Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0029393

Physical Location & Seq

Genomic Coordinates Forward (+)

84355672 .. 84356694

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG619700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTCTGCCGGAAACCGGTGCTTGAGGCAGACCTTCAGATGGCAAGTCTTGCAAGTACTATTATTCGAAAAGGTCAGAATCTCCTTGCACCCCTTAACAGGGCATGTGGGCTTCTTCTTCTTTTTCGGGTCGCAATTCCCGGACTTGCTGTGCCTCTCCAGCAACACCTTCTGGCTCTCTTCGCCGTCGTGGCCGGTGGTCTCTATGGAGGTGGAGCAGACTTCACAAATGATCACTTTCCGGCTGTTGTGGTCGGCTTTGGGGCAGTCGTGGGACTTGTAAGAGCGGTGTTCGACGCAGAACACGTCATGGCAGCCGGCGCATTTGAATGGGAGGAAATCGAGTTGGTGGCAATCAGGGTGCTGGCAATGTCTTCCCAAATCTGGAAAAGCTTCTGTTCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

135

Amino Acids

14.33

Weight (kDa)

6.26

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0029393)

Species	Orthologous Gene IDs
pyrus_communis	pycom111g03100
rosa_samantha	Rh2AG619700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	287
AciI	CCGC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	5 cut(s)	16, 40, 99, 100, 384
AflIII	ACRYGT	1 cut(s)	304
AgeI	ACCGGT	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	329
AjiI	CACGTC	1 cut(s)	307
AluBI	AGCT	1 cut(s)	393
AluI	AGCT	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	314
AsiGI	ACCGGT	1 cut(s)	16
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	141
AsuII	TTCGAA	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	206
BglI	GCCNNNNNGGC	1 cut(s)	191
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 40, 99, 100, 384
Bse118I	RCCGGY	3 cut(s)	16, 194, 317
Bse3DI	GCAATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	5 cut(s)	16, 40, 99, 100, 384
BseMI	GCAATG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	326
BshFI	GGCC	1 cut(s)	194
BshTI	ACCGGT	1 cut(s)	16
BsiSI	CCGG	6 cut(s)	10, 17, 141, 195, 242, 318
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	5 cut(s)	16, 40, 99, 100, 384
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	3 cut(s)	16, 194, 317
BssAI	RCCGGY	3 cut(s)	16, 194, 317
BssMI	GATC	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	319, 366
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 160, 182, 191, 320
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	319, 366
CfoI	GCGC	1 cut(s)	323
Cfr10I	RCCGGY	3 cut(s)	16, 194, 317
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	57
CspAI	ACCGGT	1 cut(s)	16
CviAII	CATG	2 cut(s)	105, 310
CviJI	RGCY	7 cut(s)	112, 176, 194, 245, 258, 317, 393
CviKI_1	RGCY	7 cut(s)	112, 176, 194, 245, 258, 317, 393
CviQI	GTAC	1 cut(s)	57
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	20
FaeI	CATG	2 cut(s)	108, 313
FaiI	YATR	3 cut(s)	106, 207, 311
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	2 cut(s)	104, 309
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	315
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	6 cut(s)	10, 17, 141, 195, 242, 318
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	108, 313
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	6 cut(s)	10, 17, 141, 195, 242, 318
Hpy188I	TCNGA	2 cut(s)	39, 78
Hpy188III	TCNNGA	2 cut(s)	385, 405
Hpy99I	CGWCG	2 cut(s)	191, 299
HpyAV	CCTTC	2 cut(s)	44, 179
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	53, 89
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 160, 182, 191, 320
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	108, 313
HspAI	GCGC	1 cut(s)	321
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	1 cut(s)	326
MaeII	ACGT	1 cut(s)	306
MalI	GATC	1 cut(s)	234
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	1 cut(s)	232
MboII	GAAGA	4 cut(s)	107, 110, 172, 366
MluCI	AATT	1 cut(s)	135
MnlI	CCTC	4 cut(s)	19, 165, 203, 328
MroNI	GCCGGC	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	328
MspI	CCGG	6 cut(s)	10, 17, 141, 195, 242, 318
MspR9I	CCNGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	5 cut(s)	50, 160, 182, 191, 320
NaeI	GCCGGC	1 cut(s)	319
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	232
NgoMIV	GCCGGC	1 cut(s)	317
NlaIII	CATG	2 cut(s)	108, 313
NspI	RCATGY	1 cut(s)	108
NspV	TTCGAA	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PdiI	GCCGGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	79
PfoI	TCCNGGA	1 cut(s)	139
PinAI	ACCGGT	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	316
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	232
ScaI	AGTACT	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	6 cut(s)	36, 76, 171, 214, 309, 395
SfuI	TTCGAA	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	139
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	67, 294, 342
TasI	AATT	1 cut(s)	135
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	1 cut(s)	314
XceI	RCATGY	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	392
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.