Rh2AG644100

Methionine adenosyltransferase 2 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0024928
Physical Location & Seq
Reverse (-)
86582665 .. 86584767
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG644100.1

Sequence Viewer

Length: 423 bp
ATGGATTTGAAGACTGGCAATGGATTTGAAGCCATATCTCATCAGTTTGGTCCGCCTGATGTGGTAGTAAACTGTGCTGCACTTTCGGTTCCTCGTGCCTGTACAATGGATCCTGCTGCAGCTATACTGATAAATGCATATGCGTTAATAAATGTAGATGCATTAAAGCATGTTTCTAAGGAGCTATGTCAATCTCCCATGGCCTCGCTCTTGCCGTATAACGTTAAGAACAGCAATAATCACTACAACTTGATTGGATTTCTCATCGACCTTGATTGGATTGTATGGATGGATAAATATAAGATGGGGAAGATTGTTGCGGGAATTCTTGGTAGAATAGAAATGTGCAGCATTAGTCTGTATGGGAGATTGCAAAGCCTTCTAGATCTTTTAGTTTGTATCAGTTCGTTTGGTTTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RmlD_sub_bind

Protein Analysis

140

Amino Acids

15.36

Weight (kDa)

6.24

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024928)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0477641
rosa_samantha Rh2AG644100 Rh2BG654900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 320
AclI AACGTT 1 cut(s) 222
AclWI GGATC 2 cut(s) 104, 117
AcsI RAATTY 1 cut(s) 324
AfaI GTAC 1 cut(s) 103
AgsI TTSAA 2 cut(s) 10, 29
AluBI AGCT 2 cut(s) 122, 184
AluI AGCT 2 cut(s) 122, 184
AlwI GGATC 2 cut(s) 104, 117
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 4 cut(s) 77, 116, 119, 348
ApoI RAATTY 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 50
AvaII GGWCC 1 cut(s) 50
BamHI GGATCC 1 cut(s) 109
BauI CACGAG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 4 cut(s) 64, 103, 131, 360
BccI CCATC 2 cut(s) 283, 298
BceAI ACGGC 1 cut(s) 199
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 117
BglII AGATCT 1 cut(s) 385
BisI GCNGC 4 cut(s) 78, 117, 120, 349
BlsI GCNGC 4 cut(s) 79, 118, 121, 350
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 90, 111
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 198
Bse1I ACTGG 2 cut(s) 19, 418
Bse3DI GCAATG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 294
BseMI GCAATG 1 cut(s) 25
BseNI ACTGG 2 cut(s) 19, 418
BseXI GCAGC 4 cut(s) 64, 103, 131, 360
BsgI GTGCAG 2 cut(s) 63, 367
BshFI GGCC 1 cut(s) 203
BsnI GGCC 1 cut(s) 203
Bsp1407I TGTACA 1 cut(s) 101
Bsp143I GATC 2 cut(s) 109, 385
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 2 cut(s) 53, 320
BspANI GGCC 1 cut(s) 203
BspLI GGNNCC 2 cut(s) 90, 111
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 2 cut(s) 104, 117
BsrDI GCAATG 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 101
BsrI ACTGG 2 cut(s) 19, 418
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 109, 385
BssSI CACGAG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 294
BstKTI GATC 2 cut(s) 112, 388
BstMBI GATC 2 cut(s) 109, 385
BstNSI RCATGY 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 4 cut(s) 64, 103, 131, 360
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 2 cut(s) 109, 385
BstYI RGATCY 2 cut(s) 109, 385
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 102
CviAII CATG 2 cut(s) 170, 199
CviJI RGCY 5 cut(s) 32, 122, 184, 203, 378
CviKI_1 RGCY 5 cut(s) 32, 122, 184, 203, 378
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 177
DpnI GATC 2 cut(s) 111, 387
DpnII GATC 2 cut(s) 109, 385
EciI GGCGGA 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 2 cut(s) 139, 163
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 173, 202
FatI CATG 2 cut(s) 169, 198
FauI CCCGC 1 cut(s) 313
FauNDI CATATG 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 78, 117, 120, 349
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 4 cut(s) 78, 117, 120, 349
FspBI CTAG 1 cut(s) 383
GluI GCNGC 4 cut(s) 78, 117, 120, 349
HaeIII GGCC 1 cut(s) 203
Hin1II CATG 2 cut(s) 173, 202
Hpy166II GTNNAC 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 6 cut(s) 80, 119, 137, 161, 348, 373
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 173, 202
Kzo9I GATC 2 cut(s) 109, 385
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 3 cut(s) 69, 112, 126
Lsp1109I GCAGC 4 cut(s) 64, 103, 131, 360
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 383
MaeII ACGT 1 cut(s) 222
MalI GATC 2 cut(s) 111, 387
MboI GATC 2 cut(s) 109, 385
MboII GAAGA 2 cut(s) 22, 322
MflI RGATCY 2 cut(s) 109, 385
MluCI AATT 1 cut(s) 324
MnlI CCTC 2 cut(s) 102, 214
Mph1103I ATGCAT 2 cut(s) 139, 163
MseI TTAA 3 cut(s) 146, 164, 225
NcoI CCATGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 139
NdeII GATC 2 cut(s) 109, 385
NlaIII CATG 2 cut(s) 173, 202
NlaIV GGNNCC 2 cut(s) 90, 111
NsiI ATGCAT 2 cut(s) 139, 163
NspI RCATGY 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PkrI GCNGC 4 cut(s) 79, 118, 121, 350
Psp1406I AACGTT 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 90, 111
PspPI GGNCC 1 cut(s) 50
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 2 cut(s) 109, 385
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 146, 164, 225
SatI GCNGC 4 cut(s) 78, 117, 120, 349
Sau3AI GATC 2 cut(s) 109, 385
Sau96I GGNCC 1 cut(s) 50
SetI ASST 4 cut(s) 124, 186, 225, 273
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 1 cut(s) 50
Sse9I AATT 1 cut(s) 324
SsiI CCGC 2 cut(s) 53, 320
SspMI CTAG 1 cut(s) 383
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 267
TasI AATT 1 cut(s) 324
TatI WGTACW 1 cut(s) 101
Tru1I TTAA 3 cut(s) 146, 164, 225
Tru9I TTAA 3 cut(s) 146, 164, 225
TseI GCWGC 4 cut(s) 77, 116, 119, 348
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 1 cut(s) 324
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 1 cut(s) 173
XspI CTAG 1 cut(s) 383
Zsp2I ATGCAT 2 cut(s) 139, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.