Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010165

Physical Location & Seq

Genomic Coordinates Forward (+)

9317149 .. 9319300

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAGAGAGAGGCTGAGATTGATCGGTTGCCTCTAGACCTCTTGGCTAATATCTTTGTTCTCATCACTTCGTTCACTGATTTGGCCCAAGCAAGCGGTGTGTGTAGAAAATGGAAACAGGGGGTGAGGCAGAGTCTGGGACGCAGAGAGAGTCTGAGCTTTGCTGGTTGGAAGATGGATGATAACTCCACTGCTCGTCTGCTTCGTTATGCTTACAGCCTCAGAGACTTGGATATTTCAAGAAGCCGGTGGGGTTGTCAGATATCCGATACCGGATTGTACAGGATCTCTTTAGCAAAGTGTATCAGTAATTTAACATCCATATCGTTATGGGGGATTACAGGGATCACAGATAAAGGTGTTGTTCATTTGATCTCAAGAGCTAATTCCTTGCAGCACCTGAATATTGGTGGCACATTCATCACAGATGAGTCACTGTATGCCATTGCTAATAACTGTCCACATTTGAAGACTATTGTTCTATGGAGCTGCCGTCATGTAACAGAGAACGGCCTTCTTGTTCTTGTAAATAGTTGCCGCAAGCTCGAGTCCATCAATGTATGGGGGACCAGAGTTCCTGTAGAATGTTTCATTGCTTTGCTTACTATCAGTCCAGCTCTTCAGATAAAACCCAAAGGACTGCCTTTTAATGTTGATGCTTCTATGTTGCCTGTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like LRR_6

Protein Analysis

227

Amino Acids

25.17

Weight (kDa)

9.05

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	7 - 40	8.1e-07	F-box-like
DUF7885	PF25372	95 - 177	1.1e-09	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67140
fragaria_vesca	FvH4_1g16240 FvH4_1g16240
malus_domestica	MD02G1174700.v1.1 MD15G1285700.v1.1
prunus_persica	Prupe.7G131100_v2.0.a1 Prupe.7G131100_v2.0.a1 Prupe.7G131100_v2.0.a1 Prupe.7G131100_v2.0.a1
pyrus_communis	pycom02g14110
rosa_chinensis	RchiOBHm_Chr2g0105951
rosa_laevigata	RLG00000017472
rosa_multiflora	Rmu_sc0004367.1_g000024
rosa_roxburghii	Rroxscaffold_2G00137530 Rroxscaffold_2G00137680 Rroxscaffold_7G00190390
rosa_rugosa	Rorug02G0132600
rosa_samantha	Rh2AG182800 Rh2BG193000 Rh2CG187300
rosa_wichuraiana	Rw2G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 538
AclWI	GGATC	2 cut(s)	293, 353
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	240, 469
AluBI	AGCT	5 cut(s)	159, 383, 489, 544, 617
AluI	AGCT	5 cut(s)	159, 383, 489, 544, 617
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	293, 353
AlwNI	CAGNNNCTG	2 cut(s)	136, 400
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	2 cut(s)	84, 511
ApeKI	GCWGC	2 cut(s)	394, 489
AspS9I	GGNCC	2 cut(s)	85, 567
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	406, 476
BccI	CCATC	2 cut(s)	169, 560
BceAI	ACGGC	2 cut(s)	477, 526
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	579
BisI	GCNGC	3 cut(s)	395, 490, 538
BlsI	GCNGC	3 cut(s)	396, 491, 539
Bme18I	GGWCC	1 cut(s)	567
BmeT110I	CYCGRG	1 cut(s)	545
BmgT120I	GGNCC	2 cut(s)	85, 567
BmiI	GGNNCC	1 cut(s)	568
BmsI	GCATC	1 cut(s)	646
BpiI	GAAGAC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bse118I	RCCGGY	1 cut(s)	246
Bse3DI	GCAATG	2 cut(s)	444, 591
BseGI	GGATG	2 cut(s)	184, 317
BseMI	GCAATG	2 cut(s)	444, 591
BseMII	CTCAG	3 cut(s)	6, 146, 235
BseXI	GCAGC	2 cut(s)	406, 476
BshFI	GGCC	2 cut(s)	86, 513
BsiHKCI	CYCGRG	1 cut(s)	545
BsiSI	CCGG	2 cut(s)	247, 273
BslFI	GGGAC	2 cut(s)	153, 580
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	153, 580
BsnI	GGCC	2 cut(s)	86, 513
BsoBI	CYCGRG	1 cut(s)	545
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	22, 285, 345, 372
BspACI	CCGC	2 cut(s)	96, 538
BspANI	GGCC	2 cut(s)	86, 513
BspCNI	CTCAG	3 cut(s)	7, 147, 234
BspLI	GGNNCC	1 cut(s)	568
BspPI	GGATC	2 cut(s)	293, 353
BspQI	GCTCTTC	1 cut(s)	624
BsrDI	GCAATG	2 cut(s)	444, 591
BsrFI	RCCGGY	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	246
BssMI	GATC	4 cut(s)	22, 285, 345, 372
Bst4CI	ACNGT	2 cut(s)	438, 458
Bst6I	CTCTTC	1 cut(s)	624
BstAUI	TGTACA	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	94, 542
BstDEI	CTNAG	3 cut(s)	15, 155, 221
BstF5I	GGATG	2 cut(s)	184, 317
BstKTI	GATC	4 cut(s)	25, 288, 348, 375
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	4 cut(s)	22, 285, 345, 372
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	2 cut(s)	406, 476
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	86, 513
BtsCI	GGATG	2 cut(s)	184, 317
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	75, 189, 434
Cac8I	GCNNGC	2 cut(s)	94, 542
CaiI	CAGNNNCTG	2 cut(s)	136, 400
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	85, 567
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	1 cut(s)	497
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	3 cut(s)	15, 155, 221
DpnI	GATC	4 cut(s)	24, 287, 347, 374
DpnII	GATC	4 cut(s)	22, 285, 345, 372
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	545
EcoRV	GATATC	1 cut(s)	264
FaeI	CATG	1 cut(s)	500
FaiI	YATR	9 cut(s)	210, 323, 331, 441, 484, 498, 562, 665, 679
FaqI	GGGAC	2 cut(s)	153, 580
FatI	CATG	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	395, 490, 538
FokI	GGATG	2 cut(s)	191, 304
Fsp4HI	GCNGC	3 cut(s)	395, 490, 538
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	3 cut(s)	395, 490, 538
HaeIII	GGCC	2 cut(s)	86, 513
HapII	CCGG	2 cut(s)	247, 273
HgaI	GACGC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	500
HinfI	GANTC	4 cut(s)	133, 151, 431, 548
HpaII	CCGG	2 cut(s)	247, 273
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	75, 461
Hpy188I	TCNGA	5 cut(s)	156, 224, 261, 268, 624
Hpy188III	TCNNGA	3 cut(s)	35, 240, 378
Hpy8I	GTNNAC	2 cut(s)	75, 461
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	2 cut(s)	438, 458
HpyCH4V	TGCA	1 cut(s)	394
HpyF3I	CTNAG	3 cut(s)	15, 155, 221
Hsp92II	CATG	1 cut(s)	500
Kzo9I	GATC	4 cut(s)	22, 285, 345, 372
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	1 cut(s)	486
Lsp1109I	GCAGC	2 cut(s)	406, 476
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	432, 499
MalI	GATC	4 cut(s)	24, 287, 347, 374
MboI	GATC	4 cut(s)	22, 285, 345, 372
MboII	GAAGA	3 cut(s)	184, 481, 611
MflI	RGATCY	1 cut(s)	285
MluCI	AATT	2 cut(s)	310, 385
MlyI	GAGTC	4 cut(s)	142, 160, 440, 557
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	5 cut(s)	4, 42, 50, 120, 230
MseI	TTAA	2 cut(s)	314, 648
MspI	CCGG	2 cut(s)	247, 273
NdeII	GATC	4 cut(s)	22, 285, 345, 372
NlaIII	CATG	1 cut(s)	500
NlaIV	GGNNCC	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	432
PaeR7I	CTCGAG	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	396, 491, 539
PleI	GAGTC	4 cut(s)	141, 159, 439, 556
PpsI	GAGTC	4 cut(s)	141, 159, 439, 556
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	2 cut(s)	85, 567
PspXI	VCTCGAGB	1 cut(s)	545
PstNI	CAGNNNCTG	2 cut(s)	136, 400
PsuI	RGATCY	1 cut(s)	285
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	314, 648
SatI	GCNGC	3 cut(s)	395, 490, 538
Sau3AI	GATC	4 cut(s)	22, 285, 345, 372
Sau96I	GGNCC	2 cut(s)	85, 567
SchI	GAGTC	4 cut(s)	142, 160, 440, 557
SetI	ASST	8 cut(s)	42, 161, 361, 385, 402, 491, 546, 619
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	1 cut(s)	579
Sfr274I	CTCGAG	1 cut(s)	545
SinI	GGWCC	1 cut(s)	567
SlaI	CTCGAG	1 cut(s)	545
SmlI	CTYRAG	2 cut(s)	376, 545
SmoI	CTYRAG	2 cut(s)	376, 545
Sse9I	AATT	2 cut(s)	310, 385
SsiI	CCGC	2 cut(s)	96, 538
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	438, 458
TaqI	TCGA	1 cut(s)	546
TasI	AATT	2 cut(s)	310, 385
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	540
Tru1I	TTAA	2 cut(s)	314, 648
Tru9I	TTAA	2 cut(s)	314, 648
TscAI	CASTG	3 cut(s)	82, 196, 441
TseFI	GTSAC	1 cut(s)	432
TseI	GCWGC	2 cut(s)	394, 489
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	3 cut(s)	356, 409, 580
TspRI	CASTG	3 cut(s)	82, 196, 441
VpaK11BI	GGWCC	1 cut(s)	567
XbaI	TCTAGA	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	545
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.