Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Forward (+)

75781425 .. 75784593

Gene Structure 3169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG548800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTTCCTCGGTCTAGCCCTTGGAATTATCCCAGATAAATCTACTGAAACCAACAGTGCTTCTAGAGGCCCAACAGGCATTACCGTGGACAAATCAGTGGAGTTCTCTTTTGAAGAACTTTCCAGGGCTACTGATGACTTCAGTCTGGCTAATAAGATTGGACAAGGTGGTTTTGGGGCTGTTTACTATGCCGAGCTGAGAGGCGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCCGAATTAAACGTTTTGACTCGTGTACATCACTTGAATCTGGTGCGCTTGATTGGTTATTGTGTTGAGGGATCCCTTTTTCTCGTATATGAATACATTGAAAATGGCAATTTAAGCCAACATCTGCGCGGTTCAGGGAGGGACCCAATATCATGGTCTAATAGAGTGCAGATTGCCCTGGATTCAGCAAGAGGTCTTGAATACATTCATGAGCATACTGTTCCTGTTTATATCCACCGTGACATAAAGTCAGCCAATATATTAATAGACAAGAACTACCATGCAAAGGTTGCAGATTTTGGATTGACTAAACTGACTGAAGTTGGAAGTTCATCACTCCCCACGCGTCTTGTGGGGACATTTGGATACATGCCACCAGAATATGCTCAGTATGGCGAAGTTTCTCCCAAAGTAGATGTATATGCCTTTGGAGTCGTCCTTTATGAACTAATCTCTGCCAAGGAAGCAGTTGTGAGGGCAAATGCTTCTGGAGCAGAATCAAGGGGCCTTGTTGGTTTGTTCGAGGAAGTCCTTAATCAGCCCGATCCAAGAGAAGAGCTCCAAAAAGTGGTTGACCCTAGGCTTGGAGACAACTATCCACTTGAATCAGTCCGCAAGATGGCCCAACTTGCCAAAGCATGCGTGCATGAGAATAAAGACTTGCGACCAAGTATGCGATCTATTGTTGTTGCGTTAATGACACTTTCTTCATCAACTGAGGATTGGGATGTCGGATCCTTCTACGAAAATCAATCTCTTGTCAATCTAATGTCAGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

345

Amino Acids

38.15

Weight (kDa)

5.58

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	49 - 316	1.9e-47	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	49 - 314	2.4e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	823
AccII	CGCG	2 cut(s)	384, 601
AciI	CCGC	2 cut(s)	384, 868
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	5 cut(s)	321, 334, 794, 984, 997
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	2 cut(s)	124, 594
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	4 cut(s)	541, 823, 839, 874
AflIII	ACRYGT	1 cut(s)	599
AgsI	TTSAA	5 cut(s)	113, 292, 356, 455, 860
AhdI	GACNNNNNGTC	1 cut(s)	502
AjnI	CCWGG	2 cut(s)	122, 432
AluBI	AGCT	3 cut(s)	196, 212, 814
AluI	AGCT	3 cut(s)	196, 212, 814
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	1 cut(s)	837
AlwI	GGATC	5 cut(s)	321, 334, 794, 984, 997
AoxI	GGCC	3 cut(s)	67, 760, 876
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	248
AseI	ATTAAT	1 cut(s)	518
Asp700I	GAANNNNTTC	1 cut(s)	459
AspA2I	CCTAGG	1 cut(s)	833
AspLEI	GCGC	2 cut(s)	303, 384
AspS9I	GGNCC	4 cut(s)	68, 397, 760, 877
AvaII	GGWCC	1 cut(s)	397
AvrII	CCTAGG	1 cut(s)	833
BamHI	GGATCC	2 cut(s)	326, 989
BanII	GRGCYC	1 cut(s)	816
BauI	CACGAG	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	816
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	2 cut(s)	220, 868
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	2 cut(s)	124, 434
BciVI	GTATCC	1 cut(s)	614
BcoDI	GTCTC	1 cut(s)	837
BfaI	CTAG	3 cut(s)	14, 63, 834
BfuI	GTATCC	1 cut(s)	614
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	1 cut(s)	213
BlnI	CCTAGG	1 cut(s)	833
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	2 cut(s)	124, 434
Bme18I	GGWCC	1 cut(s)	397
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmgT120I	GGNCC	4 cut(s)	68, 397, 760, 877
BmiI	GGNNCC	5 cut(s)	328, 398, 399, 761, 991
BmrFI	CCNGG	2 cut(s)	124, 434
BmsI	GCATC	1 cut(s)	248
BoxI	GACNNNNGTC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	798, 830
BpmI	CTGGAG	1 cut(s)	765
BsaJI	CCNNGG	7 cut(s)	7, 19, 84, 123, 432, 714, 833
Bsc4I	CCNNNNNNNGG	4 cut(s)	541, 823, 839, 874
BseBI	CCWGG	2 cut(s)	124, 434
BseDI	CCNNGG	7 cut(s)	7, 19, 84, 123, 432, 714, 833
BseGI	GGATG	1 cut(s)	988
BseLI	CCNNNNNNNGG	4 cut(s)	541, 823, 839, 874
BseMII	CTCAG	3 cut(s)	188, 656, 963
BseXI	GCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	443
Bsh1236I	CGCG	2 cut(s)	384, 601
BshFI	GGCC	3 cut(s)	69, 762, 878
BsiHKAI	GWGCWC	1 cut(s)	816
BslFI	GGGAC	2 cut(s)	410, 625
BslI	CCNNNNNNNGG	4 cut(s)	541, 823, 839, 874
BsmAI	GTCTC	1 cut(s)	837
BsmFI	GGGAC	2 cut(s)	410, 625
BsnI	GGCC	3 cut(s)	69, 762, 878
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	326, 799, 932, 989
BspACI	CCGC	2 cut(s)	384, 868
BspANI	GGCC	3 cut(s)	69, 762, 878
BspCNI	CTCAG	3 cut(s)	189, 655, 964
BspFNI	CGCG	2 cut(s)	384, 601
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	5 cut(s)	328, 398, 399, 761, 991
BspPI	GGATC	5 cut(s)	321, 334, 794, 984, 997
BspQI	GCTCTTC	1 cut(s)	804
BsrGI	TGTACA	1 cut(s)	280
BssECI	CCNNGG	7 cut(s)	7, 19, 84, 123, 432, 714, 833
BssMI	GATC	4 cut(s)	326, 799, 932, 989
BssSI	CACGAG	1 cut(s)	276
BssT1I	CCWWGG	3 cut(s)	19, 714, 833
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	124, 434
Bst4CI	ACNGT	4 cut(s)	56, 85, 475, 494
Bst6I	CTCTTC	1 cut(s)	804
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	237, 895, 899
BstDEI	CTNAG	3 cut(s)	197, 642, 972
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	988
BstFNI	CGCG	2 cut(s)	384, 601
BstHHI	GCGC	2 cut(s)	303, 384
BstKTI	GATC	4 cut(s)	329, 802, 935, 992
BstMAI	GTCTC	1 cut(s)	837
BstMBI	GATC	4 cut(s)	326, 799, 932, 989
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 369, 545, 719, 746, 884
BstNI	CCWGG	2 cut(s)	124, 434
BstNSI	RCATGY	2 cut(s)	628, 897
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	122, 432
BstUI	CGCG	2 cut(s)	384, 601
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	326, 989
BstXI	CCANNNNNNTGG	1 cut(s)	408
BstYI	RGATCY	2 cut(s)	326, 989
BsuI	GTATCC	1 cut(s)	614
BsuRI	GGCC	3 cut(s)	69, 762, 878
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	988
BtsIMutI	CAGTG	2 cut(s)	61, 102
Cac8I	GCNNGC	3 cut(s)	237, 895, 899
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	2 cut(s)	303, 384
Cfr13I	GGNCC	4 cut(s)	68, 397, 760, 877
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	1 cut(s)	281
CspCI	CAANNNNNGTGG	2 cut(s)	586, 621
CviAII	CATG	6 cut(s)	408, 464, 536, 625, 894, 902
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	3 cut(s)	197, 642, 972
DpnI	GATC	4 cut(s)	328, 801, 934, 991
DpnII	GATC	4 cut(s)	326, 799, 932, 989
DriI	GACNNNNNGTC	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	804
Eam1105I	GACNNNNNGTC	1 cut(s)	502
EarI	CTCTTC	1 cut(s)	804
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	3 cut(s)	19, 714, 833
Eco24I	GRGCYC	1 cut(s)	816
Eco47I	GGWCC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	2 cut(s)	124, 594
EcoICRI	GAGCTC	1 cut(s)	814
EcoO109I	RGGNCCY	2 cut(s)	397, 760
EcoRII	CCWGG	2 cut(s)	122, 432
EcoT14I	CCWWGG	3 cut(s)	19, 714, 833
EcoT38I	GRGCYC	1 cut(s)	816
ErhI	CCWWGG	3 cut(s)	19, 714, 833
FaeI	CATG	6 cut(s)	411, 467, 539, 628, 897, 905
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	2 cut(s)	410, 625
FatI	CATG	6 cut(s)	407, 463, 535, 624, 893, 901
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	995
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	3 cut(s)	14, 63, 834
GlaI	GCGC	2 cut(s)	302, 383
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	3 cut(s)	69, 762, 878
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	2 cut(s)	303, 384
Hin1II	CATG	6 cut(s)	411, 467, 539, 628, 897, 905
Hin6I	GCGC	2 cut(s)	301, 382
HinP1I	GCGC	2 cut(s)	301, 382
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HinfI	GANTC	6 cut(s)	274, 292, 437, 687, 752, 860
Hpy166II	GTNNAC	4 cut(s)	88, 184, 281, 829
Hpy188I	TCNGA	1 cut(s)	989
Hpy188III	TCNNGA	6 cut(s)	63, 220, 452, 464, 744, 1029
Hpy8I	GTNNAC	4 cut(s)	88, 184, 281, 829
HpyAV	CCTTC	2 cut(s)	1003, 1026
HpyCH4III	ACNGT	4 cut(s)	56, 85, 475, 494
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	6 cut(s)	215, 235, 424, 539, 548, 901
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 369, 545, 719, 746, 884
HpyF3I	CTNAG	3 cut(s)	197, 642, 972
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	6 cut(s)	411, 467, 539, 628, 897, 905
HspAI	GCGC	2 cut(s)	301, 382
KflI	GGGWCCC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	326, 799, 932, 989
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	2 cut(s)	746, 819
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	3 cut(s)	14, 63, 834
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	4 cut(s)	328, 801, 934, 991
MboI	GATC	4 cut(s)	326, 799, 932, 989
MboII	GAAGA	4 cut(s)	125, 235, 821, 954
MflI	RGATCY	2 cut(s)	326, 989
MhlI	GDGCHC	1 cut(s)	816
MluCI	AATT	4 cut(s)	24, 248, 260, 364
MluI	ACGCGT	1 cut(s)	599
MlyI	GAGTC	2 cut(s)	268, 696
MmeI	TCCRAC	2 cut(s)	559, 967
MnlI	CCTC	9 cut(s)	17, 59, 194, 316, 387, 440, 723, 772, 967
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	5 cut(s)	263, 368, 518, 789, 950
MslI	CAYNNNNRTG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	124, 434
MvaI	CCWGG	2 cut(s)	124, 434
MvnI	CGCG	2 cut(s)	384, 601
MwoI	GCNNNNNNNGC	6 cut(s)	75, 369, 545, 719, 746, 884
NdeII	GATC	4 cut(s)	326, 799, 932, 989
NlaIII	CATG	6 cut(s)	411, 467, 539, 628, 897, 905
NlaIV	GGNNCC	5 cut(s)	328, 398, 399, 761, 991
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	2 cut(s)	628, 897
PaeI	GCATGC	1 cut(s)	897
PagI	TCATGA	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	804
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	4 cut(s)	292, 437, 752, 860
PflMI	CCANNNNNTGG	1 cut(s)	823
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	2 cut(s)	268, 695
PpsI	GAGTC	2 cut(s)	268, 695
PpuMI	RGGWCCY	1 cut(s)	397
PshAI	GACNNNNGTC	1 cut(s)	141
PshBI	ATTAAT	1 cut(s)	518
Psp124BI	GAGCTC	1 cut(s)	816
Psp1406I	AACGTT	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	122, 432
PspGI	CCWGG	2 cut(s)	122, 432
PspN4I	GGNNCC	5 cut(s)	328, 398, 399, 761, 991
PspPI	GGNCC	4 cut(s)	68, 397, 760, 877
PspPPI	RGGWCCY	1 cut(s)	397
PsuI	RGATCY	2 cut(s)	326, 989
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	816
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	5 cut(s)	263, 368, 518, 789, 950
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	4 cut(s)	326, 799, 932, 989
Sau96I	GGNCC	4 cut(s)	68, 397, 760, 877
SchI	GAGTC	2 cut(s)	268, 696
ScrFI	CCNGG	2 cut(s)	124, 434
SduI	GDGCHC	1 cut(s)	816
SetI	ASST	8 cut(s)	169, 198, 214, 270, 451, 546, 816, 1037
SfaNI	GCATC	1 cut(s)	248
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	83
SphI	GCATGC	1 cut(s)	897
Sse9I	AATT	4 cut(s)	24, 248, 260, 364
SsiI	CCGC	2 cut(s)	384, 868
SspMI	CTAG	3 cut(s)	14, 63, 834
SstI	GAGCTC	1 cut(s)	816
StyD4I	CCNGG	2 cut(s)	122, 432
StyI	CCWWGG	3 cut(s)	19, 714, 833
TaaI	ACNGT	4 cut(s)	56, 85, 475, 494
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	777
TasI	AATT	4 cut(s)	24, 248, 260, 364
TatI	WGTACW	1 cut(s)	280
TfiI	GAWTC	4 cut(s)	292, 437, 752, 860
Tru1I	TTAA	5 cut(s)	263, 368, 518, 789, 950
Tru9I	TTAA	5 cut(s)	263, 368, 518, 789, 950
TscAI	CASTG	2 cut(s)	61, 102
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	5 cut(s)	360, 452, 576, 714, 954
TspRI	CASTG	2 cut(s)	61, 102
Van91I	CCANNNNNTGG	1 cut(s)	823
VpaK11BI	GGWCC	1 cut(s)	397
VspI	ATTAAT	1 cut(s)	518
XapI	RAATTY	1 cut(s)	248
XbaI	TCTAGA	1 cut(s)	62
XceI	RCATGY	2 cut(s)	628, 897
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmaJI	CCTAGG	1 cut(s)	833
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	3 cut(s)	14, 63, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.