNI	GCCGGC	3 cut(s)	52, 58, 337
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	1 cut(s)	59
MaeII	ACGT	1 cut(s)	137
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	304, 340
MhlI	GDGCHC	1 cut(s)	126
Mly113I	GGCGCC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	17, 61, 249, 317, 330, 343
MreI	CGCCGGCG	1 cut(s)	56
MroNI	GCCGGC	3 cut(s)	50, 56, 335
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	384
MspI	CCGG	6 cut(s)	21, 51, 57, 99, 242, 336
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	5 cut(s)	53, 60, 69, 251, 260
NaeI	GCCGGC	3 cut(s)	52, 58, 337
NarI	GGCGCC	1 cut(s)	54
NdeII	GATC	1 cut(s)	180
NgoMIV	GCCGGC	3 cut(s)	50, 56, 335
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	4 cut(s)	55, 130, 237, 317
NmeAIII	GCCGAG	2 cut(s)	105, 292
NspI	RCATGY	1 cut(s)	412
OliI	CACNNNNGTG	1 cut(s)	140
PaqCI	CACCTGC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	3 cut(s)	52, 58, 337
PkrI	GCNGC	7 cut(s)	46, 49, 62, 74, 77, 265, 302
PluTI	GGCGCC	1 cut(s)	57
Ppu21I	YACGTR	1 cut(s)	138
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
PspN4I	GGNNCC	4 cut(s)	55, 130, 237, 317
PspPI	GGNCC	2 cut(s)	235, 338
PspPPI	RGGWCCY	1 cut(s)	235
RigI	GGCCGGCC	1 cut(s)	339
RsaI	GTAC	2 cut(s)	272, 413
RsaNI	GTAC	2 cut(s)	271, 412
RseI	CAYNNNNRTG	1 cut(s)	140
SatI	GCNGC	7 cut(s)	45, 48, 61, 73, 76, 264, 301
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	235, 338
ScaI	AGTACT	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	7 cut(s)	115, 134, 140, 237, 309, 354, 426
SfoI	GGCGCC	1 cut(s)	55
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	140
SspDI	GGCGCC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	1 cut(s)	140
TatI	WGTACW	2 cut(s)	270, 411
TauI	GCSGC	6 cut(s)	47, 63, 75, 78, 266, 303
TseI	GCWGC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	235
XceI	RCATGY	1 cut(s)	412
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.