Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0022819

Physical Location & Seq

Genomic Coordinates Reverse (-)

92123781 .. 92126076

Gene Structure 2296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG536200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTGGTGCAGAATATTTGTTAGGCTTGAGGGAAAGTGTTCCAAAGTTGGATCTAGACTCAACCTTTGAACAGAAGAATGATATCGCCAAAGCTGTGGAAGAAGAACTTGAAAAGGCCATGTCACATTATGGGTTTGAGACAGTACAAATATCTGTCAGGGCTTGGCATAGCAAGGCAGAGTCCAAATATCTGTCAGGGCTTGGCATAGCAAGGCAGCGCCAGGCTATTGTGGACTGGCTGAGAGACAGCATGCTGGCTTTCTCTGAGAATGTACCTGGGACATCATGGATATGGTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

101

Amino Acids

11.57

Weight (kDa)

5.1

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022819)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0234121
rosa_samantha	Rh2BG246800 Rh2CG606500 Rh5AG536200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	60
AfaI	GTAC	2 cut(s)	147, 276
AgsI	TTSAA	2 cut(s)	71, 113
AjnI	CCWGG	2 cut(s)	222, 277
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw26I	GTCTC	2 cut(s)	134, 240
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	217
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	224, 279
BcoDI	GTCTC	2 cut(s)	134, 240
BfaI	CTAG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	223
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	2 cut(s)	224, 279
BmrFI	CCNGG	2 cut(s)	224, 279
BpuEI	CTTGAG	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	224, 279
BseDI	CCNNGG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	233, 258
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	295
BsmAI	GTCTC	2 cut(s)	134, 240
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	234, 259
BspPI	GGATC	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	1 cut(s)	52
Bst2UI	CCWGG	2 cut(s)	224, 279
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	254, 258
BstDEI	CTNAG	2 cut(s)	242, 267
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	2 cut(s)	134, 240
BstMBI	GATC	1 cut(s)	52
BstNI	CCWGG	2 cut(s)	224, 279
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	222, 277
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	254, 258
CfoI	GCGC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	146, 275
CviAII	CATG	3 cut(s)	121, 253, 288
CviJI	RGCY	9 cut(s)	5, 27, 95, 119, 164, 202, 227, 241, 260
CviKI_1	RGCY	9 cut(s)	5, 27, 95, 119, 164, 202, 227, 241, 260
CviQI	GTAC	2 cut(s)	146, 275
DdeI	CTNAG	2 cut(s)	242, 267
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	222, 277
EcoRV	GATATC	1 cut(s)	85
FaeI	CATG	3 cut(s)	124, 256, 291
FaiI	YATR	7 cut(s)	122, 132, 171, 209, 254, 289, 295
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	3 cut(s)	120, 252, 287
Fnu4HI	GCNGC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	218
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	124, 256, 291
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	59, 182
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	242, 267
Hsp92II	CATG	3 cut(s)	124, 256, 291
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	9 cut(s)	145, 183, 209, 223, 236, 242, 264, 286, 291
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	3 cut(s)	88, 113, 116
MflI	RGATCY	1 cut(s)	52
MlyI	GAGTC	2 cut(s)	53, 191
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	292
MspR9I	CCNGG	2 cut(s)	224, 279
MvaI	CCWGG	2 cut(s)	224, 279
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	3 cut(s)	124, 256, 291
NmuCI	GTSAC	1 cut(s)	123
NspI	RCATGY	1 cut(s)	256
PaeI	GCATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	2 cut(s)	53, 190
PpsI	GAGTC	2 cut(s)	53, 190
Psp6I	CCWGG	2 cut(s)	222, 277
PspGI	CCWGG	2 cut(s)	222, 277
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	2 cut(s)	147, 276
RsaNI	GTAC	2 cut(s)	146, 275
RseI	CAYNNNNRTG	1 cut(s)	292
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	1 cut(s)	52
SchI	GAGTC	2 cut(s)	53, 191
ScrFI	CCNGG	2 cut(s)	224, 279
SetI	ASST	3 cut(s)	68, 97, 280
SmiMI	CAYNNNNRTG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
SphI	GCATGC	1 cut(s)	256
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	222, 277
TaaI	ACNGT	1 cut(s)	145
TatI	WGTACW	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	123
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	123
XbaI	TCTAGA	1 cut(s)	55
XceI	RCATGY	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.