Rh2BG031900

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0032975
Physical Location & Seq
Forward (+)
2181806 .. 2181985
180 bp
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UTR
Exon/CDS
Intron
Rh2BG031900.1

Sequence Viewer

Length: 180 bp
ATGACACATCCGCGGAGTAAAAACCCCTGCAGCCTCATGTCGTCACAGACCCGGACCCAGGTGGAGGATGGGAAGGCGGTGGTTAAAAAACACAGCGATGAATCGTTGAGGAAGATGGTGTTGAAGCAGAAATTGCTGGCCAAGCAATCGTATTTGGTCCGTGGGTTTGGTTTTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

59

Amino Acids

6.72

Weight (kDa)

10.29

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032975)

Species Orthologous Gene IDs
rosa_samantha Rh2BG031900 Rh6DG362000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 13
AciI CCGC 3 cut(s) 11, 13, 77
AcoI YGGCCR 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 58, 64
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 57
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 54, 157
AsuC2I CCSGG 1 cut(s) 52
AvaII GGWCC 2 cut(s) 54, 157
BalI TGGCCA 1 cut(s) 140
BbvI GCAGC 1 cut(s) 42
BccI CCATC 2 cut(s) 62, 109
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 1 cut(s) 52
BfmI CTRYAG 1 cut(s) 28
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 2 cut(s) 52, 59
Bme18I GGWCC 2 cut(s) 54, 157
BmgT120I GGNCC 2 cut(s) 54, 157
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 52, 59
BpuMI CCSGG 1 cut(s) 52
BsaJI CCNNGG 3 cut(s) 11, 57, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 64
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 3 cut(s) 11, 57, 160
BseGI GGATG 2 cut(s) 7, 73
BseLI CCNNNNNNNGG 2 cut(s) 58, 64
BseXI GCAGC 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 13
BshFI GGCC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 52
BslI CCNNNNNNNGG 2 cut(s) 58, 64
BsnI GGCC 1 cut(s) 140
BspACI CCGC 3 cut(s) 11, 13, 77
BspANI GGCC 1 cut(s) 140
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 11, 57, 160
Bst2UI CCWGG 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 138
BstDSI CCRYGG 2 cut(s) 11, 160
BstF5I GGATG 2 cut(s) 7, 73
BstFNI CGCG 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 133, 142
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 50, 57
BstSFI CTRYAG 1 cut(s) 28
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 2 cut(s) 11, 160
BtgZI GCGATG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 7, 73
Cac8I GCNNGC 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 54, 157
Cfr42I CCGCGG 1 cut(s) 14
CviAII CATG 1 cut(s) 37
CviJI RGCY 2 cut(s) 33, 140
CviKI_1 RGCY 2 cut(s) 33, 140
EaeI YGGCCR 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 54, 157
EcoRII CCWGG 1 cut(s) 57
FaeI CATG 1 cut(s) 40
FaiI YATR 1 cut(s) 38
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 52
Hin1II CATG 1 cut(s) 40
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 142
Hsp92II CATG 1 cut(s) 40
KspI CCGCGG 1 cut(s) 14
LpnPI CCDG 5 cut(s) 40, 44, 65, 71, 122
Lsp1109I GCAGC 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 42
MboII GAAGA 1 cut(s) 124
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 1 cut(s) 131
MluNI TGGCCA 1 cut(s) 140
MnlI CCTC 3 cut(s) 44, 58, 102
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 2 cut(s) 52, 59
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 133, 142
NciI CCSGG 1 cut(s) 52
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 54, 157
PstI CTGCAG 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 96
SacII CCGCGG 1 cut(s) 14
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 31
Sau96I GGNCC 2 cut(s) 54, 157
ScrFI CCNGG 2 cut(s) 52, 59
SetI ASST 1 cut(s) 63
SfcI CTRYAG 1 cut(s) 28
Sfr303I CCGCGG 1 cut(s) 14
SgrBI CCGCGG 1 cut(s) 14
SinI GGWCC 2 cut(s) 54, 157
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 1 cut(s) 131
SsiI CCGC 3 cut(s) 11, 13, 77
StyD4I CCNGG 2 cut(s) 50, 57
TasI AATT 1 cut(s) 131
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 149
VpaK11BI GGWCC 2 cut(s) 54, 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.