Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010165

Physical Location & Seq

Genomic Coordinates Forward (+)

15370669 .. 15373313

Gene Structure 2645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1174700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAGGGAGAGGCGGAGATTGATCGGTTGCCAATAGACCTCTTGGCTCATATATTTGTTCTCATCACCTCCTTCACTGATTTAGCCCAGGCAAGCGGTGTTTGCCGGAAATGGAAACAGGCGGTGAAGCAGTCTTTGGGGCGGAGGGAGAGTTTGAGCTTTGCTGGTTGGAAGATGGACGATGACTCCACCGCCCGTTTGCTTCGCTCTGCTTACAGCCTCAAGGAGCTCGACATTTCAAGGCGTCGTTGGGGTTGCCAGATAACCGACACTGGATTGGACAGAATATCTATGGCAAAGTGTATCAGCAACTTAACATCCATATCGCTATGGGGCATCACAGGGATCACAGATAAAGGTGTTGTTCAACTGATATCAAGAGCTAACTCCTTGCACCACCTGAATATCGGTGGCACATTTATCACAGATGACTCGTTATATGCCATTGCTCATAGCTGTCCGCATTTGAAGACCATCATCCTGTGGAGCTGCCGTCATGTAACCGAGAACGGCCTCTTTGTTCTAGTAAACTGTTGCCGCAAGCTTGAATCCATCAATGTATGGGGGACTAGAGTTCCTGTAGACTGCTTCATTGCTTTGCTAACTATCAGTCCGGCGCTAAAGATAAAACCCAGAGGACTGTCGTTAAATGTGGACGCTTCGATGTTGCCCATCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like LRR_6

Protein Analysis

227

Amino Acids

25.03

Weight (kDa)

8.82

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	7 - 44	3.9e-08	F-box-like
DUF7885	PF25372	95 - 176	1.1e-08	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67140
fragaria_vesca	FvH4_1g16240 FvH4_1g16240
malus_domestica	MD02G1174700.v1.1 MD15G1285700.v1.1
prunus_persica	Prupe.7G131100_v2.0.a1 Prupe.7G131100_v2.0.a1 Prupe.7G131100_v2.0.a1 Prupe.7G131100_v2.0.a1
pyrus_communis	pycom02g14110
rosa_chinensis	RchiOBHm_Chr2g0105951
rosa_laevigata	RLG00000017472
rosa_multiflora	Rmu_sc0004367.1_g000024
rosa_roxburghii	Rroxscaffold_2G00137530 Rroxscaffold_2G00137680 Rroxscaffold_7G00190390
rosa_rugosa	Rorug02G0132600
rosa_samantha	Rh2AG182800 Rh2BG193000 Rh2CG187300
rosa_wichuraiana	Rw2G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	582
AciI	CCGC	7 cut(s)	14, 96, 122, 142, 192, 461, 538
AclWI	GGATC	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	244
AgsI	TTSAA	4 cut(s)	240, 368, 469, 548
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	6 cut(s)	159, 229, 383, 456, 489, 544
AluI	AGCT	6 cut(s)	159, 229, 383, 456, 489, 544
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	1 cut(s)	511
ApeKI	GCWGC	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	619
AsuHPI	GGTGA	2 cut(s)	58, 136
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	4 cut(s)	169, 482, 560, 680
BceAI	ACGGC	2 cut(s)	477, 526
BciT130I	CCWGG	1 cut(s)	89
BfaI	CTAG	2 cut(s)	524, 570
BfmI	CTRYAG	1 cut(s)	579
BfoI	RGCGCY	1 cut(s)	620
BisI	GCNGC	2 cut(s)	490, 538
BlsI	GCNGC	2 cut(s)	491, 539
Bme1390I	CCNGG	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	6 cut(s)	136, 166, 170, 200, 478, 508
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	2 cut(s)	444, 591
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	317, 477
BseMI	GCAATG	2 cut(s)	444, 591
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	476
BshFI	GGCC	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	106, 614
BslFI	GGGAC	1 cut(s)	580
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	1 cut(s)	513
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	22, 345
BspACI	CCGC	7 cut(s)	14, 96, 122, 142, 192, 461, 538
BspANI	GGCC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	353
BsrDI	GCAATG	2 cut(s)	444, 591
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	22, 345
BssNI	GRCGYC	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	533, 642
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	94, 542
BstF5I	GGATG	2 cut(s)	317, 477
BstH2I	RGCGCY	1 cut(s)	620
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	2 cut(s)	25, 348
BstMBI	GATC	2 cut(s)	22, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	476
BstV2I	GAAGAC	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	513
BtgZI	GCGATG	1 cut(s)	658
BtsCI	GGATG	2 cut(s)	317, 477
BtsIMutI	CAGTG	2 cut(s)	75, 270
Cac8I	GCNNGC	2 cut(s)	94, 542
CfoI	GCGC	1 cut(s)	619
CseI	GACGC	2 cut(s)	233, 665
CviAII	CATG	1 cut(s)	497
DpnI	GATC	2 cut(s)	24, 347
DpnII	GATC	2 cut(s)	22, 345
EciI	GGCGGA	2 cut(s)	29, 157
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	87
EcoRV	GATATC	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	1 cut(s)	500
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	2 cut(s)	490, 538
FokI	GGATG	2 cut(s)	304, 464
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	490, 538
FspBI	CTAG	2 cut(s)	524, 570
GlaI	GCGC	1 cut(s)	618
GluI	GCNGC	2 cut(s)	490, 538
HaeII	RGCGCY	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	513
HapII	CCGG	2 cut(s)	106, 614
HgaI	GACGC	2 cut(s)	233, 665
HhaI	GCGC	1 cut(s)	619
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	500
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	3 cut(s)	185, 431, 548
HpaII	CCGG	2 cut(s)	106, 614
HphI	GGTGA	2 cut(s)	58, 136
Hpy166II	GTNNAC	3 cut(s)	529, 583, 655
Hpy188III	TCNNGA	1 cut(s)	378
Hpy8I	GTNNAC	3 cut(s)	529, 583, 655
Hpy99I	CGWCG	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	533, 642
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	500
HspAI	GCGC	1 cut(s)	617
Kzo9I	GATC	2 cut(s)	22, 345
LmnI	GCTCC	2 cut(s)	226, 486
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	2 cut(s)	524, 570
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	2 cut(s)	24, 347
MboI	GATC	2 cut(s)	22, 345
MboII	GAAGA	2 cut(s)	184, 481
MhlI	GDGCHC	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	179, 425
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	7 cut(s)	4, 50, 79, 138, 230, 524, 629
MseI	TTAA	2 cut(s)	314, 647
MspI	CCGG	2 cut(s)	106, 614
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	2 cut(s)	22, 345
NlaIII	CATG	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	491, 539
PleI	GAGTC	2 cut(s)	179, 425
PpsI	GAGTC	2 cut(s)	179, 425
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	314, 647
SatI	GCNGC	2 cut(s)	490, 538
Sau3AI	GATC	2 cut(s)	22, 345
SchI	GAGTC	2 cut(s)	179, 425
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SsiI	CCGC	7 cut(s)	14, 96, 122, 142, 192, 461, 538
SspMI	CTAG	2 cut(s)	524, 570
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	533, 642
TaqI	TCGA	2 cut(s)	231, 662
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	314, 647
Tru9I	TTAA	2 cut(s)	314, 647
TscAI	CASTG	2 cut(s)	82, 277
TseI	GCWGC	1 cut(s)	489
TspDTI	ATGAA	1 cut(s)	580
TspRI	CASTG	2 cut(s)	82, 277
XmiI	GTMKAC	1 cut(s)	582
XspI	CTAG	2 cut(s)	524, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.