Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0021803

Physical Location & Seq

Genomic Coordinates Reverse (-)

74388100 .. 74396038

Gene Structure 7939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG520300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTGTGCTTCAAGCTATCCACCTCGTGGCGGTGCAGATCTTCATGGCGGTGCTGTTCTTCGCTGTGGTGCTGTGTTTGGTCTTCTACCGGTGGCCGGGTTTGACGATGGAAATTCTATTTCATCAAATGATATTCATTTTGCTGTTATCCGTATGCCGCGCAACTACTGCTGCACCGCGGATGTCAAAGGTGATTGCCCAACGAAGTGTGGAAACATCCCGTACCCTTTCGGGATTGGACCTGATGCAAGTTGTTACTATGACGAATGGTTTCAGATCGACTGCAACAAATCTACCGAAGGGAAGCCTTTCTTAATTGAGGCGTACCAAATTGGAGGTGCTGAAGATTTTAAAACCGATGAGATTGTTTGTGGCCCAAAGATGATACTGCTCAAAATTGCAAAAAGCCTCAAGGTTTCACCGATTGCTTTTGAGCTTGAACCAGGTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

150

Amino Acids

16.09

Weight (kDa)

4.91

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	66 - 106	6.8e-08	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0021803)

Species	Orthologous Gene IDs
rosa_samantha	Rh2BG508400 Rh2BG508600 Rh2DG520100 Rh2DG520300 Rh2DG520400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	26
AccII	CGCG	2 cut(s)	160, 179
AciI	CCGC	5 cut(s)	30, 48, 158, 177, 179
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	363
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	224, 326
AfiI	CCNNNNNNNGG	3 cut(s)	26, 29, 95
AgeI	ACCGGT	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	12, 440
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	2 cut(s)	15, 436
AluI	AGCT	2 cut(s)	15, 436
AoxI	GGCC	2 cut(s)	93, 373
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	112
AsiGI	ACCGGT	1 cut(s)	88
Asp700I	GAANNNNTTC	2 cut(s)	270, 308
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	239, 374
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	2 cut(s)	203, 411
AvaII	GGWCC	1 cut(s)	239
BauI	CACGAG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	97
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	2 cut(s)	158, 172
BlsI	GCNGC	2 cut(s)	159, 173
Bme1390I	CCNGG	2 cut(s)	97, 444
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	239, 374
BmrFI	CCNGG	2 cut(s)	97, 444
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 29, 95
Bse118I	RCCGGY	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	187, 216
BseLI	CCNNNNNNNGG	3 cut(s)	26, 29, 95
BseXI	GCAGC	1 cut(s)	158
BsgI	GTGCAG	2 cut(s)	54, 157
Bsh1236I	CGCG	2 cut(s)	160, 179
BshFI	GGCC	2 cut(s)	95, 375
BshTI	ACCGGT	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	89, 96
BslI	CCNNNNNNNGG	3 cut(s)	26, 29, 95
BsnI	GGCC	2 cut(s)	95, 375
Bsp143I	GATC	2 cut(s)	37, 276
BspACI	CCGC	5 cut(s)	30, 48, 158, 177, 179
BspANI	GGCC	2 cut(s)	95, 375
BspFNI	CGCG	2 cut(s)	160, 179
BsrFI	RCCGGY	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	37, 276
BssSI	CACGAG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	187, 216
BstFNI	CGCG	2 cut(s)	160, 179
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	2 cut(s)	40, 279
BstMBI	GATC	2 cut(s)	37, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	95, 442
BstUI	CGCG	2 cut(s)	160, 179
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	95, 375
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	187, 216
CfoI	GCGC	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	239, 374
Cfr42I	CCGCGG	1 cut(s)	180
CsiI	ACCWGGT	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	223, 325
CspAI	ACCGGT	1 cut(s)	88
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	6 cut(s)	15, 95, 307, 375, 408, 436
CviKI_1	RGCY	6 cut(s)	15, 95, 307, 375, 408, 436
CviQI	GTAC	2 cut(s)	223, 325
DpnI	GATC	2 cut(s)	39, 278
DpnII	GATC	2 cut(s)	37, 276
DraI	TTTAAA	1 cut(s)	352
DraIII	CACNNNGTG	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	442
FaeI	CATG	1 cut(s)	47
FaiI	YATR	3 cut(s)	45, 155, 261
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	158, 172
FokI	GGATG	2 cut(s)	194, 203
Fsp4HI	GCNGC	2 cut(s)	158, 172
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	158, 172
HaeIII	GGCC	2 cut(s)	95, 375
HapII	CCGG	2 cut(s)	89, 96
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HpaII	CCGG	2 cut(s)	89, 96
HphI	GGTGA	2 cut(s)	203, 411
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	293
HpyCH4V	TGCA	5 cut(s)	35, 174, 248, 285, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	47
HspAI	GCGC	1 cut(s)	160
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	37, 276
LpnPI	CCDG	4 cut(s)	102, 109, 255, 429
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	1 cut(s)	235
MabI	ACCWGGT	1 cut(s)	442
MaeIII	GTNAC	2 cut(s)	254, 446
MalI	GATC	2 cut(s)	39, 278
MboI	GATC	2 cut(s)	37, 276
MboII	GAAGA	4 cut(s)	32, 50, 74, 356
MflI	RGATCY	1 cut(s)	37
MluCI	AATT	4 cut(s)	112, 315, 330, 396
MnlI	CCTC	4 cut(s)	33, 313, 329, 419
MroXI	GAANNNNTTC	2 cut(s)	270, 308
MseI	TTAA	2 cut(s)	314, 351
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	89, 96
MspR9I	CCNGG	2 cut(s)	97, 444
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	2 cut(s)	160, 179
MwoI	GCNNNNNNNGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	2 cut(s)	37, 276
NlaIII	CATG	1 cut(s)	47
PdmI	GAANNNNTTC	2 cut(s)	270, 308
PflMI	CCANNNNNTGG	1 cut(s)	26
PinAI	ACCGGT	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	159, 173
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspPI	GGNCC	2 cut(s)	239, 374
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	2 cut(s)	224, 326
RsaNI	GTAC	2 cut(s)	223, 325
RseI	CAYNNNNRTG	1 cut(s)	48
SacII	CCGCGG	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	314, 351
SatI	GCNGC	2 cut(s)	158, 172
Sau3AI	GATC	2 cut(s)	37, 276
Sau96I	GGNCC	2 cut(s)	239, 374
ScrFI	CCNGG	2 cut(s)	97, 444
SetI	ASST	8 cut(s)	17, 25, 193, 244, 340, 417, 438, 448
SexAI	ACCWGGT	1 cut(s)	442
SfaNI	GCATC	1 cut(s)	235
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	4 cut(s)	112, 315, 330, 396
SsiI	CCGC	5 cut(s)	30, 48, 158, 177, 179
StyD4I	CCNGG	2 cut(s)	95, 442
TaqI	TCGA	1 cut(s)	279
TasI	AATT	4 cut(s)	112, 315, 330, 396
TauI	GCSGC	1 cut(s)	160
Tru1I	TTAA	2 cut(s)	314, 351
Tru9I	TTAA	2 cut(s)	314, 351
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	3 cut(s)	32, 111, 125
TspGWI	ACGGA	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	112
XmnI	GAANNNNTTC	2 cut(s)	270, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.