Rroxscaffold_2G00137530

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010165
Physical Location & Seq
Reverse (-)
75347916 .. 75349772
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137530.1

Sequence Viewer

Length: 681 bp
ATGGAGGGAGAGGCTGAGATTGATCGGTTGCCTCTAGACCTCTTGGCTAGTATCTTTGTTCTCATCACTTCCTTCACTGATTTGGCACAAGCAAGCGGCGTGTGTAGAAAATGGAAACAGGGGGTGAAGCAGAGTCTGGGACGCAGAGACAGTTTGAGCTTTGCTGGTTGGAAGATGGATGATGACTCCACAGCTCGTCTGCTTCGCTATGCTTACAGCCTCAGAGACTTGGATATTTCCAGGAGCCGGTGGGGTTGTCAGATAACCGACACCGGATTGTACCGGATCTCGTTGGCAAAGTGTATCAGCAATTTAACATCCATATCGTTATGGGGTGTTACAGGGATCACGGATAAAGGTGTTGTTCATTTGATATCCAGAGCTAATTCCTTGCAGCACCTGAATATTGGTGGCACATTCATCACAGATGAATCACTGTATATCATTGCTAATAGCTGTCCACATTTGAAGACTATTGTTCTATGGAGCTGCCGCCATGTAACAGAGAACGGCCTTCTTTTTCTTGTAAATAGTTGCCGCAAGCTTGAGTCCATCAATTTATGGGGAACCAGAGTTCCTGTAGAATGCTTCATTGCTTTGCTTACTATCAGTCCAGCTCTTCAGATAAAACCCAAAGGACTGACTTATAATGTTGATGCTTCTATGTTGCCTGTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like LRR_6

Protein Analysis

226

Amino Acids

25.1

Weight (kDa)

8.69

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 7 - 40 1.1e-06 F-box-like
DUF7885 PF25372 95 - 177 9.2e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AciI CCGC 3 cut(s) 96, 493, 538
AclWI GGATC 2 cut(s) 293, 353
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 246
AgsI TTSAA 1 cut(s) 469
AjnI CCWGG 1 cut(s) 239
AloI GAACNNNNNNTCC 4 cut(s) 558, 559, 590, 591
AluBI AGCT 7 cut(s) 159, 194, 383, 456, 489, 544, 617
AluI AGCT 7 cut(s) 159, 194, 383, 456, 489, 544, 617
Alw26I GTCTC 2 cut(s) 141, 219
AlwI GGATC 2 cut(s) 293, 353
AlwNI CAGNNNCTG 2 cut(s) 136, 400
AoxI GGCC 1 cut(s) 511
ApeKI GCWGC 2 cut(s) 394, 489
AsuHPI GGTGA 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 406, 476
BccI CCATC 2 cut(s) 169, 560
BceAI ACGGC 1 cut(s) 526
BciT130I CCWGG 1 cut(s) 241
BcoDI GTCTC 2 cut(s) 141, 219
BfaI CTAG 2 cut(s) 35, 48
BfmI CTRYAG 1 cut(s) 579
BisI GCNGC 5 cut(s) 97, 395, 490, 493, 538
BlsI GCNGC 5 cut(s) 98, 396, 491, 494, 539
Bme1390I CCNGG 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 245, 568
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 566
BsaWI WCCGGW 2 cut(s) 272, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse118I RCCGGY 1 cut(s) 246
Bse3DI GCAATG 2 cut(s) 444, 591
BseBI CCWGG 1 cut(s) 241
BseGI GGATG 2 cut(s) 184, 317
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMI GCAATG 2 cut(s) 444, 591
BseMII CTCAG 2 cut(s) 6, 235
BseXI GCAGC 2 cut(s) 406, 476
BshFI GGCC 1 cut(s) 513
BsiSI CCGG 3 cut(s) 247, 273, 283
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 2 cut(s) 141, 219
BsmFI GGGAC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 1 cut(s) 513
Bsp143I GATC 3 cut(s) 22, 285, 345
BspACI CCGC 3 cut(s) 96, 493, 538
BspANI GGCC 1 cut(s) 513
BspCNI CTCAG 2 cut(s) 7, 234
BspLI GGNNCC 2 cut(s) 245, 568
BspPI GGATC 2 cut(s) 293, 353
BspQI GCTCTTC 1 cut(s) 624
BsrDI GCAATG 2 cut(s) 444, 591
BsrFI RCCGGY 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 246
BssMI GATC 3 cut(s) 22, 285, 345
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 2 cut(s) 152, 438
Bst6I CTCTTC 1 cut(s) 624
BstC8I GCNNGC 2 cut(s) 94, 542
BstDEI CTNAG 2 cut(s) 15, 221
BstF5I GGATG 2 cut(s) 184, 317
BstKTI GATC 3 cut(s) 25, 288, 348
BstMAI GTCTC 2 cut(s) 141, 219
BstMBI GATC 3 cut(s) 22, 285, 345
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 406, 476
BstV2I GAAGAC 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 1 cut(s) 513
BtsCI GGATG 2 cut(s) 184, 317
BtsIMutI CAGTG 2 cut(s) 75, 434
Cac8I GCNNGC 2 cut(s) 94, 542
CaiI CAGNNNCTG 2 cut(s) 136, 400
Cfr10I RCCGGY 1 cut(s) 246
CseI GACGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 280
CviAII CATG 1 cut(s) 497
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 15, 221
DpnI GATC 3 cut(s) 24, 287, 347
DpnII GATC 3 cut(s) 22, 285, 345
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Eco32I GATATC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 605
EcoRII CCWGG 1 cut(s) 239
EcoRV GATATC 1 cut(s) 375
FaeI CATG 1 cut(s) 500
FaqI GGGAC 1 cut(s) 153
FatI CATG 1 cut(s) 496
Fnu4HI GCNGC 5 cut(s) 97, 395, 490, 493, 538
FokI GGATG 2 cut(s) 191, 304
Fsp4HI GCNGC 5 cut(s) 97, 395, 490, 493, 538
FspBI CTAG 2 cut(s) 35, 48
GluI GCNGC 5 cut(s) 97, 395, 490, 493, 538
HaeIII GGCC 1 cut(s) 513
HapII CCGG 3 cut(s) 247, 273, 283
HgaI GACGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 500
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 4 cut(s) 133, 185, 431, 548
HpaII CCGG 3 cut(s) 247, 273, 283
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 3 cut(s) 224, 261, 624
Hpy188III TCNNGA 2 cut(s) 35, 378
Hpy8I GTNNAC 1 cut(s) 461
HpyAV CCTTC 2 cut(s) 82, 524
HpyCH4III ACNGT 2 cut(s) 152, 438
HpyCH4V TGCA 1 cut(s) 394
HpyF3I CTNAG 2 cut(s) 15, 221
Hsp92II CATG 1 cut(s) 500
Kzo9I GATC 3 cut(s) 22, 285, 345
LguI GCTCTTC 1 cut(s) 624
LmnI GCTCC 2 cut(s) 243, 486
Lsp1109I GCAGC 2 cut(s) 406, 476
LweI GCATC 1 cut(s) 646
MaeI CTAG 2 cut(s) 35, 48
MaeIII GTNAC 2 cut(s) 337, 499
MalI GATC 3 cut(s) 24, 287, 347
MboI GATC 3 cut(s) 22, 285, 345
MboII GAAGA 3 cut(s) 184, 481, 611
MflI RGATCY 1 cut(s) 285
MluCI AATT 3 cut(s) 310, 385, 556
MlyI GAGTC 3 cut(s) 142, 179, 557
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 4 cut(s) 4, 42, 50, 230
MseI TTAA 1 cut(s) 314
MspI CCGG 3 cut(s) 247, 273, 283
MspR9I CCNGG 1 cut(s) 241
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 1 cut(s) 241
NdeII GATC 3 cut(s) 22, 285, 345
NlaIII CATG 1 cut(s) 500
NlaIV GGNNCC 2 cut(s) 245, 568
PciSI GCTCTTC 1 cut(s) 624
PctI GAATGC 1 cut(s) 590
PfeI GAWTC 1 cut(s) 431
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 5 cut(s) 98, 396, 491, 494, 539
PleI GAGTC 3 cut(s) 141, 179, 556
PpsI GAGTC 3 cut(s) 141, 179, 556
PsiI TTATAA 1 cut(s) 648
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 245, 568
PstNI CAGNNNCTG 2 cut(s) 136, 400
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 5 cut(s) 97, 395, 490, 493, 538
Sau3AI GATC 3 cut(s) 22, 285, 345
SchI GAGTC 3 cut(s) 142, 179, 557
ScrFI CCNGG 1 cut(s) 241
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 1 cut(s) 579
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 3 cut(s) 310, 385, 556
SsiI CCGC 3 cut(s) 96, 493, 538
SspI AATATT 1 cut(s) 406
SspMI CTAG 2 cut(s) 35, 48
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 2 cut(s) 152, 438
TasI AATT 3 cut(s) 310, 385, 556
TauI GCSGC 3 cut(s) 99, 495, 540
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 2 cut(s) 82, 441
TseI GCWGC 2 cut(s) 394, 489
TspDTI ATGAA 4 cut(s) 356, 409, 444, 580
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 2 cut(s) 82, 441
XbaI TCTAGA 1 cut(s) 34
XspI CTAG 2 cut(s) 35, 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.