Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010165

Physical Location & Seq

Genomic Coordinates Forward (+)

26059397 .. 26067266

Gene Structure 7870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1285700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAGGGAGAGGCAGAGATTGATCGGTTGCCAATTGACCTCTTGGCGCATATATTTGTTCTCATAACTTCCTTCACTGATTTGGCCCAGGCAAGCGGTGTTTGCCGGAAATGGAAACAGGCCGTGAAGCAGTCTTTGGGGCGGAGGGAGTGTTTGAGCTTTGCAGGTTGGAAGATGGATGATGACTCCACGTCTCGTTTGCTTCGCTCTGCTTACAGCCTTAAAGAGCTCGACATTTCAAGGAGTCGTTGGGGTTGCCAGATAACCGACACTGGATTGTGCAGAATATCTATGGCAAAGTGTATCAGCAACTTAACATCAATATCGCTATGGGGCATCACAGGGATCACAGATAAAGGTGTTGTGCAACTGATATCAAGAGCTAATTCCTTGCACCACCTGAATATCGGTGGCACATTTATCACAGATGACTCATTATATGCCATTGCTCATAGCTGTCCACATTTGAAGACTATCATCCTGTGGAGCTGCCGTCATGTAACCGAGACCGGCCTCTTTGTTCTTGTAAAATATTGCCGCAAGCTTGAATCCATCAATTTGTGGGGGACGAGAGTTCCTGTAGACTGCTTCCTTGCCTTGATCACTATCAGTCCAGCTCTAAAGATAAAACCGCAAGGACTGTCGTTAAATGTGGACGCTTCTATGTTGCCCATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like LRR_6

Protein Analysis

227

Amino Acids

25.06

Weight (kDa)

8.75

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	7 - 47	2.4e-08	F-box-like
DUF7885	PF25372	95 - 177	3.6e-08	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67140
fragaria_vesca	FvH4_1g16240 FvH4_1g16240
malus_domestica	MD02G1174700.v1.1 MD15G1285700.v1.1
prunus_persica	Prupe.7G131100_v2.0.a1 Prupe.7G131100_v2.0.a1 Prupe.7G131100_v2.0.a1 Prupe.7G131100_v2.0.a1
pyrus_communis	pycom02g14110
rosa_chinensis	RchiOBHm_Chr2g0105951
rosa_laevigata	RLG00000017472
rosa_multiflora	Rmu_sc0004367.1_g000024
rosa_roxburghii	Rroxscaffold_2G00137530 Rroxscaffold_2G00137680 Rroxscaffold_7G00190390
rosa_rugosa	Rorug02G0132600
rosa_samantha	Rh2AG182800 Rh2BG193000 Rh2CG187300
rosa_wichuraiana	Rw2G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	582
AciI	CCGC	4 cut(s)	96, 142, 538, 632
AclWI	GGATC	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	240, 469, 548
AhdI	GACNNNNNGTC	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	192
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	7 cut(s)	159, 229, 383, 456, 489, 544, 617
AluI	AGCT	7 cut(s)	159, 229, 383, 456, 489, 544, 617
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	198, 500
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	3 cut(s)	84, 120, 511
ApeKI	GCWGC	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	2 cut(s)	169, 560
BceAI	ACGGC	2 cut(s)	107, 477
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	600
BcoDI	GTCTC	2 cut(s)	198, 500
BfmI	CTRYAG	1 cut(s)	579
BfuAI	ACCTGC	1 cut(s)	155
BisI	GCNGC	2 cut(s)	490, 538
BlsI	GCNGC	2 cut(s)	491, 539
Bme1390I	CCNGG	1 cut(s)	89
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	4 cut(s)	136, 166, 478, 508
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	184, 477
BseJI	GATNNNNATC	1 cut(s)	605
BseMI	GCAATG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	476
BsgI	GTGCAG	1 cut(s)	301
BshFI	GGCC	3 cut(s)	86, 122, 513
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	106, 510
BslFI	GGGAC	1 cut(s)	580
BsmAI	GTCTC	2 cut(s)	198, 500
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	86, 122, 513
Bso31I	GGTCTC	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	22, 345, 600
BspACI	CCGC	4 cut(s)	96, 142, 538, 632
BspANI	GGCC	3 cut(s)	86, 122, 513
BspMI	ACCTGC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	22, 345, 600
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	642
BstC8I	GCNNGC	2 cut(s)	94, 542
BstF5I	GGATG	2 cut(s)	184, 477
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	3 cut(s)	25, 348, 603
BstMAI	GTCTC	2 cut(s)	198, 500
BstMBI	GATC	3 cut(s)	22, 345, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	476
BstV2I	GAAGAC	1 cut(s)	476
BsuRI	GGCC	3 cut(s)	86, 122, 513
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	184, 477
BtsIMutI	CAGTG	2 cut(s)	75, 270
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	2 cut(s)	94, 542
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	665
CviAII	CATG	1 cut(s)	497
DpnI	GATC	3 cut(s)	24, 347, 602
DpnII	GATC	3 cut(s)	22, 345, 600
DriI	GACNNNNNGTC	1 cut(s)	190
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	87
EcoRV	GATATC	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	500
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	2 cut(s)	490, 538
FokI	GGATG	2 cut(s)	191, 464
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	490, 538
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	490, 538
HaeIII	GGCC	3 cut(s)	86, 122, 513
HapII	CCGG	2 cut(s)	106, 510
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	500
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	4 cut(s)	185, 244, 431, 548
HpaII	CCGG	2 cut(s)	106, 510
Hpy166II	GTNNAC	3 cut(s)	461, 583, 655
Hpy188III	TCNNGA	1 cut(s)	378
Hpy8I	GTNNAC	3 cut(s)	461, 583, 655
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	164, 282, 367, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	500
HspAI	GCGC	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	3 cut(s)	22, 345, 600
LmnI	GCTCC	1 cut(s)	486
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	1 cut(s)	345
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	3 cut(s)	24, 347, 602
MboI	GATC	3 cut(s)	22, 345, 600
MboII	GAAGA	2 cut(s)	184, 481
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	3 cut(s)	33, 385, 556
MlyI	GAGTC	3 cut(s)	179, 253, 425
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	4 cut(s)	4, 50, 138, 524
MseI	TTAA	3 cut(s)	222, 314, 647
MspI	CCGG	2 cut(s)	106, 510
MspR9I	CCNGG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	3 cut(s)	22, 345, 600
NlaIII	CATG	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	491, 539
PleI	GAGTC	3 cut(s)	179, 252, 425
PpsI	GAGTC	3 cut(s)	179, 252, 425
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	222, 314, 647
SatI	GCNGC	2 cut(s)	490, 538
Sau3AI	GATC	3 cut(s)	22, 345, 600
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	3 cut(s)	179, 253, 425
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	579
Sse9I	AATT	3 cut(s)	33, 385, 556
SsiI	CCGC	4 cut(s)	96, 142, 538, 632
SspI	AATATT	1 cut(s)	533
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	642
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	231
TasI	AATT	3 cut(s)	33, 385, 556
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	3 cut(s)	222, 314, 647
Tru9I	TTAA	3 cut(s)	222, 314, 647
TscAI	CASTG	2 cut(s)	82, 277
TseI	GCWGC	1 cut(s)	489
TspRI	CASTG	2 cut(s)	82, 277
XmiI	GTMKAC	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.