Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001281

Physical Location & Seq

Genomic Coordinates Forward (+)

70993327 .. 70994058

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G044340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAAGTTCCGGATTGGATGTGTGTTGTTTGTTGTGTTGTGTCTTTGTTCTGGAGCAAATTCCCAGTGCGGTAGTAGCCAAAGCTGCGATGCTTTGGGTTCTTATTACTTATGGCAGGGCACCAATCTCACCTTCACCGGAACGTTAATGAACACCAGCGACGCCATCATCGCCAGTGTTAACAAATTGCCGAACAAGGACAGTGTTCAATCCGGGACGAGGGTCAATGTTCCCTTCAGCTGTGGCTGCATAAATGGTTCGTTTCTGGGCCACGTGTTCGAGTACGACTTCGTCAAAGGCGACACGTACGAAAAGGTTGCGAGTTTGTACTATGCCAACCTGACCACGGCGGATGCTATGGCGTGGTTCAATGAGTATTCTGAGATTGACATACCCGATAATGCGAAGCTGAATGTGGTGGTCAACTGTTCGTGTGGGAATAGCGCGGTTTCCGAGGACTATGGGTTGTTTATCACGTACCCACTTCTGCCCGGAGACAGTTTGGCTTCGATTGCTCAGACGGAGAATCTGGATCAGAATTTGCTGCAGGATTATAATCCGGGTGTGAACTTTAGCGGAGGGAGTGGTTACGTGTACATTCCGGGCAAAGGTATGAGCTTTTTTTTGGAGGCCAAAGTTTCATTTGACTATTTGAGTTGTTTGAGTTTTAAAATTTTGATGCCTGCATTTGAAGTATGTAATGAATCTGCAGATTTGGCAAAAATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

243

Amino Acids

26.34

Weight (kDa)

4.33

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM_RLK	PF23577	158 - 201	8.7e-19	LysM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21630
fragaria_vesca	FvH4_3g01490 FvH4_3g01490 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640 FvH4_6g42640
malus_domestica	MD05G1351500.v1.1 MD09G1111800.v1.1 MD13G1277200.v1.1 MD17G1102100.v1.1
prunus_persica	Prupe.3G213000_v2.0.a1 Prupe.3G213100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1 Prupe.4G016100_v2.0.a1
pyrus_communis	pycom05g31860 pycom09g03640 pycom17g09660
rosa_chinensis	RchiOBHm_Chr2g0158511 RchiOBHm_Chr2g0158521 RchiOBHm_Chr5g0002351 RchiOBHm_Chr7g0236981
rosa_laevigata	RLG00000021092 RLG00000021093 RLG00000031021
rosa_multiflora	Rmu_co8416181.1_g000001 Rmu_co8437957.1_g000001 Rmu_sc0005896.1_g000009 Rmu_sc0034002.1_g000001 Rmu_sc0037966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073530 Rroxscaffold_2G00091310 Rroxscaffold_2G00091320
rosa_rugosa	Rorug02G0469800 Rorug02G0469800 Rorug04G0395400 Rorug04G0395400
rosa_samantha	Rh2AG535400 Rh2BG548700 Rh2BG548800 Rh2CG519100 Rh2CG519200 Rh2DG558300 Rh2DG558400 Rh5AG018200 Rh5BG020900 Rh5CG020100 Rh5DG018900 Rh7AG456900
rosa_wichuraiana	Rw2G044340 Rw2G044350 Rw5G001710 Rw6G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	1 cut(s)	446
AccIII	TCCGGA	1 cut(s)	9
AciI	CCGC	4 cut(s)	69, 350, 446, 576
AclI	AACGTT	1 cut(s)	143
AclWI	GGATC	1 cut(s)	540
AcsI	RAATTY	3 cut(s)	58, 538, 672
AcuI	CTGAAG	1 cut(s)	220
AcvI	CACGTG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	5 cut(s)	284, 308, 329, 479, 596
AfiI	CCNNNNNNNGG	3 cut(s)	219, 346, 608
AflIII	ACRYGT	3 cut(s)	273, 303, 591
AgsI	TTSAA	3 cut(s)	209, 370, 692
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	4 cut(s)	84, 240, 409, 618
AluI	AGCT	4 cut(s)	84, 240, 409, 618
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	1 cut(s)	540
Aor13HI	TCCGGA	1 cut(s)	9
AoxI	GGCC	2 cut(s)	268, 630
ApeKI	GCWGC	3 cut(s)	84, 246, 544
ApoI	RAATTY	3 cut(s)	58, 538, 672
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	4 cut(s)	214, 492, 561, 603
AsuHPI	GGTGA	2 cut(s)	121, 127
BaeGI	GKGCMC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	119
BbrPI	CACGTG	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	71, 233, 531
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	363
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BcnI	CCSGG	4 cut(s)	214, 492, 561, 603
BcoDI	GTCTC	1 cut(s)	489
BfmI	CTRYAG	2 cut(s)	545, 708
BisI	GCNGC	3 cut(s)	85, 247, 545
BlsI	GCNGC	3 cut(s)	86, 248, 546
Bme1390I	CCNGG	4 cut(s)	214, 492, 561, 603
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	4 cut(s)	214, 492, 561, 603
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	3 cut(s)	79, 343, 669
BmuI	ACTGGG	1 cut(s)	58
BoxI	GACNNNNGTC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	72
BpuMI	CCSGG	4 cut(s)	214, 492, 561, 603
BsaAI	YACGTR	4 cut(s)	274, 306, 477, 592
BsaBI	GATNNNNATC	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	345, 453
BsaWI	WCCGGW	2 cut(s)	9, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 346, 608
Bse1I	ACTGG	2 cut(s)	64, 174
Bse8I	GATNNNNATC	1 cut(s)	555
BseAI	TCCGGA	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	345, 453
BseGI	GGATG	2 cut(s)	23, 358
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	3 cut(s)	219, 346, 608
BseMII	CTCAG	2 cut(s)	372, 530
BseNI	ACTGG	2 cut(s)	64, 174
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	71, 233, 531
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	2 cut(s)	270, 632
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	6 cut(s)	10, 138, 213, 492, 560, 602
BsiWI	CGTACG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	3 cut(s)	219, 346, 608
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	270, 632
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	9
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	1 cut(s)	532
BspACI	CCGC	4 cut(s)	69, 350, 446, 576
BspANI	GGCC	2 cut(s)	270, 632
BspCNI	CTCAG	2 cut(s)	373, 529
BspEI	TCCGGA	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	1 cut(s)	121
BspMAI	CTGCAG	2 cut(s)	549, 712
BspPI	GGATC	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	119
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	64, 174
BssECI	CCNNGG	2 cut(s)	345, 453
BssMI	GATC	1 cut(s)	532
BssNI	GRCGYC	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	203, 428, 500
BstACI	GRCGYC	1 cut(s)	162
BstAUI	TGTACA	1 cut(s)	594
BstBAI	YACGTR	4 cut(s)	274, 306, 477, 592
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	2 cut(s)	381, 516
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	23, 358
BstFNI	CGCG	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	1 cut(s)	535
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 84, 170, 246, 512, 716
BstPAI	GACNNNNGTC	1 cut(s)	221
BstSCI	CCNGG	4 cut(s)	212, 490, 559, 601
BstSFI	CTRYAG	2 cut(s)	545, 708
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	71, 233, 531
BsuRI	GGCC	2 cut(s)	270, 632
BtgI	CCRYGG	1 cut(s)	345
BtgZI	GCGATG	2 cut(s)	102, 154
BtsCI	GGATG	2 cut(s)	23, 358
BtsIMutI	CAGTG	3 cut(s)	71, 181, 208
Cac8I	GCNNGC	1 cut(s)	684
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	5 cut(s)	283, 307, 328, 478, 595
CviJI	RGCY	9 cut(s)	78, 84, 240, 246, 270, 409, 506, 618, 632
CviKI_1	RGCY	9 cut(s)	78, 84, 240, 246, 270, 409, 506, 618, 632
CviQI	GTAC	5 cut(s)	283, 307, 328, 478, 595
DdeI	CTNAG	2 cut(s)	381, 516
DpnI	GATC	1 cut(s)	534
DpnII	GATC	1 cut(s)	532
DraI	TTTAAA	1 cut(s)	670
EciI	GGCGGA	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	220
Eco72I	CACGTG	1 cut(s)	274
FaiI	YATR	9 cut(s)	112, 251, 333, 359, 392, 462, 555, 614, 697
FaqI	GGGAC	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	85, 247, 545
FokI	GGATG	2 cut(s)	30, 365
Fsp4HI	GCNGC	3 cut(s)	85, 247, 545
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	3 cut(s)	85, 247, 545
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	270, 632
HapII	CCGG	6 cut(s)	10, 138, 213, 492, 560, 602
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	162
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	2 cut(s)	181, 424
HindII	GTYRAC	2 cut(s)	181, 424
HinfI	GANTC	2 cut(s)	526, 704
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	6 cut(s)	10, 138, 213, 492, 560, 602
HphI	GGTGA	2 cut(s)	121, 127
Hpy166II	GTNNAC	4 cut(s)	181, 424, 568, 595
Hpy188I	TCNGA	4 cut(s)	382, 454, 519, 537
Hpy188III	TCNNGA	3 cut(s)	10, 51, 530
Hpy8I	GTNNAC	4 cut(s)	181, 424, 568, 595
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	142, 244
HpyCH4III	ACNGT	3 cut(s)	203, 428, 500
HpyCH4IV	ACGT	5 cut(s)	143, 273, 305, 476, 591
HpyCH4V	TGCA	4 cut(s)	249, 547, 686, 710
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 84, 170, 246, 512, 716
HpyF3I	CTNAG	2 cut(s)	381, 516
HpySE526I	ACGT	5 cut(s)	143, 273, 305, 476, 591
Hsp92I	GRCGYC	1 cut(s)	162
HspAI	GCGC	1 cut(s)	444
Kpn2I	TCCGGA	1 cut(s)	9
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	532
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	3 cut(s)	71, 233, 531
LweI	GCATC	3 cut(s)	79, 343, 669
MaeII	ACGT	5 cut(s)	143, 273, 305, 476, 591
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	1 cut(s)	534
MboI	GATC	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	5 cut(s)	58, 185, 538, 672, 727
MnlI	CCTC	4 cut(s)	213, 448, 572, 622
MroI	TCCGGA	1 cut(s)	9
MseI	TTAA	3 cut(s)	146, 180, 669
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	6 cut(s)	10, 138, 213, 492, 560, 602
MspR9I	CCNGG	4 cut(s)	214, 492, 561, 603
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	6 cut(s)	75, 84, 170, 246, 512, 716
NciI	CCSGG	4 cut(s)	214, 492, 561, 603
NdeII	GATC	1 cut(s)	532
NlaIV	GGNNCC	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	526, 704
Pfl23II	CGTACG	1 cut(s)	306
PflFI	GACNNNGTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	86, 248, 546
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
Ppu21I	YACGTR	4 cut(s)	274, 306, 477, 592
PshAI	GACNNNNGTC	1 cut(s)	221
PsiI	TTATAA	1 cut(s)	555
Psp1406I	AACGTT	1 cut(s)	143
PspCI	CACGTG	1 cut(s)	274
PspLI	CGTACG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	268
PstI	CTGCAG	2 cut(s)	549, 712
PsyI	GACNNNGTC	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	240
RsaI	GTAC	5 cut(s)	284, 308, 329, 479, 596
RsaNI	GTAC	5 cut(s)	283, 307, 328, 478, 595
SaqAI	TTAA	3 cut(s)	146, 180, 669
SatI	GCNGC	3 cut(s)	85, 247, 545
Sau3AI	GATC	1 cut(s)	532
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	4 cut(s)	214, 492, 561, 603
SduI	GDGCHC	1 cut(s)	122
SfaNI	GCATC	3 cut(s)	79, 343, 669
SfcI	CTRYAG	2 cut(s)	545, 708
Sse9I	AATT	5 cut(s)	58, 185, 538, 672, 727
SsiI	CCGC	4 cut(s)	69, 350, 446, 576
StyD4I	CCNGG	4 cut(s)	212, 490, 559, 601
TaaI	ACNGT	3 cut(s)	203, 428, 500
TaiI	ACGT	5 cut(s)	146, 276, 308, 479, 594
TaqI	TCGA	2 cut(s)	279, 509
TasI	AATT	5 cut(s)	58, 185, 538, 672, 727
TatI	WGTACW	2 cut(s)	327, 594
TfiI	GAWTC	2 cut(s)	526, 704
Tru1I	TTAA	3 cut(s)	146, 180, 669
Tru9I	TTAA	3 cut(s)	146, 180, 669
TscAI	CASTG	3 cut(s)	71, 181, 208
TseI	GCWGC	3 cut(s)	84, 246, 544
TspDTI	ATGAA	4 cut(s)	17, 164, 630, 717
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	3 cut(s)	71, 181, 208
Tth111I	GACNNNGTC	1 cut(s)	290
XapI	RAATTY	3 cut(s)	58, 538, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.