Rh2BG548700

chitin elicitor receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001281
Physical Location & Seq
Forward (+)
75777023 .. 75780674
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG548700.1

Sequence Viewer

Length: 1314 bp
ATGAAGTTCCGGATTGGATGTGTGTTGTTTGTTGTGTTATGTATTTGTTCTGGAGCAAATTCCCAGTGCGGTAGTAGCCAAAGCTGCGATGCTTTGGGTTCTTATTACTTATGGCAGGGCACCAATCTCACCTTCACCGGAACGTTAATGAACACCAGCGACGCCATCATCACCAGTGTTAACAAATTGCCGAACAAGGACAGTGTTCAATCCGGGACGAGGGTCAATGTTCCGTTCAGCTGTGGCTGCATAAATGGTTCGTTTCTGGGCCACGTGTTCGAGTACGACGTCGTCAAAGGCGACACGTACGAAAAGGTTGCGAGTTTGTACTATGCCAACCTGACCACGGCGGATGCCATGGCGTGGTTCAATGAGTATTCTGAGATTGACATACCCGATAATGCGAAGCTGAATGTGGTGGTCAACTGTTCGTGTGGGAATAGCGCGGTTTCCGAGGACTATGGGTTGTTTATCACGTACCCACTTCTGCCCGGAGACAGTTTGGCTTCGATTGCTAAGACGGAGAATCTGGATCAGAGTTTGCTGCAGGATTATAATCCGACTGTGAACTTTAGCGGAGGGAGTGGTTACGTGTACATTCCGGGCAAAGAGTCCCAGTGCAGTAGTAGCAAAAGCTGCGATGCTTTGGGTTCTTATTCCATGTGGGCGGACGCCAATCTCACCTTCGTCGGAACGGTAATGAACACCACCGCCGACATCATCGTCAGCTACAACAAAGCGACGGTGCCGAACAAGGACAGTGTTCAAACTGGGACGAGGTTCAATGTTCCGTTCAGCTGTGGCTGCATAAATAGTTCGTTTCTGGGCCACGTGTTCGAGTACGACGTCGTCTCCGGCGACACGTACGAAAGGGTTGCGACTGAGTACTATGCCAACCTGACCACGGCGGATGCCATGGCGTGGTTCAATGAGTACCCTGCGAATAACATACCCGATACGAATACGAAGCTGAATGTGGTGGTCAACTGTTCGTGTGGGAATAGCGCGGTTTCCGAGGACTATGGGTTGTTTATCACGTACCCACTTCTGCCCGGAGACAGTTTGGCTTCGATTGCTCAGACGGAGAATCTGGATCCGAGTTTGCTGCAGGAGTACAATCCGGGTGTGAACTTTAGCCAGGGGAGTGGCTATGTGTATATTCCAGGCAAAGATCAAAATGGAAGCTATGTGCCTTTGAAGCAAAGTTCAGCTGGTATGACCTTCTCCAAAAGTCGGTCTGATATCCAATGCCAATGTGTAAGGGTTGACTCAGCAATCAACAGTAATTTGAGCTCAATTTTTGTGTCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LysM Pkinase_Tyr

Protein Analysis

437

Amino Acids

47.08

Weight (kDa)

4.33

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM_RLK PF23577 158 - 201 1.2e-17 LysM domain
LysM_RLK PF23577 345 - 388 4.5e-19 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
AasI GACNNNNNNGTC 1 cut(s) 722
AatII GACGTC 2 cut(s) 291, 849
AccB1I GGYRCC 2 cut(s) 119, 745
AccB7I CCANNNNNTGG 2 cut(s) 363, 921
AccII CGCG 2 cut(s) 446, 1007
AccIII TCCGGA 1 cut(s) 9
AciI CCGC 8 cut(s) 69, 350, 446, 576, 668, 711, 908, 1007
AclI AACGTT 1 cut(s) 143
AclWI GGATC 3 cut(s) 540, 1088, 1101
AcsI RAATTY 1 cut(s) 58
AcvI CACGTG 2 cut(s) 274, 832
AcyI GRCGYC 4 cut(s) 162, 288, 672, 846
AfiI CCNNNNNNNGG 6 cut(s) 219, 346, 363, 904, 921, 1233
AflIII ACRYGT 5 cut(s) 273, 303, 591, 831, 861
AgsI TTSAA 6 cut(s) 209, 370, 767, 784, 928, 1198
AjnI CCWGG 2 cut(s) 1137, 1162
AjuI GAANNNNNNNTTGG 4 cut(s) 116, 148, 668, 700
Alw21I GWGCWC 1 cut(s) 1295
Alw26I GTCTC 3 cut(s) 489, 856, 1050
AlwI GGATC 3 cut(s) 540, 1088, 1101
Aor13HI TCCGGA 1 cut(s) 9
AoxI GGCC 2 cut(s) 268, 826
ApeKI GCWGC 6 cut(s) 84, 246, 544, 636, 804, 1105
ApoI RAATTY 1 cut(s) 58
AspLEI GCGC 2 cut(s) 446, 1007
AspS9I GGNCC 2 cut(s) 268, 826
AsuC2I CCSGG 5 cut(s) 214, 492, 603, 1053, 1122
AsuHPI GGTGA 4 cut(s) 121, 127, 163, 673
BaeGI GKGCMC 1 cut(s) 122
BamHI GGATCC 1 cut(s) 1093
BanI GGYRCC 2 cut(s) 119, 745
BanII GRGCYC 1 cut(s) 1295
BbrPI CACGTG 2 cut(s) 274, 832
Bbv12I GWGCWC 1 cut(s) 1295
BbvI GCAGC 6 cut(s) 71, 233, 531, 623, 791, 1092
BccI CCATC 1 cut(s) 173
BceAI ACGGC 2 cut(s) 363, 921
BcgI CGANNNNNNTGC 6 cut(s) 299, 333, 857, 891, 1087, 1121
BciT130I CCWGG 2 cut(s) 1139, 1164
BcnI CCSGG 5 cut(s) 214, 492, 603, 1053, 1122
BcoDI GTCTC 3 cut(s) 489, 856, 1050
BfmI CTRYAG 2 cut(s) 545, 1106
BisI GCNGC 6 cut(s) 85, 247, 545, 637, 805, 1106
BlsI GCNGC 6 cut(s) 86, 248, 546, 638, 806, 1107
BmcAI AGTACT 1 cut(s) 887
Bme1390I CCNGG 7 cut(s) 214, 492, 603, 1053, 1122, 1139, 1164
BmgT120I GGNCC 2 cut(s) 268, 826
BmiI GGNNCC 3 cut(s) 121, 747, 1095
BmrFI CCNGG 7 cut(s) 214, 492, 603, 1053, 1122, 1139, 1164
BmrI ACTGGG 3 cut(s) 58, 610, 780
BmsI GCATC 4 cut(s) 79, 343, 631, 901
BmuI ACTGGG 3 cut(s) 58, 610, 780
BoxI GACNNNNGTC 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 72
BpuMI CCSGG 5 cut(s) 214, 492, 603, 1053, 1122
BsaAI YACGTR 7 cut(s) 274, 306, 477, 592, 832, 864, 1038
BsaBI GATNNNNATC 1 cut(s) 555
BsaHI GRCGYC 4 cut(s) 162, 288, 672, 846
BsaJI CCNNGG 7 cut(s) 345, 357, 453, 903, 915, 1014, 1138
BsaWI WCCGGW 2 cut(s) 9, 137
BsaXI ACNNNNNCTCC 2 cut(s) 836, 866
Bsc4I CCNNNNNNNGG 6 cut(s) 219, 346, 363, 904, 921, 1233
Bse1I ACTGG 4 cut(s) 64, 174, 616, 775
Bse8I GATNNNNATC 1 cut(s) 555
BseAI TCCGGA 1 cut(s) 9
BseBI CCWGG 2 cut(s) 1139, 1164
BseDI CCNNGG 7 cut(s) 345, 357, 453, 903, 915, 1014, 1138
BseGI GGATG 3 cut(s) 23, 358, 916
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 6 cut(s) 219, 346, 363, 904, 921, 1233
BseMII CTCAG 4 cut(s) 372, 873, 1091, 1284
BseNI ACTGG 4 cut(s) 64, 174, 616, 775
BseSI GKGCMC 1 cut(s) 122
BseXI GCAGC 6 cut(s) 71, 233, 531, 623, 791, 1092
BsgI GTGCAG 1 cut(s) 640
Bsh1236I CGCG 2 cut(s) 446, 1007
BshFI GGCC 2 cut(s) 270, 828
BshNI GGYRCC 2 cut(s) 119, 745
BsiHKAI GWGCWC 1 cut(s) 1295
BsiSI CCGG 8 cut(s) 10, 138, 213, 492, 602, 855, 1053, 1121
BsiWI CGTACG 2 cut(s) 306, 864
BslFI GGGAC 3 cut(s) 229, 598, 787
BslI CCNNNNNNNGG 6 cut(s) 219, 346, 363, 904, 921, 1233
BsmAI GTCTC 3 cut(s) 489, 856, 1050
BsmBI CGTCTC 1 cut(s) 856
BsmFI GGGAC 3 cut(s) 229, 598, 787
BsnI GGCC 2 cut(s) 270, 828
Bsp1286I GDGCHC 2 cut(s) 122, 1295
Bsp13I TCCGGA 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 3 cut(s) 532, 1093, 1171
Bsp19I CCATGG 2 cut(s) 357, 915
BspACI CCGC 8 cut(s) 69, 350, 446, 576, 668, 711, 908, 1007
BspANI GGCC 2 cut(s) 270, 828
BspCNI CTCAG 4 cut(s) 373, 874, 1090, 1283
BspEI TCCGGA 1 cut(s) 9
BspFNI CGCG 2 cut(s) 446, 1007
BspLI GGNNCC 3 cut(s) 121, 747, 1095
BspMAI CTGCAG 2 cut(s) 549, 1110
BspPI GGATC 3 cut(s) 540, 1088, 1101
BspT107I GGYRCC 2 cut(s) 119, 745
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 4 cut(s) 64, 174, 616, 775
BssECI CCNNGG 7 cut(s) 345, 357, 453, 903, 915, 1014, 1138
BssMI GATC 3 cut(s) 532, 1093, 1171
BssNI GRCGYC 4 cut(s) 162, 288, 672, 846
BssT1I CCWWGG 2 cut(s) 357, 915
Bst2UI CCWGG 2 cut(s) 1139, 1164
BstACI GRCGYC 4 cut(s) 162, 288, 672, 846
BstAPI GCANNNNNTGC 1 cut(s) 636
BstAUI TGTACA 1 cut(s) 594
BstBAI YACGTR 7 cut(s) 274, 306, 477, 592, 832, 864, 1038
BstDEI CTNAG 5 cut(s) 381, 516, 882, 1077, 1270
BstDSI CCRYGG 4 cut(s) 345, 357, 903, 915
BstF5I GGATG 3 cut(s) 23, 358, 916
BstFNI CGCG 2 cut(s) 446, 1007
BstHHI GCGC 2 cut(s) 446, 1007
BstKTI GATC 3 cut(s) 535, 1096, 1174
BstMAI GTCTC 3 cut(s) 489, 856, 1050
BstMBI GATC 3 cut(s) 532, 1093, 1171
BstMWI GCNNNNNNNGC 9 cut(s) 75, 84, 246, 512, 627, 636, 804, 1073, 1198
BstNI CCWGG 2 cut(s) 1139, 1164
BstPAI GACNNNNGTC 1 cut(s) 221
BstSCI CCNGG 7 cut(s) 212, 490, 601, 1051, 1120, 1137, 1162
BstSFI CTRYAG 2 cut(s) 545, 1106
BstSLI GKGCMC 1 cut(s) 122
BstUI CGCG 2 cut(s) 446, 1007
BstV1I GCAGC 6 cut(s) 71, 233, 531, 623, 791, 1092
BstX2I RGATCY 1 cut(s) 1093
BstXI CCANNNNNNTGG 1 cut(s) 1145
BstYI RGATCY 1 cut(s) 1093
BsuRI GGCC 2 cut(s) 270, 828
BtgI CCRYGG 4 cut(s) 345, 357, 903, 915
BtgZI GCGATG 2 cut(s) 102, 654
BtsCI GGATG 3 cut(s) 23, 358, 916
BtsIMutI CAGTG 5 cut(s) 71, 181, 208, 623, 766
CfoI GCGC 2 cut(s) 446, 1007
Cfr13I GGNCC 2 cut(s) 268, 826
CseI GACGC 2 cut(s) 170, 680
CviAII CATG 3 cut(s) 358, 661, 916
DdeI CTNAG 5 cut(s) 381, 516, 882, 1077, 1270
DpnI GATC 3 cut(s) 534, 1095, 1173
DpnII GATC 3 cut(s) 532, 1093, 1171
DrdI GACNNNNNNGTC 1 cut(s) 722
DseDI GACNNNNNNGTC 1 cut(s) 722
EciI GGCGGA 3 cut(s) 365, 683, 923
Ecl136II GAGCTC 1 cut(s) 1293
Eco130I CCWWGG 2 cut(s) 357, 915
Eco24I GRGCYC 1 cut(s) 1295
Eco32I GATATC 1 cut(s) 1243
Eco53kI GAGCTC 1 cut(s) 1293
Eco72I CACGTG 2 cut(s) 274, 832
EcoICRI GAGCTC 1 cut(s) 1293
EcoRII CCWGG 2 cut(s) 1137, 1162
EcoRV GATATC 1 cut(s) 1243
EcoT14I CCWWGG 2 cut(s) 357, 915
EcoT38I GRGCYC 1 cut(s) 1295
ErhI CCWWGG 2 cut(s) 357, 915
Esp3I CGTCTC 1 cut(s) 856
FaeI CATG 3 cut(s) 361, 664, 919
FaqI GGGAC 3 cut(s) 229, 598, 787
FatI CATG 3 cut(s) 357, 660, 915
Fnu4HI GCNGC 6 cut(s) 85, 247, 545, 637, 805, 1106
FokI GGATG 3 cut(s) 30, 365, 923
FriOI GRGCYC 1 cut(s) 1295
Fsp4HI GCNGC 6 cut(s) 85, 247, 545, 637, 805, 1106
GlaI GCGC 2 cut(s) 445, 1006
GluI GCNGC 6 cut(s) 85, 247, 545, 637, 805, 1106
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 2 cut(s) 270, 828
HapII CCGG 8 cut(s) 10, 138, 213, 492, 602, 855, 1053, 1121
HgaI GACGC 2 cut(s) 170, 680
HhaI GCGC 2 cut(s) 446, 1007
Hin1I GRCGYC 4 cut(s) 162, 288, 672, 846
Hin1II CATG 3 cut(s) 361, 664, 919
Hin6I GCGC 2 cut(s) 444, 1005
HinP1I GCGC 2 cut(s) 444, 1005
HincII GTYRAC 4 cut(s) 181, 424, 985, 1267
HindII GTYRAC 4 cut(s) 181, 424, 985, 1267
HinfI GANTC 4 cut(s) 526, 611, 1087, 1268
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 8 cut(s) 10, 138, 213, 492, 602, 855, 1053, 1121
HphI GGTGA 4 cut(s) 121, 127, 163, 673
Hpy166II GTNNAC 7 cut(s) 181, 424, 568, 595, 985, 1129, 1267
Hpy188I TCNGA 9 cut(s) 382, 454, 537, 561, 692, 1015, 1080, 1098, 1240
Hpy188III TCNNGA 4 cut(s) 10, 51, 530, 1091
Hpy8I GTNNAC 7 cut(s) 181, 424, 568, 595, 985, 1129, 1267
Hpy99I CGWCG 7 cut(s) 164, 290, 293, 692, 745, 848, 851
HpyAV CCTTC 3 cut(s) 142, 694, 1231
HpyCH4V TGCA 5 cut(s) 249, 547, 621, 807, 1108
HpyF10VI GCNNNNNNNGC 9 cut(s) 75, 84, 246, 512, 627, 636, 804, 1073, 1198
HpyF3I CTNAG 5 cut(s) 381, 516, 882, 1077, 1270
Hsp92I GRCGYC 4 cut(s) 162, 288, 672, 846
Hsp92II CATG 3 cut(s) 361, 664, 919
HspAI GCGC 2 cut(s) 444, 1005
Kpn2I TCCGGA 1 cut(s) 9
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 532, 1093, 1171
LmnI GCTCC 1 cut(s) 53
Lsp1109I GCAGC 6 cut(s) 71, 233, 531, 623, 791, 1092
LweI GCATC 4 cut(s) 79, 343, 631, 901
MaeIII GTNAC 1 cut(s) 587
MalI GATC 3 cut(s) 534, 1095, 1173
MboI GATC 3 cut(s) 532, 1093, 1171
MflI RGATCY 1 cut(s) 1093
MhlI GDGCHC 2 cut(s) 122, 1295
MluCI AATT 4 cut(s) 58, 185, 1285, 1296
MlyI GAGTC 2 cut(s) 620, 1262
MmeI TCCRAC 2 cut(s) 584, 670
MnlI CCTC 5 cut(s) 213, 448, 572, 771, 1009
MroI TCCGGA 1 cut(s) 9
MseI TTAA 2 cut(s) 146, 180
MspA1I CMGCKG 3 cut(s) 240, 798, 1211
MspI CCGG 8 cut(s) 10, 138, 213, 492, 602, 855, 1053, 1121
MspR9I CCNGG 7 cut(s) 214, 492, 603, 1053, 1122, 1139, 1164
MvaI CCWGG 2 cut(s) 1139, 1164
MvnI CGCG 2 cut(s) 446, 1007
MwoI GCNNNNNNNGC 9 cut(s) 75, 84, 246, 512, 627, 636, 804, 1073, 1198
NciI CCSGG 5 cut(s) 214, 492, 603, 1053, 1122
NcoI CCATGG 2 cut(s) 357, 915
NdeII GATC 3 cut(s) 532, 1093, 1171
NlaIII CATG 3 cut(s) 361, 664, 919
NlaIV GGNNCC 3 cut(s) 121, 747, 1095
PcsI WCGNNNNNNNCGW 4 cut(s) 285, 297, 843, 855
PfeI GAWTC 2 cut(s) 526, 1087
Pfl23II CGTACG 2 cut(s) 306, 864
PflFI GACNNNGTC 2 cut(s) 290, 848
PflMI CCANNNNNTGG 2 cut(s) 363, 921
PfoI TCCNGGA 1 cut(s) 212
PkrI GCNGC 6 cut(s) 86, 248, 546, 638, 806, 1107
PleI GAGTC 2 cut(s) 619, 1262
PmaCI CACGTG 2 cut(s) 274, 832
PmlI CACGTG 2 cut(s) 274, 832
PpsI GAGTC 2 cut(s) 619, 1262
Ppu21I YACGTR 7 cut(s) 274, 306, 477, 592, 832, 864, 1038
PshAI GACNNNNGTC 1 cut(s) 221
PsiI TTATAA 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 1295
Psp1406I AACGTT 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 1137, 1162
PspCI CACGTG 2 cut(s) 274, 832
PspGI CCWGG 2 cut(s) 1137, 1162
PspLI CGTACG 2 cut(s) 306, 864
PspN4I GGNNCC 3 cut(s) 121, 747, 1095
PspPI GGNCC 2 cut(s) 268, 826
PstI CTGCAG 2 cut(s) 549, 1110
PsuI RGATCY 1 cut(s) 1093
PsyI GACNNNGTC 2 cut(s) 290, 848
PvuII CAGCTG 3 cut(s) 240, 798, 1211
SacI GAGCTC 1 cut(s) 1295
SaqAI TTAA 2 cut(s) 146, 180
SatI GCNGC 6 cut(s) 85, 247, 545, 637, 805, 1106
Sau3AI GATC 3 cut(s) 532, 1093, 1171
Sau96I GGNCC 2 cut(s) 268, 826
ScaI AGTACT 1 cut(s) 887
SchI GAGTC 2 cut(s) 620, 1262
ScrFI CCNGG 7 cut(s) 214, 492, 603, 1053, 1122, 1139, 1164
SduI GDGCHC 2 cut(s) 122, 1295
SfaNI GCATC 4 cut(s) 79, 343, 631, 901
SfcI CTRYAG 2 cut(s) 545, 1106
Sse9I AATT 4 cut(s) 58, 185, 1285, 1296
SsiI CCGC 8 cut(s) 69, 350, 446, 576, 668, 711, 908, 1007
SstI GAGCTC 1 cut(s) 1295
StyD4I CCNGG 7 cut(s) 212, 490, 601, 1051, 1120, 1137, 1162
StyI CCWWGG 2 cut(s) 357, 915
TaqI TCGA 4 cut(s) 279, 509, 837, 1070
TaqII GACCGA 1 cut(s) 1224
TasI AATT 4 cut(s) 58, 185, 1285, 1296
TatI WGTACW 4 cut(s) 327, 594, 885, 1113
TfiI GAWTC 2 cut(s) 526, 1087
Tru1I TTAA 2 cut(s) 146, 180
Tru9I TTAA 2 cut(s) 146, 180
TscAI CASTG 5 cut(s) 71, 181, 208, 623, 766
TseI GCWGC 6 cut(s) 84, 246, 544, 636, 804, 1105
TspDTI ATGAA 3 cut(s) 17, 164, 716
TspGWI ACGGA 4 cut(s) 222, 536, 780, 1097
TspRI CASTG 5 cut(s) 71, 181, 208, 623, 766
Tth111I GACNNNGTC 2 cut(s) 290, 848
Van91I CCANNNNNTGG 2 cut(s) 363, 921
XapI RAATTY 1 cut(s) 58
ZraI GACGTC 2 cut(s) 289, 847
ZrmI AGTACT 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.