Rh2CG187300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010165
Physical Location & Seq
Forward (+)
17494023 .. 17496317
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG187300.1

Sequence Viewer

Length: 639 bp
ATGGAGGGAGAGGCTGAGATTGATCGGTTGCCTCTAGACCTCTTGGCTAATATCTTTGTTCTCATCACCTCCTTCACTGATTTGGCACAAGCAAGCGGTGTGTGTAGAAAATGGAAACAGGGTGTGAAGCAGAGTCTGGGACGCAGAGACAGTTTGAGCTTTGCTGGTTGGAAGATGGATGATGACTCCACAGCTCGTCTGCTTCGCTATGCTTATAGCCTCAGAGACTTGGATATTTCAAGGAGCCGGTGGGGTTGTCAGATAACCGACACCGGATTGTACCGGATCTCTTTGGCAAAGTGTATCAGCAATTTAACATCCATATCGTTATGGGGTGTTACAGGGATCACGGATAAAGGTGTTGTTCATTTGATATCCAGAGCTAATTCCTTGCAGCACCTGAATATTGGTGGCACATTCATCACAGATGAATCACTGTATGTCATTGCTAATAGCTGTCCACATTTGAAGGTATGTTGTTCAGGGCGAATTAGGGCATGTTTTGAAGTGCTTTTGTTAAAAGCACTTTTACTAGGTATACTTAAGCTGGAATCATTTTTGTTAGAAACACGTACCCTTGTTAATGATACAAGTGTTTCCGAAATGCACTTTATCAGAGGACTTAGTAAGCAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like LRR_6

Protein Analysis

212

Amino Acids

23.58

Weight (kDa)

8.7

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 7 - 40 7.9e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 538
AciI CCGC 1 cut(s) 96
AclWI GGATC 2 cut(s) 293, 353
AfaI GTAC 2 cut(s) 281, 574
AflII CTTAAG 1 cut(s) 542
AflIII ACRYGT 1 cut(s) 569
AgsI TTSAA 3 cut(s) 240, 469, 506
AluBI AGCT 5 cut(s) 159, 194, 383, 456, 547
AluI AGCT 5 cut(s) 159, 194, 383, 456, 547
Alw26I GTCTC 2 cut(s) 141, 219
AlwI GGATC 2 cut(s) 293, 353
AlwNI CAGNNNCTG 2 cut(s) 136, 400
ApeKI GCWGC 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 58
BaeI ACNNNNGTAYC 2 cut(s) 579, 612
BbvI GCAGC 1 cut(s) 406
BccI CCATC 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 141, 219
BfaI CTAG 2 cut(s) 35, 533
BfrI CTTAAG 1 cut(s) 542
BisI GCNGC 1 cut(s) 395
BlsI GCNGC 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 572
BsaWI WCCGGW 2 cut(s) 272, 282
Bse118I RCCGGY 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 444
BseGI GGATG 2 cut(s) 184, 317
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 6, 235
BseXI GCAGC 1 cut(s) 406
BsiSI CCGG 3 cut(s) 247, 273, 283
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 2 cut(s) 141, 219
BsmFI GGGAC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 22, 285, 345
BspACI CCGC 1 cut(s) 96
BspCNI CTCAG 2 cut(s) 7, 234
BspLI GGNNCC 1 cut(s) 245
BspPI GGATC 2 cut(s) 293, 353
BspTI CTTAAG 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 246
BssMI GATC 3 cut(s) 22, 285, 345
BssNAI GTATAC 1 cut(s) 539
Bst1107I GTATAC 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 152, 438
BstAFI CTTAAG 1 cut(s) 542
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 3 cut(s) 15, 221, 623
BstF5I GGATG 2 cut(s) 184, 317
BstKTI GATC 3 cut(s) 25, 288, 348
BstMAI GTCTC 2 cut(s) 141, 219
BstMBI GATC 3 cut(s) 22, 285, 345
BstNSI RCATGY 1 cut(s) 501
BstV1I GCAGC 1 cut(s) 406
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BstZ17I GTATAC 1 cut(s) 539
BtsCI GGATG 2 cut(s) 184, 317
BtsIMutI CAGTG 2 cut(s) 75, 434
Cac8I GCNNGC 1 cut(s) 94
CaiI CAGNNNCTG 2 cut(s) 136, 400
Cfr10I RCCGGY 1 cut(s) 246
CseI GACGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 280, 573
CviAII CATG 1 cut(s) 498
CviJI RGCY 9 cut(s) 14, 47, 159, 194, 219, 246, 383, 456, 547
CviKI_1 RGCY 9 cut(s) 14, 47, 159, 194, 219, 246, 383, 456, 547
CviQI GTAC 2 cut(s) 280, 573
DdeI CTNAG 3 cut(s) 15, 221, 623
DpnI GATC 3 cut(s) 24, 287, 347
DpnII GATC 3 cut(s) 22, 285, 345
Eco32I GATATC 1 cut(s) 375
EcoRV GATATC 1 cut(s) 375
FaeI CATG 1 cut(s) 501
FaiI YATR 8 cut(s) 210, 216, 323, 331, 441, 475, 499, 539
FaqI GGGAC 1 cut(s) 153
FatI CATG 1 cut(s) 497
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 395
FokI GGATG 2 cut(s) 191, 304
Fsp4HI GCNGC 1 cut(s) 395
FspBI CTAG 2 cut(s) 35, 533
GluI GCNGC 1 cut(s) 395
HapII CCGG 3 cut(s) 247, 273, 283
HgaI GACGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 501
HinfI GANTC 4 cut(s) 133, 185, 431, 551
HpaII CCGG 3 cut(s) 247, 273, 283
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 461, 539
Hpy188I TCNGA 4 cut(s) 224, 261, 601, 617
Hpy188III TCNNGA 2 cut(s) 35, 378
Hpy8I GTNNAC 2 cut(s) 461, 539
HpyAV CCTTC 2 cut(s) 82, 463
HpyCH4III ACNGT 2 cut(s) 152, 438
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 2 cut(s) 394, 607
HpyF3I CTNAG 3 cut(s) 15, 221, 623
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 1 cut(s) 501
Kzo9I GATC 3 cut(s) 22, 285, 345
LmnI GCTCC 1 cut(s) 243
Lsp1109I GCAGC 1 cut(s) 406
MaeI CTAG 2 cut(s) 35, 533
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 1 cut(s) 337
MalI GATC 3 cut(s) 24, 287, 347
MboI GATC 3 cut(s) 22, 285, 345
MboII GAAGA 1 cut(s) 184
MflI RGATCY 1 cut(s) 285
MluCI AATT 3 cut(s) 310, 385, 489
MlyI GAGTC 2 cut(s) 142, 179
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 6 cut(s) 4, 42, 50, 79, 230, 611
MseI TTAA 5 cut(s) 314, 518, 543, 582, 637
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 3 cut(s) 247, 273, 283
NdeII GATC 3 cut(s) 22, 285, 345
NlaIII CATG 1 cut(s) 501
NlaIV GGNNCC 1 cut(s) 245
NspI RCATGY 1 cut(s) 501
PfeI GAWTC 2 cut(s) 431, 551
PkrI GCNGC 1 cut(s) 396
PleI GAGTC 2 cut(s) 141, 179
PpsI GAGTC 2 cut(s) 141, 179
Ppu21I YACGTR 1 cut(s) 572
PspN4I GGNNCC 1 cut(s) 245
PstNI CAGNNNCTG 2 cut(s) 136, 400
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 2 cut(s) 281, 574
RsaNI GTAC 2 cut(s) 280, 573
SaqAI TTAA 5 cut(s) 314, 518, 543, 582, 637
SatI GCNGC 1 cut(s) 395
Sau3AI GATC 3 cut(s) 22, 285, 345
SchI GAGTC 2 cut(s) 142, 179
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 3 cut(s) 310, 385, 489
SsiI CCGC 1 cut(s) 96
SspI AATATT 1 cut(s) 406
SspMI CTAG 2 cut(s) 35, 533
TaaI ACNGT 2 cut(s) 152, 438
TaiI ACGT 1 cut(s) 574
TasI AATT 3 cut(s) 310, 385, 489
TfiI GAWTC 2 cut(s) 431, 551
Tru1I TTAA 5 cut(s) 314, 518, 543, 582, 637
Tru9I TTAA 5 cut(s) 314, 518, 543, 582, 637
TscAI CASTG 2 cut(s) 82, 441
TseI GCWGC 1 cut(s) 394
TspDTI ATGAA 3 cut(s) 356, 409, 444
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 2 cut(s) 82, 441
Vha464I CTTAAG 1 cut(s) 542
XbaI TCTAGA 1 cut(s) 34
XceI RCATGY 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 538
XspI CTAG 2 cut(s) 35, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.