AT5G67140

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010165
Physical Location & Seq
Reverse (-)
26793880 .. 26795369
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67140.1

Sequence Viewer

Length: 687 bp
ATGGATGAAGAAGCAGCGATTGATCGTTTACCATTAGACCTTCTTGCATATATATTTTCGTTGGCTACTTCTTTCACCGTTTTGGCCCAGGCAAGTGGTGTTTGCAAGAAATGGAGAAAAGCTGTAAATCAATCGATGGCGAGAAGAGAAACTCTGAGCTTTGCTGGTTGGAAAATGGACGATGATTCCACTTCTCGTCTCGTTCATCTTGCTTTCAACCTCAAAGAACTCGACATATCTCGAAGCAGATGGGGTTGTCATATAACTGATAATGGTCTTTACCAAATAGCTTCTGCAAGATGTGTATCCAATTTAAACTCTGTCTCTTTATGGGGCATGACCGCCATTACTGATTCTGGTGTTGTTCAACTGATTTCAAGAACTTCCTCACTGCAACACCTAAACATAGGAGGAACATTTATAACCGATGAGTCTCTTTTCGCAATTGCAGAACGCTGCCATCAGCTTAAGACAATCGGAATGTGGTGTTGCCGTCATGTGACAGAGAGAGGCCTTCTTGTTCTTGTAAACAAATGCAGAAAACTCGAATCCATCAACTTATGGGGAACTAGAGTTCCTGTAGATTGCTTCATTGCTTTACTTACCATCAGTCCTGCTCTTCAGATCAAACCCATGGAATTGCTTCTCAATGCTCAGAATCCACCACCGTTGCTGCATGCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like LRR_6

Protein Analysis

228

Amino Acids

25.38

Weight (kDa)

8.45

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 7 - 44 6e-07 F-box-like
DUF7885 PF25372 101 - 178 1.1e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AciI CCGC 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 605
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 3 cut(s) 217, 368, 378
AjnI CCWGG 1 cut(s) 87
AloI GAACNNNNNNTCC 4 cut(s) 558, 559, 590, 591
AluBI AGCT 4 cut(s) 122, 159, 290, 466
AluI AGCT 4 cut(s) 122, 159, 290, 466
Alw26I GTCTC 3 cut(s) 203, 328, 438
AoxI GGCC 2 cut(s) 84, 511
ApeKI GCWGC 3 cut(s) 14, 456, 673
Asp700I GAANNNNTTC 1 cut(s) 642
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 67
BbvI GCAGC 3 cut(s) 26, 443, 660
BccI CCATC 5 cut(s) 130, 243, 468, 560, 614
BceAI ACGGC 1 cut(s) 477
BcgI CGANNNNNNTGC 2 cut(s) 526, 560
BciT130I CCWGG 1 cut(s) 89
BciVI GTATCC 1 cut(s) 316
BcoDI GTCTC 3 cut(s) 203, 328, 438
BfaI CTAG 2 cut(s) 570, 685
BfmI CTRYAG 1 cut(s) 579
BfrI CTTAAG 1 cut(s) 467
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 3 cut(s) 15, 457, 674
BlsI GCNGC 3 cut(s) 16, 458, 675
Bme1390I CCNGG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 87, 633
Bse3DI GCAATG 1 cut(s) 591
Bse8I GATNNNNATC 1 cut(s) 304
BseBI CCWGG 1 cut(s) 89
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 87, 633
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 304
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 2 cut(s) 146, 668
BseXI GCAGC 3 cut(s) 26, 443, 660
BshFI GGCC 2 cut(s) 86, 513
BshVI ATCGAT 1 cut(s) 134
BsmAI GTCTC 3 cut(s) 203, 328, 438
BsmBI CGTCTC 1 cut(s) 203
BsnI GGCC 2 cut(s) 86, 513
Bsp143I GATC 2 cut(s) 22, 624
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 1 cut(s) 342
BspANI GGCC 2 cut(s) 86, 513
BspCNI CTCAG 2 cut(s) 147, 667
BspDI ATCGAT 1 cut(s) 134
BspQI GCTCTTC 1 cut(s) 624
BspTI CTTAAG 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 591
BssECI CCNNGG 2 cut(s) 87, 633
BssMI GATC 2 cut(s) 22, 624
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 79, 669
Bst6I CTCTTC 2 cut(s) 139, 624
BstAFI CTTAAG 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 2 cut(s) 155, 654
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 25, 627
BstMAI GTCTC 3 cut(s) 203, 328, 438
BstMBI GATC 2 cut(s) 22, 624
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 3 cut(s) 26, 443, 660
BstXI CCANNNNNNTGG 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 134
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 2 cut(s) 86, 513
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 633
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 389
Cac8I GCNNGC 1 cut(s) 678
Cfr13I GGNCC 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 134
CspCI CAANNNNNGTGG 2 cut(s) 651, 686
CviAII CATG 4 cut(s) 337, 497, 634, 677
CviJI RGCY 7 cut(s) 65, 86, 122, 159, 290, 466, 513
CviKI_1 RGCY 7 cut(s) 65, 86, 122, 159, 290, 466, 513
DdeI CTNAG 2 cut(s) 155, 654
DpnI GATC 2 cut(s) 24, 626
DpnII GATC 2 cut(s) 22, 624
DraI TTTAAA 1 cut(s) 315
Eam1104I CTCTTC 2 cut(s) 139, 624
EarI CTCTTC 2 cut(s) 139, 624
Eco130I CCWWGG 1 cut(s) 633
Eco147I AGGCCT 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 605
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 633
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 4 cut(s) 340, 500, 637, 680
FatI CATG 4 cut(s) 336, 496, 633, 676
Fnu4HI GCNGC 3 cut(s) 15, 457, 674
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 15, 457, 674
FspBI CTAG 2 cut(s) 570, 685
GluI GCNGC 3 cut(s) 15, 457, 674
HaeIII GGCC 2 cut(s) 86, 513
Hin1II CATG 4 cut(s) 340, 500, 637, 680
HinfI GANTC 5 cut(s) 185, 353, 431, 548, 658
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 29, 529
Hpy188I TCNGA 4 cut(s) 156, 479, 624, 657
Hpy188III TCNNGA 2 cut(s) 240, 378
Hpy8I GTNNAC 2 cut(s) 29, 529
HpyAV CCTTC 2 cut(s) 50, 524
HpyCH4III ACNGT 2 cut(s) 79, 669
HpyCH4V TGCA 7 cut(s) 47, 105, 296, 394, 449, 537, 676
HpyF3I CTNAG 2 cut(s) 155, 654
Hsp92II CATG 4 cut(s) 340, 500, 637, 680
Kzo9I GATC 2 cut(s) 22, 624
LguI GCTCTTC 1 cut(s) 624
LpnPI CCDG 6 cut(s) 74, 101, 150, 342, 591, 627
Lsp1109I GCAGC 3 cut(s) 26, 443, 660
MaeI CTAG 2 cut(s) 570, 685
MaeIII GTNAC 1 cut(s) 499
MalI GATC 2 cut(s) 24, 626
MboI GATC 2 cut(s) 22, 624
MboII GAAGA 3 cut(s) 20, 156, 611
MfeI CAATTG 1 cut(s) 444
MluCI AATT 3 cut(s) 310, 444, 638
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 4 cut(s) 230, 397, 404, 503
MroXI GAANNNNTTC 1 cut(s) 642
MseI TTAA 2 cut(s) 314, 468
MspCI CTTAAG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 89
NcoI CCATGG 1 cut(s) 633
NdeII GATC 2 cut(s) 22, 624
NlaIII CATG 4 cut(s) 340, 500, 637, 680
NmuCI GTSAC 1 cut(s) 499
NspI RCATGY 1 cut(s) 680
PaeI GCATGC 1 cut(s) 680
PceI AGGCCT 1 cut(s) 513
PciSI GCTCTTC 1 cut(s) 624
PdmI GAANNNNTTC 1 cut(s) 642
PfeI GAWTC 4 cut(s) 185, 353, 548, 658
PkrI GCNGC 3 cut(s) 16, 458, 675
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PsiI TTATAA 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspPI GGNCC 1 cut(s) 85
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 2 cut(s) 314, 468
SatI GCNGC 3 cut(s) 15, 457, 674
Sau3AI GATC 2 cut(s) 22, 624
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 89
SetI ASST 7 cut(s) 42, 124, 161, 222, 292, 402, 468
SfcI CTRYAG 1 cut(s) 579
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
SphI GCATGC 1 cut(s) 680
Sse9I AATT 3 cut(s) 310, 444, 638
SseBI AGGCCT 1 cut(s) 513
SsiI CCGC 1 cut(s) 342
SspMI CTAG 2 cut(s) 570, 685
StuI AGGCCT 1 cut(s) 513
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 2 cut(s) 79, 669
TaqI TCGA 4 cut(s) 134, 231, 241, 546
TasI AATT 3 cut(s) 310, 444, 638
TfiI GAWTC 4 cut(s) 185, 353, 548, 658
Tru1I TTAA 2 cut(s) 314, 468
Tru9I TTAA 2 cut(s) 314, 468
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 3 cut(s) 14, 456, 673
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 3 cut(s) 21, 194, 580
TspRI CASTG 1 cut(s) 396
Vha464I CTTAAG 1 cut(s) 467
XceI RCATGY 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 642
XspI CTAG 2 cut(s) 570, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.