Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0030296

Physical Location & Seq

Genomic Coordinates Reverse (-)

30538542 .. 30539213

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG279600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGTTGCTTTCATTTGGGGCTTCCGCAATTTTTGTTGGAGTTTATGAACCTACAAAGCAGAAATTGTTAAAGATGTTTCCTGAAAATCTAAGCGCTTTAGCTCATTTTACTGCGGGAGCTTGTGGAGGCATTGCTGCTTCACTCATTCGTGTTCCAACAGAGGTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

56

Amino Acids

5.9

Weight (kDa)

6.54

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030296)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0051521
rosa_samantha	Rh2BG279600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	24, 113
AfeI	AGCGCT	1 cut(s)	94
AluBI	AGCT	2 cut(s)	101, 119
AluI	AGCT	2 cut(s)	101, 119
Aor51HI	AGCGCT	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	121
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	129
BseMI	GCAATG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	121
BspACI	CCGC	2 cut(s)	24, 113
BsrDI	GCAATG	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	95
CviJI	RGCY	3 cut(s)	20, 101, 119
CviKI_1	RGCY	3 cut(s)	20, 101, 119
DdeI	CTNAG	1 cut(s)	89
Eco47III	AGCGCT	1 cut(s)	94
FaiI	YATR	1 cut(s)	45
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	96
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	1 cut(s)	93
Lsp1109I	GCAGC	1 cut(s)	121
MluCI	AATT	2 cut(s)	27, 62
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	2 cut(s)	119, 154
MseI	TTAA	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	1 cut(s)	135
SetI	ASST	4 cut(s)	52, 103, 121, 165
SgeI	CNNG	4 cut(s)	92, 126, 132, 161
Sse9I	AATT	2 cut(s)	27, 62
SsiI	CCGC	2 cut(s)	24, 113
TasI	AATT	2 cut(s)	27, 62
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.