Rh2AG551800

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0032792
Physical Location & Seq
Reverse (-)
78253687 .. 78254181
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG551800.1

Sequence Viewer

Length: 495 bp
ATGTACATCGGCAAGGATACAAGAACAAAGTTTCAAAATCCAGGTGGAACCGCGTTTTTCCTTACTTACAACTTTGATGTTGATGAGGTTTATATTGCTTACAGTGTCTCGGATAGATCAGTAAAATTGAGGGTCTGGTTGAACCCTACAGGGCAATTTATACTGATGCTGTGGCAGGGTTCTAATAAAACGTGGTTGGAACTGGGGAATTTACCTGGTGATAACTGTGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCGTAGAGGTGAATCCCTTTCATCATCATGCAAGTGTTTGATTGGTTTTACAGCCAAGTTTCCGAACCAATCGGCGGTGGGGGATTGGTCCAGTGGCTGCGTTATGGAAAAGGTGTTGAAATGTGGTAACCGAATACAAGGTAACTTTTCAAAGGTTGAAAATGTGAAACTGCCGGATCATTCTGTTCTGTTAGAGAATAGGAGTATGAGCGAGTGTCACTTTGAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

164

Amino Acids

18.4

Weight (kDa)

7.51

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 24 - 107 9.5e-18 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032792)

Species Orthologous Gene IDs
rosa_samantha Rh2AG551800 Rh5AG294400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 53
AciI CCGC 3 cut(s) 51, 246, 338
AclWI GGATC 1 cut(s) 447
AcsI RAATTY 1 cut(s) 208
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 6 cut(s) 35, 142, 382, 414, 422, 488
AjnI CCWGG 2 cut(s) 40, 214
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 1 cut(s) 447
AlwNI CAGNNNCTG 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 360
ApoI RAATTY 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 248, 351
AsuHPI GGTGA 2 cut(s) 230, 284
AvaII GGWCC 2 cut(s) 248, 351
BbvI GCAGC 1 cut(s) 347
BciT130I CCWGG 2 cut(s) 42, 216
BciVI GTATCC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 112
BfmI CTRYAG 1 cut(s) 147
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 362
Bme1390I CCNGG 2 cut(s) 42, 216
Bme18I GGWCC 2 cut(s) 248, 351
BmgT120I GGNCC 2 cut(s) 248, 351
BmiI GGNNCC 2 cut(s) 49, 250
BmrFI CCNGG 2 cut(s) 42, 216
BmrI ACTGGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 156
BmuI ACTGGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 207, 354
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 2 cut(s) 42, 216
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 241
BseNI ACTGG 2 cut(s) 207, 354
BseXI GCAGC 1 cut(s) 347
Bsh1236I CGCG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 234
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 116, 439
BspACI CCGC 3 cut(s) 51, 246, 338
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 2 cut(s) 49, 250
BspPI GGATC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 241
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 207, 354
BssMI GATC 2 cut(s) 116, 439
Bst2UI CCWGG 2 cut(s) 42, 216
Bst4CI ACNGT 2 cut(s) 104, 227
BstAUI TGTACA 1 cut(s) 3
BstEII GGTNACC 1 cut(s) 389
BstFNI CGCG 1 cut(s) 53
BstKTI GATC 2 cut(s) 119, 442
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 116, 439
BstNI CCWGG 2 cut(s) 42, 216
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 2 cut(s) 40, 214
BstSFI CTRYAG 1 cut(s) 147
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 347
BsuI GTATCC 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 109, 361
CaiI CAGNNNCTG 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 248, 351
CsiI ACCWGGT 1 cut(s) 214
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 291
CviJI RGCY 2 cut(s) 317, 360
CviKI_1 RGCY 2 cut(s) 317, 360
CviQI GTAC 1 cut(s) 4
DpnI GATC 2 cut(s) 118, 441
DpnII GATC 2 cut(s) 116, 439
Eco47I GGWCC 2 cut(s) 248, 351
Eco91I GGTNACC 1 cut(s) 389
EcoO65I GGTNACC 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 40, 214
FaeI CATG 1 cut(s) 294
FaiI YATR 6 cut(s) 93, 161, 237, 292, 368, 470
FaqI GGGAC 1 cut(s) 234
FatI CATG 1 cut(s) 290
Fnu4HI GCNGC 1 cut(s) 361
Fsp4HI GCNGC 1 cut(s) 361
GluI GCNGC 1 cut(s) 361
HapII CCGG 1 cut(s) 437
Hin1II CATG 1 cut(s) 294
HinfI GANTC 1 cut(s) 275
HpaII CCGG 1 cut(s) 437
HphI GGTGA 2 cut(s) 230, 284
Hpy188I TCNGA 2 cut(s) 112, 327
HpyCH4III ACNGT 2 cut(s) 104, 227
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 1 cut(s) 294
Kzo9I GATC 2 cut(s) 116, 439
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 156
MabI ACCWGGT 1 cut(s) 214
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 3 cut(s) 389, 404, 479
MalI GATC 2 cut(s) 118, 441
MboI GATC 2 cut(s) 116, 439
MluCI AATT 3 cut(s) 125, 155, 208
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 3 cut(s) 79, 123, 263
MslI CAYNNNNRTG 2 cut(s) 289, 295
MspI CCGG 1 cut(s) 437
MspR9I CCNGG 2 cut(s) 42, 216
MvaI CCWGG 2 cut(s) 42, 216
MvnI CGCG 1 cut(s) 53
NdeII GATC 2 cut(s) 116, 439
NlaIII CATG 1 cut(s) 294
NlaIV GGNNCC 2 cut(s) 49, 250
NmuCI GTSAC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 362
Psp6I CCWGG 2 cut(s) 40, 214
PspEI GGTNACC 1 cut(s) 389
PspGI CCWGG 2 cut(s) 40, 214
PspN4I GGNNCC 2 cut(s) 49, 250
PspPI GGNCC 2 cut(s) 248, 351
PstNI CAGNNNCTG 1 cut(s) 360
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 289, 295
SatI GCNGC 1 cut(s) 361
Sau3AI GATC 2 cut(s) 116, 439
Sau96I GGNCC 2 cut(s) 248, 351
ScrFI CCNGG 2 cut(s) 42, 216
SetI ASST 8 cut(s) 46, 90, 194, 217, 274, 378, 406, 420
SexAI ACCWGGT 1 cut(s) 214
SfaNI GCATC 1 cut(s) 156
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 2 cut(s) 248, 351
SmiMI CAYNNNNRTG 2 cut(s) 289, 295
Sse9I AATT 3 cut(s) 125, 155, 208
SsiI CCGC 3 cut(s) 51, 246, 338
StyD4I CCNGG 2 cut(s) 40, 214
TaaI ACNGT 2 cut(s) 104, 227
TaiI ACGT 1 cut(s) 194
TasI AATT 3 cut(s) 125, 155, 208
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 275
TscAI CASTG 2 cut(s) 109, 361
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 1 cut(s) 360
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 2 cut(s) 109, 361
VpaK11BI GGWCC 2 cut(s) 248, 351
XapI RAATTY 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.