Rh2BG570300

pumilio homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0022656
Physical Location & Seq
Reverse (-)
78529109 .. 78533457
4349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG570300.1

Sequence Viewer

Length: 297 bp
ATGTTGCAGGTACCACATCTTTTGAAGAAAACATTACCATCCGAGTATTTTGGTGCTTGTGACTTCGAGGAAACATCCAAGCTTCATTCCAGTCCGTCAGAACCTCACCGTCGACATTGCAGAGTTCGAAGCTACCATTTCGAAGTCGAATCGGAGCTATCTCGAAGCAGTGTGCTTTGTGTTTTAAAGAAGTTCTTGGACATGCGTAATGAACGGCAAATAATGCAGCTTGTACTCAAGGTGACCAAAGAACCAGGACAGCTTGCGAGAGTTTCCTTGGACACACATGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUF

Protein Analysis

98

Amino Acids

11.36

Weight (kDa)

8.91

Isoelectric Point (pI)

60.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022656)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0161571
rosa_multiflora Rmu_sc0001035.1_g000009
rosa_samantha Rh2BG570300 Rh7AG104300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 10
AccI GTMKAC 1 cut(s) 112
AfaI GTAC 2 cut(s) 12, 234
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 5 cut(s) 82, 132, 157, 229, 262
AluI AGCT 5 cut(s) 82, 132, 157, 229, 262
ApeKI GCWGC 1 cut(s) 226
Asp718I GGTACC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 98, 253
AsuII TTCGAA 2 cut(s) 127, 141
BanI GGYRCC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 255
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 255
Bpu14I TTCGAA 2 cut(s) 127, 141
BpuEI CTTGAG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 38, 74
BseMI GCAATG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 10
Bsp119I TTCGAA 2 cut(s) 127, 141
BspLI GGNNCC 1 cut(s) 12
BspT104I TTCGAA 2 cut(s) 127, 141
BspT107I GGYRCC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 223
BstBI TTCGAA 2 cut(s) 127, 141
BstC8I GCNNGC 1 cut(s) 264
BstEII GGTNACC 1 cut(s) 241
BstF5I GGATG 2 cut(s) 38, 74
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 238
BtsCI GGATG 2 cut(s) 38, 74
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 11, 233
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 2 cut(s) 202, 287
CviJI RGCY 5 cut(s) 82, 132, 157, 229, 262
CviKI_1 RGCY 5 cut(s) 82, 132, 157, 229, 262
CviQI GTAC 2 cut(s) 11, 233
DraI TTTAAA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 276
Eco91I GGTNACC 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 205, 290
FaiI YATR 2 cut(s) 203, 288
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 2 cut(s) 201, 286
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 2 cut(s) 25, 61
Fsp4HI GCNGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 205, 290
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 1 cut(s) 149
HphI GGTGA 2 cut(s) 98, 253
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 43, 100, 154
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 7, 120, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
Hsp92II CATG 2 cut(s) 205, 290
KpnI GGTACC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 103, 240, 267
Lsp1109I GCAGC 1 cut(s) 238
MaeIII GTNAC 2 cut(s) 59, 241
MboII GAAGA 1 cut(s) 37
MnlI CCTC 2 cut(s) 61, 114
MseI TTAA 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 223
NlaIII CATG 2 cut(s) 205, 290
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 2 cut(s) 59, 241
NspI RCATGY 1 cut(s) 205
NspV TTCGAA 2 cut(s) 127, 141
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 253
PspEI GGTNACC 1 cut(s) 241
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 12
RsaI GTAC 2 cut(s) 12, 234
RsaNI GTAC 2 cut(s) 11, 233
SalI GTCGAC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 255
SetI ASST 8 cut(s) 12, 84, 106, 134, 159, 231, 243, 264
SfuI TTCGAA 2 cut(s) 127, 141
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 6 cut(s) 66, 112, 127, 141, 147, 163
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 2 cut(s) 59, 241
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 2 cut(s) 59, 241
TspDTI ATGAA 2 cut(s) 74, 225
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 175
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.