Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0022819

Physical Location & Seq

Genomic Coordinates Reverse (-)

25122698 .. 25132746

Gene Structure 10049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG246800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCATCCCAGTCCCAGATTGTTGGTTATCCCCGCATAAGACCCGAGAGAGCTCAAGTTTGCTTTGGAATCATTCTTGGAGTTGACATTGATCTCGGTGAGTTTGTAATTCCGATGTTGATGGCAAGTGTTCCAAAGTTGGATCTAGACTCAACCTTTGAACAGAAGAATGATATCGCCAAAGCTGTGGAAGAAGAACTTGAAAAGGCCATGTCACATTATGGGTTTGAGACAGTACAAATATCTGTCAGGGCTTGGCATAGCAAGGCAGAGTCCAAATATCTGTCAGGGCTTGGCATAGCAAGGCAGCGCCAGGCTATTGTGGATGGGCTGAGAGACAGCGTGCTGGCTTTCTCTGAGAATGTACCTGGGACATCATGGATATGGTTCTGTGCAACTGCTGCAAGGGCATTTAAATCTGTTCTTCAGGGTATCCTACTTTGTTCTAACGGCAGTGAGGCAGTGGTGGATTCTGAGAATGATGTAGCTGCCGTAAATGTAAGTACTTGGAGCACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

173

Amino Acids

18.93

Weight (kDa)

5.06

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022819)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0234121
rosa_samantha	Rh2BG246800 Rh2CG606500 Rh5AG536200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	410
AfaI	GTAC	3 cut(s)	237, 366, 505
AgsI	TTSAA	2 cut(s)	161, 203
AjnI	CCWGG	2 cut(s)	312, 367
AluBI	AGCT	3 cut(s)	53, 185, 488
AluI	AGCT	3 cut(s)	53, 185, 488
Alw21I	GWGCWC	2 cut(s)	55, 515
Alw26I	GTCTC	2 cut(s)	224, 330
AlwI	GGATC	1 cut(s)	150
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	3 cut(s)	307, 401, 488
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspLEI	GCGC	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	55
Bbv12I	GWGCWC	2 cut(s)	55, 515
BbvI	GCAGC	3 cut(s)	319, 388, 475
BccI	CCATC	2 cut(s)	115, 320
BceAI	ACGGC	2 cut(s)	466, 476
BciT130I	CCWGG	2 cut(s)	314, 369
BciVI	GTATCC	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	224, 330
BfaI	CTAG	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	443
BisI	GCNGC	3 cut(s)	308, 402, 489
BlsI	GCNGC	3 cut(s)	309, 403, 490
BmcAI	AGTACT	1 cut(s)	505
Bme1390I	CCNGG	2 cut(s)	314, 369
BmeT110I	CYCGRG	1 cut(s)	44
BmrFI	CCNGG	2 cut(s)	314, 369
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	4
BpuEI	CTTGAG	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	10
BseBI	CCWGG	2 cut(s)	314, 369
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	2 cut(s)	5, 331
BseMII	CTCAG	3 cut(s)	323, 348, 465
BseNI	ACTGG	1 cut(s)	10
BseXI	GCAGC	3 cut(s)	319, 388, 475
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	55, 515
BsiHKCI	CYCGRG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	385
BsmAI	GTCTC	2 cut(s)	224, 330
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	55, 515
Bsp143I	GATC	2 cut(s)	91, 142
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	3 cut(s)	324, 349, 466
BspPI	GGATC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	2 cut(s)	91, 142
Bst2UI	CCWGG	2 cut(s)	314, 369
Bst4CI	ACNGT	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	344, 348
BstDEI	CTNAG	3 cut(s)	332, 357, 474
BstF5I	GGATG	2 cut(s)	5, 331
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	2 cut(s)	94, 145
BstMAI	GTCTC	2 cut(s)	224, 330
BstMBI	GATC	2 cut(s)	91, 142
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 407
BstNI	CCWGG	2 cut(s)	314, 369
BstSCI	CCNGG	2 cut(s)	312, 367
BstV1I	GCAGC	3 cut(s)	319, 388, 475
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	2 cut(s)	23, 187
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	5, 331
BtsI	GCAGTG	2 cut(s)	460, 468
BtsIMutI	CAGTG	2 cut(s)	460, 468
Cac8I	GCNNGC	2 cut(s)	344, 348
CfoI	GCGC	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	236, 365, 504
CviAII	CATG	2 cut(s)	211, 378
CviJI	RGCY	9 cut(s)	53, 185, 209, 254, 292, 317, 331, 350, 488
CviKI_1	RGCY	9 cut(s)	53, 185, 209, 254, 292, 317, 331, 350, 488
CviQI	GTAC	3 cut(s)	236, 365, 504
DdeI	CTNAG	3 cut(s)	332, 357, 474
DpnI	GATC	2 cut(s)	93, 144
DpnII	GATC	2 cut(s)	91, 142
DraI	TTTAAA	1 cut(s)	415
Ecl136II	GAGCTC	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	312, 367
EcoRV	GATATC	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	55
FaeI	CATG	2 cut(s)	214, 381
FaiI	YATR	7 cut(s)	38, 212, 222, 261, 299, 379, 385
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	2 cut(s)	210, 377
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	3 cut(s)	308, 402, 489
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	3 cut(s)	308, 402, 489
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	3 cut(s)	308, 402, 489
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	2 cut(s)	214, 381
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	4 cut(s)	69, 149, 272, 470
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	3 cut(s)	114, 358, 475
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	395, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 407
HpyF3I	CTNAG	3 cut(s)	332, 357, 474
Hsp92II	CATG	2 cut(s)	214, 381
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	91, 142
LmnI	GCTCC	1 cut(s)	510
Lsp1109I	GCAGC	3 cut(s)	319, 388, 475
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	2 cut(s)	93, 144
MboI	GATC	2 cut(s)	91, 142
MboII	GAAGA	4 cut(s)	178, 203, 206, 416
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	55, 515
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	143, 281
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	1 cut(s)	451
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	382
MspR9I	CCNGG	2 cut(s)	314, 369
MvaI	CCWGG	2 cut(s)	314, 369
MwoI	GCNNNNNNNGC	2 cut(s)	401, 407
NdeII	GATC	2 cut(s)	91, 142
NlaIII	CATG	2 cut(s)	214, 381
NmuCI	GTSAC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	69, 470
PkrI	GCNGC	3 cut(s)	309, 403, 490
PleI	GAGTC	2 cut(s)	143, 280
PpsI	GAGTC	2 cut(s)	143, 280
Psp124BI	GAGCTC	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	312, 367
PspGI	CCWGG	2 cut(s)	312, 367
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	3 cut(s)	237, 366, 505
RsaNI	GTAC	3 cut(s)	236, 365, 504
RseI	CAYNNNNRTG	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	3 cut(s)	308, 402, 489
Sau3AI	GATC	2 cut(s)	91, 142
ScaI	AGTACT	1 cut(s)	505
SchI	GAGTC	2 cut(s)	143, 281
ScrFI	CCNGG	2 cut(s)	314, 369
SduI	GDGCHC	2 cut(s)	55, 515
SetI	ASST	5 cut(s)	55, 158, 187, 370, 490
SfaNI	GCATC	1 cut(s)	14
SmiI	ATTTAAAT	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	312, 367
SwaI	ATTTAAAT	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	235
TasI	AATT	1 cut(s)	108
TatI	WGTACW	2 cut(s)	235, 503
TfiI	GAWTC	2 cut(s)	69, 470
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	460, 468
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	3 cut(s)	307, 401, 488
Tsp45I	GTSAC	1 cut(s)	213
TspRI	CASTG	2 cut(s)	460, 468
XbaI	TCTAGA	1 cut(s)	145
XspI	CTAG	1 cut(s)	146
ZrmI	AGTACT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.