Rh2CG339300

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0025525
Physical Location & Seq
Reverse (-)
45180070 .. 45181940
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG339300.1

Sequence Viewer

Length: 279 bp
ATGCCCAAACTTGAGTCAGAAATTGGACCTGTGACCGCCCTGAGAGATTCTCAGAAGCCACCATCTCCTGGGAAAATAGGAATGGAAAAATTTGTCGAGAATTACTTCGCTCATAACCTTAATGGAAAAACACCCTTGGAGCGAATCAGAACAAAAGATGGTGAAGAGAATACTACTGACAATTCCGACGTCGTTTTTGCTGCCGTCTCAATGGCCCCAATCCCACAACGAAGAGCTCCTCCTCGCCATGGAGGAGGCCAATTACGACGAAAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

92

Amino Acids

10.16

Weight (kDa)

9.77

Isoelectric Point (pI)

60.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025525)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8169706.1_g000001 Rmu_sc0002005.1_g000012
rosa_samantha Rh2CG339300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 68
AciI CCGC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 68, 248
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 211
AoxI GGCC 2 cut(s) 213, 256
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
Asp700I GAANNNNTTC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 26, 214
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 70, 152
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 211
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 26, 214
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 34, 66
BpuEI CTTGAG 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 68, 135, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 248
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 3 cut(s) 68, 135, 247
BseLI CCNNNNNNNGG 2 cut(s) 68, 248
BseMII CTCAG 2 cut(s) 32, 65
BseRI GAGGAG 3 cut(s) 228, 231, 267
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 2 cut(s) 215, 258
BsiHKAI GWGCWC 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 68, 248
BsmAI GTCTC 1 cut(s) 211
BsmBI CGTCTC 1 cut(s) 211
BsnI GGCC 2 cut(s) 215, 258
Bsp1286I GDGCHC 1 cut(s) 238
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 1 cut(s) 36
BspANI GGCC 2 cut(s) 215, 258
BspCNI CTCAG 2 cut(s) 33, 64
BspLI GGNNCC 1 cut(s) 216
BspQI GCTCTTC 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 68, 135, 247
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 2 cut(s) 135, 247
Bst2UI CCWGG 1 cut(s) 69
Bst6I CTCTTC 2 cut(s) 159, 226
BstACI GRCGYC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 41, 51
BstDSI CCRYGG 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 215, 258
BtgI CCRYGG 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 26, 214
CviAII CATG 1 cut(s) 248
CviJI RGCY 4 cut(s) 58, 215, 236, 258
CviKI_1 RGCY 4 cut(s) 58, 215, 236, 258
DdeI CTNAG 2 cut(s) 41, 51
Eam1104I CTCTTC 2 cut(s) 159, 226
EarI CTCTTC 2 cut(s) 159, 226
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 135, 247
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 135, 247
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 135, 247
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 1 cut(s) 251
FaiI YATR 2 cut(s) 114, 249
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 201
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 215, 258
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 1 cut(s) 251
HinfI GANTC 3 cut(s) 14, 47, 144
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 4 cut(s) 19, 54, 149, 187
Hpy188III TCNNGA 1 cut(s) 97
Hpy99I CGWCG 3 cut(s) 191, 194, 270
HpyCH4IV ACGT 1 cut(s) 189
HpyF3I CTNAG 2 cut(s) 41, 51
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 251
LguI GCTCTTC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 139, 241
LpnPI CCDG 4 cut(s) 42, 53, 54, 81
Lsp1109I GCAGC 1 cut(s) 187
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 31
MboII GAAGA 2 cut(s) 176, 243
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 5 cut(s) 21, 89, 100, 181, 260
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 4 cut(s) 245, 248, 249, 252
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 247
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 2 cut(s) 47, 144
PflMI CCANNNNNTGG 1 cut(s) 68
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 26, 214
SacI GAGCTC 1 cut(s) 238
SapI GCTCTTC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 201
Sau96I GGNCC 2 cut(s) 26, 214
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 238
SetI ASST 4 cut(s) 31, 120, 192, 238
SgeI CNNG 9 cut(s) 23, 41, 52, 80, 81, 109, 148, 255, 260
SinI GGWCC 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 5 cut(s) 21, 89, 100, 181, 260
SsiI CCGC 1 cut(s) 36
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 2 cut(s) 135, 247
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 96
TasI AATT 5 cut(s) 21, 89, 100, 181, 260
TfiI GAWTC 2 cut(s) 47, 144
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 104
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.