Rh2DG189300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0023986
Physical Location & Seq
Forward (+)
17026482 .. 17028776
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG189300.1

Sequence Viewer

Length: 507 bp
ATGGATGATGACTCCACAGCTCGTCTGCTTCGCTATGCTTATAGCCTCAGAGACTTGGATATTTCAAGGAGCCGGTGGGGTTGTCAGATAACCGACACCGGATTGTACCGGATCTCTTTGGCAAAGTGTATCAGCAATTTAACATCCATATCGTTATGGGGTGTTACAGGGATCACGGATAAAGGTGTTGTTCATTTGATATCCAGAGCTAATTCCTTGCAGCACCTGAATATTGGTGGCACATTCATCACAGATGAATCACTGTATGTCATTGCTAATAGCTGTCCAAATTTGAAGACTATTGTTCTATGGAGCTGCCGCCATGTAACAGAGAACGGCCTTCTTTTTCTTGTAAATAGTTGCCGCAAGCTTGAGTCCATTAATTTATGGGGAACCAGAGTTCCTGTAGAATGCTTCATTGCTTTGCTCACTATCAGTCCAGCTCTTCAGATAAAACCCAAAGGACTGACTTATAATATTGATGCTTCTACGTTGCCTGTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like LRR_6

Protein Analysis

168

Amino Acids

18.63

Weight (kDa)

8.57

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 37 - 119 3.3e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023986)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16240 FvH4_1g16240
rosa_samantha Rh2DG189300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
AciI CCGC 2 cut(s) 319, 364
AclWI GGATC 2 cut(s) 119, 179
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 1 cut(s) 107
AgsI TTSAA 2 cut(s) 66, 295
AloI GAACNNNNNNTCC 4 cut(s) 384, 385, 416, 417
AluBI AGCT 6 cut(s) 20, 209, 282, 315, 370, 443
AluI AGCT 6 cut(s) 20, 209, 282, 315, 370, 443
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 2 cut(s) 119, 179
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 2 cut(s) 220, 315
ApoI RAATTY 1 cut(s) 289
AseI ATTAAT 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 232, 302
BceAI ACGGC 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 4 cut(s) 221, 316, 319, 364
BlsI GCNGC 4 cut(s) 222, 317, 320, 365
BmiI GGNNCC 2 cut(s) 71, 394
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 392
BsaWI WCCGGW 2 cut(s) 98, 108
Bse118I RCCGGY 1 cut(s) 72
Bse3DI GCAATG 2 cut(s) 270, 417
BseGI GGATG 2 cut(s) 10, 143
BseMI GCAATG 2 cut(s) 270, 417
BseMII CTCAG 1 cut(s) 61
BseXI GCAGC 2 cut(s) 232, 302
BshFI GGCC 1 cut(s) 339
BsiSI CCGG 3 cut(s) 73, 99, 109
BsmAI GTCTC 1 cut(s) 45
BsmI GAATGC 1 cut(s) 416
BsnI GGCC 1 cut(s) 339
Bsp143I GATC 2 cut(s) 111, 171
BspACI CCGC 2 cut(s) 319, 364
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 71, 394
BspPI GGATC 2 cut(s) 119, 179
BspQI GCTCTTC 1 cut(s) 450
BsrDI GCAATG 2 cut(s) 270, 417
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssMI GATC 2 cut(s) 111, 171
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 10, 143
BstKTI GATC 2 cut(s) 114, 174
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 111, 171
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 2 cut(s) 232, 302
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 1 cut(s) 339
BtsCI GGATG 2 cut(s) 10, 143
BtsIMutI CAGTG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 368
CaiI CAGNNNCTG 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 72
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 323
CviJI RGCY 9 cut(s) 20, 45, 72, 209, 282, 315, 339, 370, 443
CviKI_1 RGCY 9 cut(s) 20, 45, 72, 209, 282, 315, 339, 370, 443
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 113, 173
DpnII GATC 2 cut(s) 111, 171
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Eco32I GATATC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 431
EcoRV GATATC 1 cut(s) 201
FaeI CATG 1 cut(s) 326
FatI CATG 1 cut(s) 322
Fnu4HI GCNGC 4 cut(s) 221, 316, 319, 364
FokI GGATG 2 cut(s) 17, 130
Fsp4HI GCNGC 4 cut(s) 221, 316, 319, 364
GluI GCNGC 4 cut(s) 221, 316, 319, 364
HaeIII GGCC 1 cut(s) 339
HapII CCGG 3 cut(s) 73, 99, 109
Hin1II CATG 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 3 cut(s) 11, 257, 374
HpaII CCGG 3 cut(s) 73, 99, 109
Hpy188I TCNGA 3 cut(s) 50, 87, 450
Hpy188III TCNNGA 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 491
Hsp92II CATG 1 cut(s) 326
Kzo9I GATC 2 cut(s) 111, 171
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 69, 312
LpnPI CCDG 9 cut(s) 86, 112, 122, 153, 217, 239, 409, 417, 453
Lsp1109I GCAGC 2 cut(s) 232, 302
LweI GCATC 1 cut(s) 472
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 2 cut(s) 163, 325
MalI GATC 2 cut(s) 113, 173
MboI GATC 2 cut(s) 111, 171
MboII GAAGA 2 cut(s) 307, 437
MflI RGATCY 1 cut(s) 111
MluCI AATT 4 cut(s) 136, 211, 289, 382
MlyI GAGTC 2 cut(s) 5, 383
MnlI CCTC 1 cut(s) 56
MseI TTAA 2 cut(s) 140, 381
MspI CCGG 3 cut(s) 73, 99, 109
Mva1269I GAATGC 1 cut(s) 416
NdeII GATC 2 cut(s) 111, 171
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 2 cut(s) 71, 394
PciSI GCTCTTC 1 cut(s) 450
PctI GAATGC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 4 cut(s) 222, 317, 320, 365
PleI GAGTC 2 cut(s) 5, 382
PpsI GAGTC 2 cut(s) 5, 382
PshBI ATTAAT 1 cut(s) 381
PsiI TTATAA 1 cut(s) 474
PspN4I GGNNCC 2 cut(s) 71, 394
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 2 cut(s) 140, 381
SatI GCNGC 4 cut(s) 221, 316, 319, 364
Sau3AI GATC 2 cut(s) 111, 171
SchI GAGTC 2 cut(s) 5, 383
SetI ASST 9 cut(s) 22, 187, 211, 228, 284, 317, 372, 445, 494
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 4 cut(s) 136, 211, 289, 382
SsiI CCGC 2 cut(s) 319, 364
SspI AATATT 2 cut(s) 232, 478
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 1 cut(s) 494
TasI AATT 4 cut(s) 136, 211, 289, 382
TauI GCSGC 2 cut(s) 321, 366
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 140, 381
Tru9I TTAA 2 cut(s) 140, 381
TscAI CASTG 1 cut(s) 267
TseI GCWGC 2 cut(s) 220, 315
TspDTI ATGAA 4 cut(s) 182, 235, 270, 406
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 267
VspI ATTAAT 1 cut(s) 381
XapI RAATTY 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.