Prupe.7G131100_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010165
Physical Location & Seq
Reverse (-)
15039157 .. 15042334
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G131100.3

Sequence Viewer

Length: 681 bp
ATGGTGGGTGAGGCCGAGATTGATCGGTTGCCAATAGACCTCCTGGCTCATATATTTGTTCTGATCACTTCCTTCACTGATTTAGCCCAGGCAAGCAGTGTGTGCCGGAAATGGAAACAAGGGGTGAAGCAGTCTATGGGTCGCAGAGAGAGTTTGAGCTTTTCTGGGTGGAAGATGGACGATGACTCCACTGCACGTCTGGTTCGCTATGCTTACTGCCTCAAAGAGCTCGACATTTCGAGGAGCCGTTGGGGTTGCCAGATAAGTGACAGCGGATTGTACAGAATTTCTTTGGCGAAGTGTATCAGCAGTTTAACATCCATATCCTTATGGGGCATTACAGGGATCACAGATAAAGGTGTTGGTCAGCTGATATCAAGAGCTAATTCCTTGCAGCACCTGAATATTGGTGGTACCTTTATCACAGATGAATCATTACATGCCATTGCTGATAGCTGTCCACACTTAAAGACTATTGTCTTGTGGAGCTGCCGTCATGTAACCGAGAATGGCCTTCTTGTTCTTGTAAATAGTTGCCGCAAGCTTGAGTCCATCAATTTATGGGGGACCAGAGTTCCCGTGGACTGCTTCATTGCTTTGCTTACTATCAGTCCGGCGCTAAAGATAAAACCCGTTGGACTGCTATTAAACGTTGATGCTTCGATGTTGCCGGTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like LRR_6

Protein Analysis

227

Amino Acids

24.89

Weight (kDa)

8.64

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 413
AciI CCGC 2 cut(s) 273, 538
AclI AACGTT 1 cut(s) 651
AclWI GGATC 1 cut(s) 353
AcsI RAATTY 1 cut(s) 285
AfaI GTAC 2 cut(s) 281, 415
AjiI CACGTC 1 cut(s) 197
AjnI CCWGG 2 cut(s) 42, 87
AluBI AGCT 7 cut(s) 159, 229, 370, 383, 456, 489, 544
AluI AGCT 7 cut(s) 159, 229, 370, 383, 456, 489, 544
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 400
AoxI GGCC 2 cut(s) 12, 511
ApeKI GCWGC 2 cut(s) 394, 489
ApoI RAATTY 1 cut(s) 285
Asp718I GGTACC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 1 cut(s) 567
AsuHPI GGTGA 2 cut(s) 20, 136
AvaII GGWCC 1 cut(s) 567
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 406, 476
BccI CCATC 2 cut(s) 169, 560
BceAI ACGGC 2 cut(s) 231, 477
BciT130I CCWGG 2 cut(s) 44, 89
BclI TGATCA 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 620
BisI GCNGC 3 cut(s) 395, 490, 538
BlsI GCNGC 3 cut(s) 396, 491, 539
Bme1390I CCNGG 2 cut(s) 44, 89
Bme18I GGWCC 1 cut(s) 567
BmgBI CACGTC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 567
BmiI GGNNCC 3 cut(s) 245, 415, 568
BmrFI CCNGG 2 cut(s) 44, 89
BmsI GCATC 1 cut(s) 646
BoxI GACNNNNGTC 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 566
BsaJI CCNNGG 2 cut(s) 87, 579
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 478, 508
Bse118I RCCGGY 1 cut(s) 670
Bse3DI GCAATG 2 cut(s) 444, 591
BseBI CCWGG 2 cut(s) 44, 89
BseDI CCNNGG 2 cut(s) 87, 579
BseGI GGATG 1 cut(s) 317
BseMI GCAATG 2 cut(s) 444, 591
BseRI GAGGAG 1 cut(s) 256
BseXI GCAGC 2 cut(s) 406, 476
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 2 cut(s) 14, 513
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 3 cut(s) 106, 614, 671
BslFI GGGAC 1 cut(s) 580
BsmFI GGGAC 1 cut(s) 580
BsnI GGCC 2 cut(s) 14, 513
Bsp1286I GDGCHC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 3 cut(s) 22, 63, 345
BspACI CCGC 2 cut(s) 273, 538
BspANI GGCC 2 cut(s) 14, 513
BspLI GGNNCC 3 cut(s) 245, 415, 568
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 413
BsrDI GCAATG 2 cut(s) 444, 591
BsrFI RCCGGY 1 cut(s) 670
BsrGI TGTACA 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 670
BssECI CCNNGG 2 cut(s) 87, 579
BssMI GATC 3 cut(s) 22, 63, 345
Bst2UI CCWGG 2 cut(s) 44, 89
BstAPI GCANNNNNTGC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 94, 542
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 317
BstH2I RGCGCY 1 cut(s) 620
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 3 cut(s) 25, 66, 348
BstMBI GATC 3 cut(s) 22, 63, 345
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 2 cut(s) 44, 89
BstNSI RCATGY 1 cut(s) 443
BstPAI GACNNNNGTC 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 42, 87
BstV1I GCAGC 2 cut(s) 406, 476
BsuRI GGCC 2 cut(s) 14, 513
BtgI CCRYGG 1 cut(s) 579
BtrI CACGTC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 317
BtsI GCAGTG 2 cut(s) 103, 189
BtsIMutI CAGTG 3 cut(s) 75, 103, 189
Cac8I GCNNGC 2 cut(s) 94, 542
CaiI CAGNNNCTG 1 cut(s) 400
CfoI GCGC 1 cut(s) 619
Cfr10I RCCGGY 1 cut(s) 670
Cfr13I GGNCC 1 cut(s) 567
Csp6I GTAC 2 cut(s) 280, 414
CviAII CATG 2 cut(s) 440, 497
CviQI GTAC 2 cut(s) 280, 414
DpnI GATC 3 cut(s) 24, 65, 347
DpnII GATC 3 cut(s) 22, 63, 345
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco32I GATATC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 567
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 42, 87
EcoRV GATATC 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 2 cut(s) 443, 500
FaqI GGGAC 1 cut(s) 580
FatI CATG 2 cut(s) 439, 496
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 3 cut(s) 395, 490, 538
FokI GGATG 1 cut(s) 304
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 395, 490, 538
GlaI GCGC 1 cut(s) 618
GluI GCNGC 3 cut(s) 395, 490, 538
HaeII RGCGCY 1 cut(s) 620
HaeIII GGCC 2 cut(s) 14, 513
HapII CCGG 3 cut(s) 106, 614, 671
HhaI GCGC 1 cut(s) 619
Hin1II CATG 2 cut(s) 443, 500
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 3 cut(s) 185, 431, 548
HpaII CCGG 3 cut(s) 106, 614, 671
HphI GGTGA 2 cut(s) 20, 136
Hpy166II GTNNAC 2 cut(s) 461, 583
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 378
Hpy8I GTNNAC 2 cut(s) 461, 583
HpyAV CCTTC 2 cut(s) 82, 524
HpyCH4IV ACGT 2 cut(s) 196, 651
HpyCH4V TGCA 2 cut(s) 194, 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 196, 651
Hsp92II CATG 2 cut(s) 443, 500
HspAI GCGC 1 cut(s) 617
KpnI GGTACC 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 22, 63, 345
LmnI GCTCC 2 cut(s) 243, 486
Lsp1109I GCAGC 2 cut(s) 406, 476
LweI GCATC 1 cut(s) 646
MaeII ACGT 2 cut(s) 196, 651
MaeIII GTNAC 2 cut(s) 266, 499
MalI GATC 3 cut(s) 24, 65, 347
MboI GATC 3 cut(s) 22, 63, 345
MboII GAAGA 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 3 cut(s) 285, 385, 556
MlyI GAGTC 2 cut(s) 179, 557
MmeI TCCRAC 1 cut(s) 616
MnlI CCTC 4 cut(s) 4, 50, 230, 234
MseI TTAA 3 cut(s) 314, 467, 647
MspA1I CMGCKG 2 cut(s) 273, 370
MspI CCGG 3 cut(s) 106, 614, 671
MspR9I CCNGG 2 cut(s) 44, 89
MvaI CCWGG 2 cut(s) 44, 89
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 3 cut(s) 22, 63, 345
NlaIII CATG 2 cut(s) 443, 500
NlaIV GGNNCC 3 cut(s) 245, 415, 568
NmeAIII GCCGAG 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 266
NspI RCATGY 1 cut(s) 443
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 3 cut(s) 396, 491, 539
PleI GAGTC 2 cut(s) 179, 556
PpsI GAGTC 2 cut(s) 179, 556
PshAI GACNNNNGTC 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 42, 87
PspGI CCWGG 2 cut(s) 42, 87
PspN4I GGNNCC 3 cut(s) 245, 415, 568
PspPI GGNCC 1 cut(s) 567
PstNI CAGNNNCTG 1 cut(s) 400
PvuII CAGCTG 1 cut(s) 370
RsaI GTAC 2 cut(s) 281, 415
RsaNI GTAC 2 cut(s) 280, 414
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 314, 467, 647
SatI GCNGC 3 cut(s) 395, 490, 538
Sau3AI GATC 3 cut(s) 22, 63, 345
Sau96I GGNCC 1 cut(s) 567
SchI GAGTC 2 cut(s) 179, 557
ScrFI CCNGG 2 cut(s) 44, 89
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 1 cut(s) 646
SinI GGWCC 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 3 cut(s) 285, 385, 556
SsiI CCGC 2 cut(s) 273, 538
SspI AATATT 1 cut(s) 406
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 42, 87
TaiI ACGT 2 cut(s) 199, 654
TaqI TCGA 3 cut(s) 231, 239, 662
TasI AATT 3 cut(s) 285, 385, 556
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 540
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 314, 467, 647
Tru9I TTAA 3 cut(s) 314, 467, 647
TscAI CASTG 3 cut(s) 82, 103, 196
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 2 cut(s) 394, 489
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 444, 580
TspRI CASTG 3 cut(s) 82, 103, 196
VpaK11BI GGWCC 1 cut(s) 567
XapI RAATTY 1 cut(s) 285
XceI RCATGY 1 cut(s) 443
XcmI CCANNNNNNNNNTGG 2 cut(s) 196, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.