Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0021803

Physical Location & Seq

Genomic Coordinates Reverse (-)

71470381 .. 71485934

Gene Structure 15554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG508600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAAGCAAGTAGGGCTCACCGCAACCAAGACCTCGCCGTCCAAGTGAAAATGGAGTTCCACGATGTTGGGGCTTCTTGTGGATCAGACTCAGAAGGGTTGAGCTTCAGAAGGAGGGTTGCTTTGGGAGATCGTGCATTTGTGCTGCGCTTCGTAGGGCAGCGGAGTATCATGCCTAAGTGGTTGAATAGTCTAGCTAGATTGTTTTGTTTATATAAGAAATATGCGGCTTACAGAGCAAGAAATGGCATCGTTACCAGGTTGAGCCTAACCTGGTTATCTTCCATTCTTGTGTATGAGATTTTCAATGCTTATCGTCAATCACACTTCTTATCTTGGATCGGACAAATTAGTGACGATGGAAATTCTATTTCATCAAATGATATTCATTTTGCTGTTATCCGTATGCCGCGCAACTACTGCTGCACCGCGGATGTCAAAGGTGATTGCCCAACGAAGTGTGGAAACATCCCGTACCCTTTCGGGATTGGACCTGATGCAAGTTGTTACTATGACGAATGGTTTCAGATCGACTGCAACAAATCTACCGAAGGGAAGCCTTTCTTAATTGAGGCGTACCAAATTGGAGGTGCTGAGTATATCTATCGGAGGAAGGCTTCAAGTGTACAGCCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

212

Amino Acids

24.13

Weight (kDa)

9.01

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	150 - 190	1.1e-07	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021803)

Species	Orthologous Gene IDs
rosa_samantha	Rh2BG508400 Rh2BG508600 Rh2DG520100 Rh2DG520300 Rh2DG520400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccII	CGCG	2 cut(s)	412, 431
AciI	CCGC	6 cut(s)	22, 163, 227, 410, 429, 431
AclWI	GGATC	2 cut(s)	91, 347
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	91
AfaI	GTAC	3 cut(s)	476, 578, 627
AgsI	TTSAA	3 cut(s)	187, 307, 621
AjnI	CCWGG	2 cut(s)	257, 272
AluBI	AGCT	2 cut(s)	105, 197
AluI	AGCT	2 cut(s)	105, 197
AlwI	GGATC	2 cut(s)	91, 347
ApeKI	GCWGC	3 cut(s)	145, 160, 423
ApoI	RAATTY	1 cut(s)	364
Asp700I	GAANNNNTTC	2 cut(s)	522, 560
AspLEI	GCGC	2 cut(s)	150, 414
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	11, 455
AvaII	GGWCC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	132, 172, 410
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	259, 274
BfaI	CTAG	2 cut(s)	194, 198
BisI	GCNGC	5 cut(s)	146, 161, 228, 410, 424
BlsI	GCNGC	5 cut(s)	147, 162, 229, 411, 425
Bme1390I	CCNGG	2 cut(s)	259, 274
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	491
BmrFI	CCNGG	2 cut(s)	259, 274
BmsI	GCATC	2 cut(s)	258, 487
BsaJI	CCNNGG	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	259, 274
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	439, 468
BseMII	CTCAG	2 cut(s)	105, 585
BseXI	GCAGC	3 cut(s)	132, 172, 410
BsgI	GTGCAG	1 cut(s)	409
Bsh1236I	CGCG	2 cut(s)	412, 431
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp1407I	TGTACA	1 cut(s)	625
Bsp143I	GATC	4 cut(s)	83, 130, 339, 528
BspACI	CCGC	6 cut(s)	22, 163, 227, 410, 429, 431
BspCNI	CTCAG	2 cut(s)	104, 586
BspFNI	CGCG	2 cut(s)	412, 431
BspPI	GGATC	2 cut(s)	91, 347
BsrGI	TGTACA	1 cut(s)	625
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	4 cut(s)	83, 130, 339, 528
Bst2UI	CCWGG	2 cut(s)	259, 274
BstAPI	GCANNNNNTGC	1 cut(s)	420
BstAUI	TGTACA	1 cut(s)	625
BstDEI	CTNAG	3 cut(s)	91, 177, 594
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	439, 468
BstFNI	CGCG	2 cut(s)	412, 431
BstHHI	GCGC	2 cut(s)	150, 414
BstKTI	GATC	4 cut(s)	86, 133, 342, 531
BstMBI	GATC	4 cut(s)	83, 130, 339, 528
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 236, 420
BstNI	CCWGG	2 cut(s)	259, 274
BstSCI	CCNGG	2 cut(s)	257, 272
BstUI	CGCG	2 cut(s)	412, 431
BstV1I	GCAGC	3 cut(s)	132, 172, 410
BstXI	CCANNNNNNTGG	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	439, 468
CfoI	GCGC	2 cut(s)	150, 414
Cfr13I	GGNCC	1 cut(s)	491
Cfr42I	CCGCGG	1 cut(s)	432
CsiI	ACCWGGT	2 cut(s)	257, 272
Csp6I	GTAC	3 cut(s)	475, 577, 626
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	9 cut(s)	17, 74, 105, 197, 230, 267, 559, 617, 631
CviKI_1	RGCY	9 cut(s)	17, 74, 105, 197, 230, 267, 559, 617, 631
CviQI	GTAC	3 cut(s)	475, 577, 626
DdeI	CTNAG	3 cut(s)	91, 177, 594
DpnI	GATC	4 cut(s)	85, 132, 341, 530
DpnII	GATC	4 cut(s)	83, 130, 339, 528
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	257, 272
EcoT38I	GRGCYC	1 cut(s)	19
FaeI	CATG	1 cut(s)	175
FaiI	YATR	8 cut(s)	173, 214, 216, 225, 297, 407, 513, 600
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	5 cut(s)	146, 161, 228, 410, 424
FokI	GGATG	2 cut(s)	446, 455
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	5 cut(s)	146, 161, 228, 410, 424
FspBI	CTAG	2 cut(s)	194, 198
GlaI	GCGC	2 cut(s)	149, 413
GluI	GCNGC	5 cut(s)	146, 161, 228, 410, 424
HhaI	GCGC	2 cut(s)	150, 414
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	2 cut(s)	148, 412
HinP1I	GCGC	2 cut(s)	148, 412
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	2 cut(s)	11, 455
Hpy166II	GTNNAC	1 cut(s)	626
Hpy188I	TCNGA	6 cut(s)	88, 94, 110, 344, 528, 609
Hpy188III	TCNNGA	1 cut(s)	484
Hpy8I	GTNNAC	1 cut(s)	626
HpyAV	CCTTC	4 cut(s)	89, 105, 545, 607
HpyCH4V	TGCA	4 cut(s)	137, 426, 500, 537
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 236, 420
HpyF3I	CTNAG	3 cut(s)	91, 177, 594
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	2 cut(s)	148, 412
KspI	CCGCGG	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	83, 130, 339, 528
LpnPI	CCDG	5 cut(s)	244, 259, 271, 286, 507
Lsp1109I	GCAGC	3 cut(s)	132, 172, 410
LweI	GCATC	2 cut(s)	258, 487
MabI	ACCWGGT	2 cut(s)	257, 272
MaeI	CTAG	2 cut(s)	194, 198
MaeIII	GTNAC	3 cut(s)	253, 353, 506
MalI	GATC	4 cut(s)	85, 132, 341, 530
MboI	GATC	4 cut(s)	83, 130, 339, 528
MboII	GAAGA	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	4 cut(s)	348, 364, 567, 582
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	5 cut(s)	44, 108, 565, 581, 603
MroXI	GAANNNNTTC	2 cut(s)	522, 560
MseI	TTAA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	2 cut(s)	163, 431
MspR9I	CCNGG	2 cut(s)	259, 274
MvaI	CCWGG	2 cut(s)	259, 274
MvnI	CGCG	2 cut(s)	412, 431
MwoI	GCNNNNNNNGC	3 cut(s)	14, 236, 420
NdeII	GATC	4 cut(s)	83, 130, 339, 528
NlaIII	CATG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	353
PdmI	GAANNNNTTC	2 cut(s)	522, 560
PkrI	GCNGC	5 cut(s)	147, 162, 229, 411, 425
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	257, 272
PspGI	CCWGG	2 cut(s)	257, 272
PspPI	GGNCC	1 cut(s)	491
RsaI	GTAC	3 cut(s)	476, 578, 627
RsaNI	GTAC	3 cut(s)	475, 577, 626
RseI	CAYNNNNRTG	1 cut(s)	290
SacII	CCGCGG	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	5 cut(s)	146, 161, 228, 410, 424
Sau3AI	GATC	4 cut(s)	83, 130, 339, 528
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	259, 274
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	8 cut(s)	36, 107, 199, 263, 275, 445, 496, 592
SexAI	ACCWGGT	2 cut(s)	257, 272
SfaNI	GCATC	2 cut(s)	258, 487
Sfr303I	CCGCGG	1 cut(s)	432
SgrBI	CCGCGG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	4 cut(s)	348, 364, 567, 582
SsiI	CCGC	6 cut(s)	22, 163, 227, 410, 429, 431
SspMI	CTAG	2 cut(s)	194, 198
StyD4I	CCNGG	2 cut(s)	257, 272
TaqI	TCGA	2 cut(s)	531, 634
TasI	AATT	4 cut(s)	348, 364, 567, 582
TatI	WGTACW	1 cut(s)	625
TauI	GCSGC	2 cut(s)	230, 412
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	3 cut(s)	145, 160, 423
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	363, 377
TspGWI	ACGGA	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	1 cut(s)	364
XmnI	GAANNNNTTC	2 cut(s)	522, 560
XspI	CTAG	2 cut(s)	194, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.