Rh2DG245000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
24989518 .. 24990177
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG245000.1

Sequence Viewer

Length: 234 bp
ATGCAACAGAACCGGTATTGTTCTGTATCGGTGGTTAGCCTGATACCAAGTTTGACTTCGAGATTCTTCCTAATTTCATCGATTCACAAAGTTGTGGTTAGTGTTGCAAGGCCAGGAATGGCGTTGGATGTTGCTGAATTCCTGTGGAACAAGTTCTTGAAGTCTCTAGCAGAGATGGAGTCTGAATTAGCAGCTCAACGATGCATTGGCGGAGTGCCGAGTGTTCACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.48

Weight (kDa)

8.8

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0026240)

Species Orthologous Gene IDs
rosa_samantha Rh2AG237500 Rh2BG250200 Rh2DG245000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 137
AgeI ACCGGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 112
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 168
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 137
AsiGI ACCGGT 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 203
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 167
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 12
BseBI CCWGG 1 cut(s) 114
BseCI ATCGAT 1 cut(s) 80
BseGI GGATG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 112
BshTI ACCGGT 1 cut(s) 12
BshVI ATCGAT 1 cut(s) 80
BsiSI CCGG 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 168
BsnI GGCC 1 cut(s) 112
BspACI CCGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 112
BspDI ATCGAT 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 203
Bsu15I ATCGAT 1 cut(s) 80
BsuRI GGCC 1 cut(s) 112
BsuTUI ATCGAT 1 cut(s) 80
BtsCI GGATG 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 12
ClaI ATCGAT 1 cut(s) 80
CspAI ACCGGT 1 cut(s) 12
CviJI RGCY 3 cut(s) 39, 112, 194
CviKI_1 RGCY 3 cut(s) 39, 112, 194
EciI GGCGGA 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 206
FalI AAGNNNNNCTT 2 cut(s) 40, 72
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 192
HaeIII GGCC 1 cut(s) 112
HapII CCGG 1 cut(s) 13
HinfI GANTC 3 cut(s) 63, 82, 179
HpaII CCGG 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 60, 157
Hpy8I GTNNAC 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 4, 107, 204
LpnPI CCDG 5 cut(s) 26, 53, 99, 126, 155
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 167
MboII GAAGA 1 cut(s) 58
MluCI AATT 3 cut(s) 72, 137, 185
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 152
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
NsiI ATGCAT 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 2 cut(s) 63, 82
PinAI ACCGGT 1 cut(s) 12
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
SatI GCNGC 1 cut(s) 192
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 114
SetI ASST 1 cut(s) 196
SfaNI GCATC 1 cut(s) 191
Sse9I AATT 3 cut(s) 72, 137, 185
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 112
TaqI TCGA 2 cut(s) 59, 80
TasI AATT 3 cut(s) 72, 137, 185
TfiI GAWTC 2 cut(s) 63, 82
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 66
XapI RAATTY 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.