Rh5AG294400

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0032792
Physical Location & Seq
Reverse (-)
40825928 .. 40826460
533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG294400.1

Sequence Viewer

Length: 438 bp
ATGTACATCGGCAAGGATACAAGAACAGATTTTCAAAATCCAGGTGGAACAGCGTTTTTCCTTACTCACAACTTTGATGTTGATGAGGTTTATCTTGCTTACAGTGTCTCAGATAGCTTAGTAAAATTGAGGGTCTGGTTGAATTCTATAGGGCAATTTATACTGCTGCTGTGGCAAGGTTCTAGTAAAACGTGGTTGGAACAGGGGAATTTACCTGCTGATAACTATGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCATAAAGGTGAACCATTGTCATCATCATGCAAGTGTTTGATTGGTTTTACAGCCAAGTTTCCTAACCAATCAGCTGTGGGAAATTGGTCCAGTGGCTGCGTTAGGGAAAAGATGTTAACATGTGGTAATGGCATACAAGAACTATTCTTACACAGCTTATGCGCATGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

145

Amino Acids

16.07

Weight (kDa)

6.39

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 25 - 107 6.5e-15 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032792)

Species Orthologous Gene IDs
rosa_samantha Rh2AG551800 Rh5AG294400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 427
Acc36I ACCTGC 1 cut(s) 223
AciI CCGC 1 cut(s) 246
AcsI RAATTY 2 cut(s) 142, 208
AfaI GTAC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 383
AgsI TTSAA 2 cut(s) 35, 142
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 3 cut(s) 117, 338, 420
AluI AGCT 3 cut(s) 117, 338, 420
Alw26I GTCTC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 166, 360
ApoI RAATTY 2 cut(s) 142, 208
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 2 cut(s) 248, 351
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 2 cut(s) 248, 351
BbvI GCAGC 2 cut(s) 153, 347
BciT130I CCWGG 1 cut(s) 42
BciVI GTATCC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 223
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 2 cut(s) 167, 361
BlsI GCNGC 2 cut(s) 168, 362
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 2 cut(s) 248, 351
BmgT120I GGNCC 2 cut(s) 248, 351
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 42
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 354
BseXI GCAGC 2 cut(s) 153, 347
BslFI GGGAC 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 234
Bsp1407I TGTACA 1 cut(s) 3
BspACI CCGC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 250
BspMI ACCTGC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 241
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 109, 118
BstHHI GCGC 1 cut(s) 428
BstMAI GTCTC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 2 cut(s) 387, 432
BstSCI CCNGG 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 153, 347
BsuI GTATCC 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 109, 361
BveI ACCTGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 360
CfoI GCGC 1 cut(s) 428
Cfr13I GGNCC 2 cut(s) 248, 351
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 291, 384, 429
CviJI RGCY 5 cut(s) 117, 317, 338, 360, 420
CviKI_1 RGCY 5 cut(s) 117, 317, 338, 360, 420
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 109, 118
Eco47I GGWCC 2 cut(s) 248, 351
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 40
FaeI CATG 3 cut(s) 294, 387, 432
FaqI GGGAC 1 cut(s) 234
FatI CATG 3 cut(s) 290, 383, 428
Fnu4HI GCNGC 2 cut(s) 167, 361
Fsp4HI GCNGC 2 cut(s) 167, 361
FspAI RTGCGCAY 1 cut(s) 427
FspBI CTAG 1 cut(s) 183
FspI TGCGCA 1 cut(s) 427
GlaI GCGC 1 cut(s) 427
GluI GCNGC 2 cut(s) 167, 361
HhaI GCGC 1 cut(s) 428
Hin1II CATG 3 cut(s) 294, 387, 432
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HpaI GTTAAC 1 cut(s) 381
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 2 cut(s) 275, 381
Hpy188I TCNGA 1 cut(s) 112
Hpy8I GTNNAC 2 cut(s) 275, 381
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 2 cut(s) 109, 118
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 3 cut(s) 294, 387, 432
HspAI GCGC 1 cut(s) 426
KspAI GTTAAC 1 cut(s) 381
LpnPI CCDG 7 cut(s) 27, 54, 121, 188, 228, 274, 367
Lsp1109I GCAGC 2 cut(s) 153, 347
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 191
MluCI AATT 5 cut(s) 125, 142, 155, 208, 346
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 2 cut(s) 79, 123
MseI TTAA 1 cut(s) 380
MslI CAYNNNNRTG 4 cut(s) 270, 289, 295, 433
MspA1I CMGCKG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 172
NlaIII CATG 3 cut(s) 294, 387, 432
NlaIV GGNNCC 1 cut(s) 250
NsbI TGCGCA 1 cut(s) 427
NspI RCATGY 2 cut(s) 387, 432
PciI ACATGT 1 cut(s) 383
PkrI GCNGC 2 cut(s) 168, 362
PscI ACATGT 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 2 cut(s) 248, 351
PsrI GAACNNNNNNTAC 2 cut(s) 396, 428
PstNI CAGNNNCTG 1 cut(s) 360
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 4 cut(s) 270, 289, 295, 433
SaqAI TTAA 1 cut(s) 380
SatI GCNGC 2 cut(s) 167, 361
Sau96I GGNCC 2 cut(s) 248, 351
ScrFI CCNGG 1 cut(s) 42
SetI ASST 9 cut(s) 46, 90, 119, 181, 194, 217, 274, 340, 422
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 2 cut(s) 248, 351
SmiMI CAYNNNNRTG 4 cut(s) 270, 289, 295, 433
Sse9I AATT 5 cut(s) 125, 142, 155, 208, 346
SsiI CCGC 1 cut(s) 246
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 194
TasI AATT 5 cut(s) 125, 142, 155, 208, 346
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TscAI CASTG 2 cut(s) 109, 361
TseI GCWGC 2 cut(s) 166, 360
TspRI CASTG 2 cut(s) 109, 361
VpaK11BI GGWCC 2 cut(s) 248, 351
XapI RAATTY 2 cut(s) 142, 208
XceI RCATGY 2 cut(s) 387, 432
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.