Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0026240

Physical Location & Seq

Genomic Coordinates Reverse (-)

25642131 .. 25643609

Gene Structure 1479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG250200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCAACAGAACCGGTATTGTTCTGTATCGGTGGTTAGCCTGATACCAAGTTTGACTTGGAGATTCTTCCTAATTTCATCGATTCACAAAGTTGTGGTTACTGTTACAAGGCCAGGAATGGCGTTGGATGTTGCTGAATTCCTGTGGAACAAGTTCTTGAAGTCTCTAGCAGAGATGGAGTCTGAATTAGCAGGTACTATTACCATCCCTTTCTTCGACTCGATAAAAGATCTCATGAAATGCTTCAACGAAATCAAAGGTATTATGAATGAGATAGATATCATGCCGGAACCATATACCTACTCTAAAACTATTGATGTGCTCTACAAGCTCAACGATGCATTGGCGGAGTGCCGAGTGTTCACACTTGAGTGCAAGGAACTTAATAAGAATGTGTTAAGCTTCTATGTTCCAAGAATTAGATTTGTTGGAAGGATGAAGACTAAGGTGAAGGATATAGGGGAGCTTCTGAAGCCGGATCTGAAAATGGGGGCGCCGCAAGAAGAAACTGGCAAATCTCCGGAGATAATCGAACCTAAAGTCTTGTCAAAAGTTTTTGGATTTGATAAGGAAGCCAAGGAGATTGAGAACCTGCTGGTGGGGGGTGCTAGTTCTAGCAGTACAAGATTTACGGCAATTGGGGTAGTGGGAATTGCTGGTGCGGGTAAGACAACCCTGGTGCAGAAGGTTTTGGAGAGAGAGGGAGTGAAGAAGAGGTTTAGTACTATACTTTGGTTGCCCTTTTATGGTATAAGTGAAGGAGAACAACAATACAGTAAGCTCGGCTTTAAGACATGTATTCTTGACAAGGGGGGCAAATCCCCTGATGAGAAGATTGTTGGCCTGGGGAAGCTCTTGGAAAGGCTGAAGCAACTGTTATCGGGTAAAAGGTATCTGATTGTGTTGGATGATGTGTGTCATCAGCACATTAACATTATGGAACGCTTAGTCAGTGGGTTGCCTAAAGAAAGTGGCGGCGCTGTCATTGTCACTAGCAGATTGAAGGAAGTGGCTCAAAAGATTGGAGAACAACAATACCTGATTCCTGTTGAGGCACAGGAAGATATTTGCTCGAGAATAATTGAGGAGACTATACAGAGTGATGTGGGATTGCCAATGACTAAGAAGGAAATGAAGGATCAATGCCATGGTCTACCGTTGGTTGCAGAAACACTAGCACATTTTATTCCTCAAATGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004143 GO:0004672 GO:0005488 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007205 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0009653 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019992 GO:0023052 GO:0030554 GO:0032101 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040012 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050920 GO:0050926 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat Lectin_C NB-ARC VWD

Protein Analysis

400

Amino Acids

44.78

Weight (kDa)

8.26

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	210 - 350	1.3e-19	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026240)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG237500 Rh2BG250200 Rh2DG245000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	182, 600
AccB1I	GGYRCC	1 cut(s)	493
AccI	GTMKAC	1 cut(s)	1153
AccIII	TCCGGA	1 cut(s)	520
AciI	CCGC	4 cut(s)	347, 497, 662, 975
AclWI	GGATC	2 cut(s)	486, 1146
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	2 cut(s)	491, 887
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	3 cut(s)	196, 622, 724
AfiI	CCNNNNNNNGG	2 cut(s)	598, 746
AflIII	ACRYGT	1 cut(s)	794
AgeI	ACCGGT	1 cut(s)	12
AgsI	TTSAA	3 cut(s)	160, 247, 1003
AjnI	CCWGG	3 cut(s)	112, 675, 843
AleI	CACNNNNGTG	1 cut(s)	370
AluBI	AGCT	5 cut(s)	331, 402, 466, 781, 853
AluI	AGCT	5 cut(s)	331, 402, 466, 781, 853
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	2 cut(s)	168, 1082
AlwI	GGATC	2 cut(s)	486, 1146
Ama87I	CYCGRG	1 cut(s)	1072
Aor13HI	TCCGGA	1 cut(s)	520
AoxI	GGCC	2 cut(s)	110, 841
ApoI	RAATTY	1 cut(s)	137
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
AsiGI	ACCGGT	1 cut(s)	12
Asp700I	GAANNNNTTC	2 cut(s)	152, 242
AspLEI	GCGC	2 cut(s)	496, 980
AsuHPI	GGTGA	1 cut(s)	460
AvaI	CYCGRG	1 cut(s)	1072
BanI	GGYRCC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	324
BccI	CCATC	2 cut(s)	169, 212
BceAI	ACGGC	1 cut(s)	648
BciT130I	CCWGG	3 cut(s)	114, 677, 845
BcoDI	GTCTC	2 cut(s)	168, 1082
BfaI	CTAG	5 cut(s)	167, 609, 615, 993, 1175
BfoI	RGCGCY	2 cut(s)	497, 981
BfuAI	ACCTGC	2 cut(s)	182, 600
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	2 cut(s)	497, 976
BlsI	GCNGC	2 cut(s)	498, 977
BmcAI	AGTACT	1 cut(s)	724
Bme1390I	CCNGG	3 cut(s)	114, 677, 845
BmeT110I	CYCGRG	1 cut(s)	1072
BmiI	GGNNCC	2 cut(s)	291, 495
BmrFI	CCNGG	3 cut(s)	114, 677, 845
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	4 cut(s)	576, 675, 844, 1147
BsaWI	WCCGGW	2 cut(s)	12, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	598, 746
Bse118I	RCCGGY	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	514
Bse8I	GATNNNNATC	1 cut(s)	278
BseAI	TCCGGA	1 cut(s)	520
BseBI	CCWGG	3 cut(s)	114, 677, 845
BseCI	ATCGAT	1 cut(s)	80
BseDI	CCNNGG	4 cut(s)	576, 675, 844, 1147
BseGI	GGATG	4 cut(s)	133, 204, 441, 913
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	598, 746
BseNI	ACTGG	1 cut(s)	514
BseRI	GAGGAG	1 cut(s)	1100
BsgI	GTGCAG	1 cut(s)	701
BshFI	GGCC	2 cut(s)	112, 843
BshNI	GGYRCC	1 cut(s)	493
BshTI	ACCGGT	1 cut(s)	12
BshVI	ATCGAT	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	1072
BsiSI	CCGG	4 cut(s)	13, 287, 476, 521
BslI	CCNNNNNNNGG	2 cut(s)	598, 746
BsmAI	GTCTC	2 cut(s)	168, 1082
BsnI	GGCC	2 cut(s)	112, 843
BsoBI	CYCGRG	1 cut(s)	1072
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp13I	TCCGGA	1 cut(s)	520
Bsp143I	GATC	3 cut(s)	229, 478, 1138
Bsp19I	CCATGG	1 cut(s)	1147
BspACI	CCGC	4 cut(s)	347, 497, 662, 975
BspANI	GGCC	2 cut(s)	112, 843
BspDI	ATCGAT	1 cut(s)	80
BspEI	TCCGGA	1 cut(s)	520
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	291, 495
BspMI	ACCTGC	2 cut(s)	182, 600
BspPI	GGATC	2 cut(s)	486, 1146
BspT107I	GGYRCC	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	4 cut(s)	576, 675, 844, 1147
BssMI	GATC	3 cut(s)	229, 478, 1138
BssNI	GRCGYC	1 cut(s)	494
BssT1I	CCWWGG	2 cut(s)	576, 1147
Bst2UI	CCWGG	3 cut(s)	114, 677, 845
Bst4CI	ACNGT	4 cut(s)	103, 776, 876, 1158
Bst6I	CTCTTC	1 cut(s)	707
BstACI	GRCGYC	1 cut(s)	494
BstDEI	CTNAG	3 cut(s)	444, 946, 1122
BstDSI	CCRYGG	1 cut(s)	1147
BstF5I	GGATG	4 cut(s)	133, 204, 441, 913
BstH2I	RGCGCY	2 cut(s)	497, 981
BstHHI	GCGC	2 cut(s)	496, 980
BstKTI	GATC	3 cut(s)	232, 481, 1141
BstMAI	GTCTC	2 cut(s)	168, 1082
BstMBI	GATC	3 cut(s)	229, 478, 1138
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 472
BstNI	CCWGG	3 cut(s)	114, 677, 845
BstNSI	RCATGY	1 cut(s)	798
BstSCI	CCNGG	3 cut(s)	112, 675, 843
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	2 cut(s)	229, 478
BstYI	RGATCY	2 cut(s)	229, 478
Bsu15I	ATCGAT	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	112, 843
BsuTUI	ATCGAT	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	1147
BtsCI	GGATG	4 cut(s)	133, 204, 441, 913
BtsIMutI	CAGTG	1 cut(s)	958
BveI	ACCTGC	2 cut(s)	182, 600
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	2 cut(s)	496, 980
Cfr10I	RCCGGY	1 cut(s)	12
ClaI	ATCGAT	1 cut(s)	80
Csp6I	GTAC	3 cut(s)	195, 621, 723
CspAI	ACCGGT	1 cut(s)	12
CviAII	CATG	4 cut(s)	235, 283, 795, 1148
CviQI	GTAC	3 cut(s)	195, 621, 723
DdeI	CTNAG	3 cut(s)	444, 946, 1122
DinI	GGCGCC	1 cut(s)	495
DpnI	GATC	3 cut(s)	231, 480, 1140
DpnII	GATC	3 cut(s)	229, 478, 1138
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
EciI	GGCGGA	1 cut(s)	362
Eco130I	CCWWGG	2 cut(s)	576, 1147
Eco32I	GATATC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	491, 887
Eco88I	CYCGRG	1 cut(s)	1072
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	3 cut(s)	112, 675, 843
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	576, 1147
EcoT22I	ATGCAT	1 cut(s)	343
EgeI	GGCGCC	1 cut(s)	495
EheI	GGCGCC	1 cut(s)	495
ErhI	CCWWGG	2 cut(s)	576, 1147
FaeI	CATG	4 cut(s)	238, 286, 798, 1151
FalI	AAGNNNNNCTT	4 cut(s)	40, 72, 770, 802
FatI	CATG	4 cut(s)	234, 282, 794, 1147
FauI	CCCGC	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	1153
Fnu4HI	GCNGC	2 cut(s)	497, 976
FokI	GGATG	4 cut(s)	140, 191, 448, 920
Fsp4HI	GCNGC	2 cut(s)	497, 976
FspBI	CTAG	5 cut(s)	167, 609, 615, 993, 1175
GlaI	GCGC	2 cut(s)	495, 979
GluI	GCNGC	2 cut(s)	497, 976
HaeII	RGCGCY	2 cut(s)	497, 981
HaeIII	GGCC	2 cut(s)	112, 843
HapII	CCGG	4 cut(s)	13, 287, 476, 521
HhaI	GCGC	2 cut(s)	496, 980
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	4 cut(s)	238, 286, 798, 1151
Hin6I	GCGC	2 cut(s)	494, 978
HinP1I	GCGC	2 cut(s)	494, 978
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	5 cut(s)	63, 82, 179, 218, 1042
HpaII	CCGG	4 cut(s)	13, 287, 476, 521
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	2 cut(s)	363, 1154
Hpy188I	TCNGA	4 cut(s)	184, 471, 483, 897
Hpy188III	TCNNGA	5 cut(s)	157, 235, 521, 803, 1074
Hpy8I	GTNNAC	2 cut(s)	363, 1154
HpyAV	CCTTC	7 cut(s)	426, 445, 679, 752, 997, 1120, 1129
HpyCH4III	ACNGT	4 cut(s)	103, 776, 876, 1158
HpyCH4V	TGCA	5 cut(s)	4, 341, 375, 682, 1166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 472
HpyF3I	CTNAG	3 cut(s)	444, 946, 1122
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	238, 286, 798, 1151
HspAI	GCGC	2 cut(s)	494, 978
KasI	GGCGCC	1 cut(s)	493
Kpn2I	TCCGGA	1 cut(s)	520
Kzo9I	GATC	3 cut(s)	229, 478, 1138
LmnI	GCTCC	1 cut(s)	463
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	5 cut(s)	167, 609, 615, 993, 1175
MaeIII	GTNAC	3 cut(s)	97, 103, 988
MalI	GATC	3 cut(s)	231, 480, 1140
MboI	GATC	3 cut(s)	229, 478, 1138
MboII	GAAGA	8 cut(s)	58, 205, 451, 515, 721, 724, 844, 1073
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	2 cut(s)	229, 478
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	7 cut(s)	72, 137, 185, 417, 636, 651, 1080
Mly113I	GGCGCC	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	188, 212
MmeI	TCCRAC	3 cut(s)	105, 409, 885
MnlI	CCTC	5 cut(s)	694, 708, 1045, 1078, 1200
Mph1103I	ATGCAT	1 cut(s)	343
MroI	TCCGGA	1 cut(s)	520
MroXI	GAANNNNTTC	2 cut(s)	152, 242
MseI	TTAA	4 cut(s)	384, 398, 789, 930
MslI	CAYNNNNRTG	1 cut(s)	370
MspI	CCGG	4 cut(s)	13, 287, 476, 521
MspR9I	CCNGG	3 cut(s)	114, 677, 845
MunI	CAATTG	1 cut(s)	636
MvaI	CCWGG	3 cut(s)	114, 677, 845
MwoI	GCNNNNNNNGC	2 cut(s)	328, 472
NarI	GGCGCC	1 cut(s)	494
NcoI	CCATGG	1 cut(s)	1147
NdeII	GATC	3 cut(s)	229, 478, 1138
NlaIII	CATG	4 cut(s)	238, 286, 798, 1151
NlaIV	GGNNCC	2 cut(s)	291, 495
NmeAIII	GCCGAG	2 cut(s)	380, 762
NmuCI	GTSAC	1 cut(s)	988
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	1 cut(s)	798
OliI	CACNNNNGTG	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	1072
PagI	TCATGA	1 cut(s)	234
PciI	ACATGT	1 cut(s)	794
PdmI	GAANNNNTTC	2 cut(s)	152, 242
PfeI	GAWTC	3 cut(s)	63, 82, 1042
PinAI	ACCGGT	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	498, 977
PleI	GAGTC	2 cut(s)	187, 212
PluTI	GGCGCC	1 cut(s)	497
PpsI	GAGTC	2 cut(s)	187, 212
PscI	ACATGT	1 cut(s)	794
Psp6I	CCWGG	3 cut(s)	112, 675, 843
PspGI	CCWGG	3 cut(s)	112, 675, 843
PspN4I	GGNNCC	2 cut(s)	291, 495
PsuI	RGATCY	2 cut(s)	229, 478
RsaI	GTAC	3 cut(s)	196, 622, 724
RsaNI	GTAC	3 cut(s)	195, 621, 723
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	4 cut(s)	384, 398, 789, 930
SatI	GCNGC	2 cut(s)	497, 976
Sau3AI	GATC	3 cut(s)	229, 478, 1138
ScaI	AGTACT	1 cut(s)	724
SchI	GAGTC	2 cut(s)	188, 212
ScrFI	CCNGG	3 cut(s)	114, 677, 845
SduI	GDGCHC	1 cut(s)	324
SfaNI	GCATC	1 cut(s)	328
SfoI	GGCGCC	1 cut(s)	495
Sfr274I	CTCGAG	1 cut(s)	1072
SlaI	CTCGAG	1 cut(s)	1072
SmiMI	CAYNNNNRTG	1 cut(s)	370
SmlI	CTYRAG	2 cut(s)	368, 1072
SmoI	CTYRAG	2 cut(s)	368, 1072
Sse9I	AATT	7 cut(s)	72, 137, 185, 417, 636, 651, 1080
SsiI	CCGC	4 cut(s)	347, 497, 662, 975
SspDI	GGCGCC	1 cut(s)	493
SspMI	CTAG	5 cut(s)	167, 609, 615, 993, 1175
StyD4I	CCNGG	3 cut(s)	112, 675, 843
StyI	CCWWGG	2 cut(s)	576, 1147
TaaI	ACNGT	4 cut(s)	103, 776, 876, 1158
TaqI	TCGA	5 cut(s)	80, 216, 221, 531, 1073
TasI	AATT	7 cut(s)	72, 137, 185, 417, 636, 651, 1080
TatI	WGTACW	2 cut(s)	620, 722
TauI	GCSGC	2 cut(s)	499, 978
TfiI	GAWTC	3 cut(s)	63, 82, 1042
Tru1I	TTAA	4 cut(s)	384, 398, 789, 930
Tru9I	TTAA	4 cut(s)	384, 398, 789, 930
TscAI	CASTG	1 cut(s)	958
TseFI	GTSAC	1 cut(s)	988
Tsp45I	GTSAC	1 cut(s)	988
TspDTI	ATGAA	5 cut(s)	66, 251, 281, 452, 1148
TspRI	CASTG	1 cut(s)	958
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	1 cut(s)	798
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XhoI	CTCGAG	1 cut(s)	1072
XmiI	GTMKAC	1 cut(s)	1153
XmnI	GAANNNNTTC	2 cut(s)	152, 242
XspI	CTAG	5 cut(s)	167, 609, 615, 993, 1175
ZrmI	AGTACT	1 cut(s)	724
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.