Rh2CG424200

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0023539
Physical Location & Seq
Forward (+)
57804793 .. 57811216
6424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG424200.1

Sequence Viewer

Length: 1530 bp
ATGGCAGATGTTAGGCATAAGAAAGTTATCCATCGAAAAGGAAATTTTACTGTCCAAGAAGATCAACTCTTGTGTCATTTATATCTTTCAATTTCTCAGCATTCTATCGAAGGTGGTAATCAAAAGAAAGATAAAGTATGGGAAAGGATAACTGATTTGTGGAATAAGGATAAGGATGAACACCAGATGCGAAGCGCCAAGTCTCTTCAAAGTCGATTTTCTGATCTTAACTATTGCGTAAGCAAATTTCGTGGTTCACTTCGCCAGGTGGAAAATCGGAATCAAAGTGGTGCTTCAGAGAAAGATATTTATGCCCAGGCAAAACAACATCTACTAGATGATCCTAACTATACAAAGAAGAAGCTTCAATTTGTCATGTGTGGCCTATTCTTAAGGATGCTGAAAAATGGACCGATAATGCATTCTATCAAAGGTGGTAATCAAAAGAAAGATAAAGTATGGGAAATGATAACTGATTTGTGGAATAAGGATAAGGATGAACACCAGATGCGAAGCGCCAAGTCTCTTCAAAGTCGATTTTCTGATCTTAACTATTGCGTAAGCAAATTTCGTGGTTCACTTCGCCAGGTGGAAAATTGGAATCAAAGTGGTGCTTCAGAAAAAGATATTTATGCCCAGGCAAAACAACATCTACTAGATGATCCTAACTATACAAAGAAGAAGCTTCAATTTGTCATGTGTGGCCTATTCTTAAGGATGCTGAAAAATGGACCGATAATGGTAGAAGTTCAACTAAACCACGACAAAAAAATTACTCAAGTGAAGGATATGAATCAACCTCTCGCATATCACAATCGTCAGACTCGATGCAAAGCTTCAATCTTTGACCACGGCGGAGGACAGACTCGATCCCGCCGGCACAACAGGACCAGCATCAGGATCGTGACCTGTATTCTTCATAAGTTGGGGGAGATGGGTAATGGCAATGGTGCCATAGACAATGTAGATGATGCCGTAGATATTTCTGGCCTTGATCATTCTAACTCTCCTATGAAATCAACACTACAGATCCTGCTGATGAGTTTTTGTGTCCTTCTCATTTTGTATGTTTGCTTTTTAAAATTTCTCCACCATCTTCCCTTCTTATTTATTAGGATAAGCTCACATTCTTTGGAGGATTTTGGAACTACTTCAGCCTGGAGTATGTTGCTGCCCGAGGATGTGGAAATCACTGCTTTCAACCTACTCAAAGGTTGCAAGTATAAAGCTGCTCTATCTTGCAAGGACATATGTTATCGACTCGTTAATCTGAAGGTATGGGGACTTCGTTTCGAGTTTATTGATGGTGAAGAAGAGGTTGTGAAGGCCCGGGGATCCAAGAAAGGATGGGCATGGGGACGTGGGAAGGCCTGGGGACGTGGCGCGAGCCAGAGTGGACGTGGCCTGATTGCTCCATCTCCGCAATCAAGCTGTGCCATACAGTGTGAAGCATCTGCCAAACCAAATACAAAGGGCCCGAGAATGCCAGACGGGACTAGGGGTTTCACCATGGGAAGAGGCAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

509

Amino Acids

58.05

Weight (kDa)

9.59

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023539)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0144051 RchiOBHm_Chr5g0049061
rosa_samantha Rh2CG424200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 950
AccII CGCG 1 cut(s) 1385
AciI CCGC 3 cut(s) 855, 874, 1421
AclWI GGATC 7 cut(s) 335, 656, 864, 908, 1024, 1329, 1342
AcsI RAATTY 4 cut(s) 43, 245, 566, 1082
AcuI CTGAAG 4 cut(s) 279, 600, 1137, 1292
AfiI CCNNNNNNNGG 1 cut(s) 897
AflII CTTAAG 2 cut(s) 391, 712
AgsI TTSAA 8 cut(s) 90, 209, 368, 530, 689, 752, 840, 1201
AjiI CACGTC 3 cut(s) 1361, 1379, 1400
AjnI CCWGG 6 cut(s) 264, 315, 585, 636, 1157, 1370
AluBI AGCT 6 cut(s) 364, 685, 836, 1122, 1229, 1431
AluI AGCT 6 cut(s) 364, 685, 836, 1122, 1229, 1431
Alw26I GTCTC 2 cut(s) 207, 528
AlwI GGATC 7 cut(s) 335, 656, 864, 908, 1024, 1329, 1342
AlwNI CAGNNNCTG 1 cut(s) 1033
Ama87I CYCGRG 3 cut(s) 1175, 1329, 1477
AoxI GGCC 7 cut(s) 382, 703, 988, 1326, 1368, 1402, 1474
ApaI GGGCCC 1 cut(s) 1478
ApeKI GCWGC 2 cut(s) 1171, 1229
ApoI RAATTY 4 cut(s) 43, 245, 566, 1082
Asp700I GAANNNNTTC 1 cut(s) 1150
AspLEI GCGC 3 cut(s) 197, 518, 1385
AspS9I GGNCC 6 cut(s) 410, 731, 888, 1327, 1474, 1475
AsuC2I CCSGG 2 cut(s) 1330, 1331
AsuHPI GGTGA 2 cut(s) 1319, 1498
AvaI CYCGRG 3 cut(s) 1175, 1329, 1477
AvaII GGWCC 3 cut(s) 410, 731, 888
BaeGI GKGCMC 1 cut(s) 1478
BamHI GGATCC 1 cut(s) 1334
BanI GGYRCC 1 cut(s) 950
BanII GRGCYC 1 cut(s) 1478
BarI GAAGNNNNNNTAC 2 cut(s) 1269, 1301
BbvI GCAGC 2 cut(s) 1158, 1216
BccI CCATC 6 cut(s) 39, 928, 1101, 1298, 1341, 1423
BceAI ACGGC 2 cut(s) 868, 959
BcgI CGANNNNNNTGC 2 cut(s) 883, 917
BciT130I CCWGG 6 cut(s) 266, 317, 587, 638, 1159, 1372
BclI TGATCA 1 cut(s) 994
BcnI CCSGG 2 cut(s) 1330, 1331
BcoDI GTCTC 2 cut(s) 207, 528
BfaI CTAG 3 cut(s) 335, 656, 1497
BfmI CTRYAG 1 cut(s) 1025
BfoI RGCGCY 2 cut(s) 198, 519
BfrI CTTAAG 2 cut(s) 391, 712
BisI GCNGC 2 cut(s) 1172, 1230
BlsI GCNGC 2 cut(s) 1173, 1231
Bme1390I CCNGG 8 cut(s) 266, 317, 587, 638, 1159, 1330, 1331, 1372
Bme18I GGWCC 3 cut(s) 410, 731, 888
BmeT110I CYCGRG 3 cut(s) 1175, 1329, 1477
BmgBI CACGTC 3 cut(s) 1361, 1379, 1400
BmgT120I GGNCC 6 cut(s) 410, 731, 888, 1327, 1474, 1475
BmiI GGNNCC 3 cut(s) 952, 1336, 1476
BmrFI CCNGG 8 cut(s) 266, 317, 587, 638, 1159, 1330, 1331, 1372
BmsI GCATC 8 cut(s) 177, 387, 498, 708, 818, 903, 961, 1460
BpmI CTGGAG 1 cut(s) 1180
BpuEI CTTGAG 1 cut(s) 762
BpuMI CCSGG 2 cut(s) 1330, 1331
BsaBI GATNNNNATC 1 cut(s) 792
BsaJI CCNNGG 8 cut(s) 315, 636, 850, 1176, 1329, 1330, 1371, 1509
Bsc4I CCNNNNNNNGG 1 cut(s) 897
Bse118I RCCGGY 1 cut(s) 876
Bse3DI GCAATG 1 cut(s) 952
Bse8I GATNNNNATC 1 cut(s) 792
BseBI CCWGG 6 cut(s) 266, 317, 587, 638, 1159, 1372
BseDI CCNNGG 8 cut(s) 315, 636, 850, 1176, 1329, 1330, 1371, 1509
BseGI GGATG 6 cut(s) 181, 402, 502, 723, 1186, 1352
BseJI GATNNNNATC 1 cut(s) 792
BseLI CCNNNNNNNGG 1 cut(s) 897
BseMI GCAATG 1 cut(s) 952
BseMII CTCAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 1478
BseXI GCAGC 2 cut(s) 1158, 1216
Bsh1236I CGCG 1 cut(s) 1385
BshFI GGCC 7 cut(s) 384, 705, 990, 1328, 1370, 1404, 1476
BshNI GGYRCC 1 cut(s) 950
BsiHKCI CYCGRG 3 cut(s) 1175, 1329, 1477
BsiSI CCGG 2 cut(s) 877, 1330
BslFI GGGAC 4 cut(s) 1296, 1371, 1389, 1507
BslI CCNNNNNNNGG 1 cut(s) 897
BsmAI GTCTC 2 cut(s) 207, 528
BsmFI GGGAC 4 cut(s) 1296, 1371, 1389, 1507
BsmI GAATGC 3 cut(s) 100, 421, 1488
BsnI GGCC 7 cut(s) 384, 705, 990, 1328, 1370, 1404, 1476
BsoBI CYCGRG 3 cut(s) 1175, 1329, 1477
Bsp120I GGGCCC 1 cut(s) 1474
Bsp1286I GDGCHC 1 cut(s) 1478
Bsp19I CCATGG 1 cut(s) 1509
BspACI CCGC 3 cut(s) 855, 874, 1421
BspANI GGCC 7 cut(s) 384, 705, 990, 1328, 1370, 1404, 1476
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 1 cut(s) 1385
BspLI GGNNCC 3 cut(s) 952, 1336, 1476
BspPI GGATC 7 cut(s) 335, 656, 864, 908, 1024, 1329, 1342
BspT107I GGYRCC 1 cut(s) 950
BspTI CTTAAG 2 cut(s) 391, 712
BsrDI GCAATG 1 cut(s) 952
BsrFI RCCGGY 1 cut(s) 876
BssAI RCCGGY 1 cut(s) 876
BssECI CCNNGG 8 cut(s) 315, 636, 850, 1176, 1329, 1330, 1371, 1509
BssT1I CCWWGG 1 cut(s) 1509
Bst2UI CCWGG 6 cut(s) 266, 317, 587, 638, 1159, 1372
Bst4CI ACNGT 2 cut(s) 52, 1443
Bst6I CTCTTC 4 cut(s) 210, 531, 1308, 1510
BstAFI CTTAAG 2 cut(s) 391, 712
BstC8I GCNNGC 3 cut(s) 878, 1387, 1523
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 2 cut(s) 850, 1509
BstF5I GGATG 6 cut(s) 181, 402, 502, 723, 1186, 1352
BstFNI CGCG 1 cut(s) 1385
BstH2I RGCGCY 2 cut(s) 198, 519
BstHHI GCGC 3 cut(s) 197, 518, 1385
BstMAI GTCTC 2 cut(s) 207, 528
BstNI CCWGG 6 cut(s) 266, 317, 587, 638, 1159, 1372
BstSCI CCNGG 8 cut(s) 264, 315, 585, 636, 1157, 1328, 1329, 1370
BstSFI CTRYAG 1 cut(s) 1025
BstSLI GKGCMC 1 cut(s) 1478
BstUI CGCG 1 cut(s) 1385
BstV1I GCAGC 2 cut(s) 1158, 1216
BstX2I RGATCY 2 cut(s) 1029, 1334
BstYI RGATCY 2 cut(s) 1029, 1334
BsuRI GGCC 7 cut(s) 384, 705, 990, 1328, 1370, 1404, 1476
BtgI CCRYGG 2 cut(s) 850, 1509
BtrI CACGTC 3 cut(s) 1361, 1379, 1400
BtsCI GGATG 6 cut(s) 181, 402, 502, 723, 1186, 1352
BtsI GCAGTG 1 cut(s) 1191
BtsIMutI CAGTG 2 cut(s) 1191, 1448
Cac8I GCNNGC 3 cut(s) 878, 1387, 1523
CaiI CAGNNNCTG 1 cut(s) 1033
CfoI GCGC 3 cut(s) 197, 518, 1385
Cfr10I RCCGGY 1 cut(s) 876
Cfr13I GGNCC 6 cut(s) 410, 731, 888, 1327, 1474, 1475
Cfr9I CCCGGG 1 cut(s) 1329
CspCI CAANNNNNGTGG 4 cut(s) 232, 267, 553, 588
CviAII CATG 4 cut(s) 376, 697, 1353, 1510
DdeI CTNAG 1 cut(s) 96
DraI TTTAAA 1 cut(s) 1080
Eam1104I CTCTTC 4 cut(s) 210, 531, 1308, 1510
EarI CTCTTC 4 cut(s) 210, 531, 1308, 1510
EciI GGCGGA 1 cut(s) 870
Eco130I CCWWGG 1 cut(s) 1509
Eco147I AGGCCT 1 cut(s) 1370
Eco24I GRGCYC 1 cut(s) 1478
Eco47I GGWCC 3 cut(s) 410, 731, 888
Eco57I CTGAAG 4 cut(s) 279, 600, 1137, 1292
Eco88I CYCGRG 3 cut(s) 1175, 1329, 1477
EcoO109I RGGNCCY 1 cut(s) 1474
EcoRII CCWGG 6 cut(s) 264, 315, 585, 636, 1157, 1370
EcoT14I CCWWGG 1 cut(s) 1509
EcoT22I ATGCAT 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 1478
ErhI CCWWGG 1 cut(s) 1509
FaeI CATG 4 cut(s) 379, 700, 1356, 1513
FalI AAGNNNNNCTT 4 cut(s) 277, 309, 598, 630
FaqI GGGAC 4 cut(s) 1296, 1371, 1389, 1507
FatI CATG 4 cut(s) 375, 696, 1352, 1509
FauI CCCGC 1 cut(s) 881
FauNDI CATATG 1 cut(s) 1250
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 2 cut(s) 1172, 1230
FokI GGATG 6 cut(s) 188, 409, 509, 730, 1193, 1359
FriOI GRGCYC 1 cut(s) 1478
Fsp4HI GCNGC 2 cut(s) 1172, 1230
FspBI CTAG 3 cut(s) 335, 656, 1497
GlaI GCGC 3 cut(s) 196, 517, 1384
GluI GCNGC 2 cut(s) 1172, 1230
GsuI CTGGAG 1 cut(s) 1180
HaeII RGCGCY 2 cut(s) 198, 519
HaeIII GGCC 7 cut(s) 384, 705, 990, 1328, 1370, 1404, 1476
HapII CCGG 2 cut(s) 877, 1330
HhaI GCGC 3 cut(s) 197, 518, 1385
Hin1II CATG 4 cut(s) 379, 700, 1356, 1513
Hin6I GCGC 3 cut(s) 195, 516, 1383
HinP1I GCGC 3 cut(s) 195, 516, 1383
HindIII AAGCTT 3 cut(s) 362, 683, 834
HinfI GANTC 6 cut(s) 280, 601, 793, 823, 865, 1260
HpaII CCGG 2 cut(s) 877, 1330
HphI GGTGA 2 cut(s) 1319, 1498
Hpy166II GTNNAC 3 cut(s) 257, 578, 1397
Hpy188I TCNGA 7 cut(s) 223, 279, 298, 544, 619, 822, 1272
Hpy188III TCNNGA 2 cut(s) 898, 904
Hpy8I GTNNAC 3 cut(s) 257, 578, 1397
HpyAV CCTTC 7 cut(s) 104, 778, 1064, 1111, 1267, 1318, 1360
HpyCH4III ACNGT 2 cut(s) 52, 1443
HpyCH4IV ACGT 3 cut(s) 1360, 1378, 1399
HpyCH4V TGCA 4 cut(s) 421, 831, 1218, 1242
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 3 cut(s) 1360, 1378, 1399
Hsp92II CATG 4 cut(s) 379, 700, 1356, 1513
HspAI GCGC 3 cut(s) 195, 516, 1383
KroI GCCGGC 1 cut(s) 876
KroNI GCCGGC 1 cut(s) 878
Ksp22I TGATCA 1 cut(s) 994
LmnI GCTCC 1 cut(s) 1417
Lsp1109I GCAGC 2 cut(s) 1158, 1216
LweI GCATC 8 cut(s) 177, 387, 498, 708, 818, 903, 961, 1460
MaeI CTAG 3 cut(s) 335, 656, 1497
MaeII ACGT 3 cut(s) 1360, 1378, 1399
MaeIII GTNAC 1 cut(s) 904
MflI RGATCY 2 cut(s) 1029, 1334
MhlI GDGCHC 1 cut(s) 1478
MluCI AATT 9 cut(s) 43, 90, 245, 368, 566, 595, 689, 771, 1082
MlyI GAGTC 3 cut(s) 817, 859, 1254
MnlI CCTC 6 cut(s) 810, 851, 1129, 1171, 1309, 1511
Mph1103I ATGCAT 1 cut(s) 423
MroNI GCCGGC 1 cut(s) 876
MroXI GAANNNNTTC 1 cut(s) 1150
MseI TTAA 7 cut(s) 228, 392, 549, 713, 1079, 1266, 1528
MspCI CTTAAG 2 cut(s) 391, 712
MspI CCGG 2 cut(s) 877, 1330
MspR9I CCNGG 8 cut(s) 266, 317, 587, 638, 1159, 1330, 1331, 1372
Mva1269I GAATGC 3 cut(s) 100, 421, 1488
MvaI CCWGG 6 cut(s) 266, 317, 587, 638, 1159, 1372
MvnI CGCG 1 cut(s) 1385
NaeI GCCGGC 1 cut(s) 878
NciI CCSGG 2 cut(s) 1330, 1331
NcoI CCATGG 1 cut(s) 1509
NdeI CATATG 1 cut(s) 1250
NgoMIV GCCGGC 1 cut(s) 876
NlaIII CATG 4 cut(s) 379, 700, 1356, 1513
NlaIV GGNNCC 3 cut(s) 952, 1336, 1476
NmuCI GTSAC 1 cut(s) 904
NsiI ATGCAT 1 cut(s) 423
PceI AGGCCT 1 cut(s) 1370
PcsI WCGNNNNNNNCGW 1 cut(s) 823
PctI GAATGC 3 cut(s) 100, 421, 1488
PdiI GCCGGC 1 cut(s) 878
PdmI GAANNNNTTC 1 cut(s) 1150
PfeI GAWTC 3 cut(s) 280, 601, 793
PkrI GCNGC 2 cut(s) 1173, 1231
PleI GAGTC 3 cut(s) 817, 859, 1254
PpsI GAGTC 3 cut(s) 817, 859, 1254
Psp6I CCWGG 6 cut(s) 264, 315, 585, 636, 1157, 1370
PspGI CCWGG 6 cut(s) 264, 315, 585, 636, 1157, 1370
PspN4I GGNNCC 3 cut(s) 952, 1336, 1476
PspOMI GGGCCC 1 cut(s) 1474
PspPI GGNCC 6 cut(s) 410, 731, 888, 1327, 1474, 1475
PstNI CAGNNNCTG 1 cut(s) 1033
PsuI RGATCY 2 cut(s) 1029, 1334
SaqAI TTAA 7 cut(s) 228, 392, 549, 713, 1079, 1266, 1528
SatI GCNGC 2 cut(s) 1172, 1230
Sau96I GGNCC 6 cut(s) 410, 731, 888, 1327, 1474, 1475
SchI GAGTC 3 cut(s) 817, 859, 1254
ScrFI CCNGG 8 cut(s) 266, 317, 587, 638, 1159, 1330, 1331, 1372
SduI GDGCHC 1 cut(s) 1478
SfaNI GCATC 8 cut(s) 177, 387, 498, 708, 818, 903, 961, 1460
SfcI CTRYAG 1 cut(s) 1025
SinI GGWCC 3 cut(s) 410, 731, 888
SmaI CCCGGG 1 cut(s) 1331
SmlI CTYRAG 3 cut(s) 391, 712, 777
SmoI CTYRAG 3 cut(s) 391, 712, 777
Sse9I AATT 9 cut(s) 43, 90, 245, 368, 566, 595, 689, 771, 1082
SseBI AGGCCT 1 cut(s) 1370
SsiI CCGC 3 cut(s) 855, 874, 1421
SspMI CTAG 3 cut(s) 335, 656, 1497
StuI AGGCCT 1 cut(s) 1370
StyD4I CCNGG 8 cut(s) 264, 315, 585, 636, 1157, 1328, 1329, 1370
StyI CCWWGG 1 cut(s) 1509
TaaI ACNGT 2 cut(s) 52, 1443
TaiI ACGT 3 cut(s) 1363, 1381, 1402
TaqI TCGA 8 cut(s) 34, 108, 214, 535, 826, 868, 1258, 1293
TaqII GACCGA 2 cut(s) 427, 748
TasI AATT 9 cut(s) 43, 90, 245, 368, 566, 595, 689, 771, 1082
TfiI GAWTC 3 cut(s) 280, 601, 793
Tru1I TTAA 7 cut(s) 228, 392, 549, 713, 1079, 1266, 1528
Tru9I TTAA 7 cut(s) 228, 392, 549, 713, 1079, 1266, 1528
TscAI CASTG 2 cut(s) 1198, 1448
TseFI GTSAC 1 cut(s) 904
TseI GCWGC 2 cut(s) 1171, 1229
Tsp45I GTSAC 1 cut(s) 904
TspDTI ATGAA 5 cut(s) 192, 513, 806, 908, 1028
TspMI CCCGGG 1 cut(s) 1329
TspRI CASTG 2 cut(s) 1198, 1448
Vha464I CTTAAG 2 cut(s) 391, 712
VpaK11BI GGWCC 3 cut(s) 410, 731, 888
XapI RAATTY 4 cut(s) 43, 245, 566, 1082
XcmI CCANNNNNNNNNTGG 1 cut(s) 1397
XmaI CCCGGG 1 cut(s) 1329
XmnI GAANNNNTTC 1 cut(s) 1150
XspI CTAG 3 cut(s) 335, 656, 1497
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.