Rh2DG235500

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0022873
Physical Location & Seq
Reverse (-)
23430296 .. 23430756
461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG235500.1

Sequence Viewer

Length: 381 bp
ATGCGTGAGGGAGACGGAGTACAAGTAGTACAAGTACATTCTTCTCCGGAACATTCTTTACTACCGGAGGGGGGTGTTTCCACCGGAGACTCGTACCAGGGTTTTCCATCAAGGACGTCAACTGTGAGGCAAATCATGTATGAACTGAAGAATTCTAATGCTCACAGGATCGGGGTGTATGGAGTTGGAGGTGTGGATGTCAAGAGAAATCCAGACCTGGGAGTAATTCAGAGCAAGATTGTTCGTCAGTTAGGTATGAAGATTATTGACAATGAGAATTTAGATGGAAGAGCAAGTCGTCTATGTGCCAGGATACTAGACAAGAAGATTCTTGTGATTCTGGATGATGTTTGGGAACAAATTGACTTGGATGCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

126

Amino Acids

13.9

Weight (kDa)

5.87

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 74 - 125 9e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022873)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009454
rosa_samantha Rh2AG227400 Rh2BG239300 Rh2DG235500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 46
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 2 cut(s) 151, 277
AcuI CTGAAG 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 116
AfaI GTAC 4 cut(s) 21, 30, 36, 95
AfiI CCNNNNNNNGG 2 cut(s) 71, 218
AjnI CCWGG 3 cut(s) 96, 216, 308
Alw26I GTCTC 2 cut(s) 6, 81
AlwI GGATC 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 46
ApoI RAATTY 2 cut(s) 151, 277
BccI CCATC 2 cut(s) 115, 278
BciT130I CCWGG 3 cut(s) 98, 218, 310
BciVI GTATCC 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 6, 81
BfaI CTAG 1 cut(s) 317
BfuI GTATCC 1 cut(s) 306
Bme1390I CCNGG 3 cut(s) 98, 218, 310
BmrFI CCNGG 3 cut(s) 98, 218, 310
BmsI GCATC 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 97, 217
BsaWI WCCGGW 3 cut(s) 46, 64, 83
BsaXI ACNNNNNCTCC 3 cut(s) 9, 33, 39
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 218
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 3 cut(s) 98, 218, 310
BseDI CCNNGG 2 cut(s) 97, 217
BseGI GGATG 3 cut(s) 202, 349, 376
BseLI CCNNNNNNNGG 2 cut(s) 71, 218
BsiSI CCGG 3 cut(s) 47, 65, 84
BslI CCNNNNNNNGG 2 cut(s) 71, 218
BsmAI GTCTC 2 cut(s) 6, 81
BsmBI CGTCTC 1 cut(s) 6
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 1 cut(s) 168
BspEI TCCGGA 1 cut(s) 46
BspPI GGATC 1 cut(s) 176
BspQI GCTCTTC 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 97, 217
BssMI GATC 1 cut(s) 168
BssNI GRCGYC 1 cut(s) 116
Bst2UI CCWGG 3 cut(s) 98, 218, 310
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 116
BstF5I GGATG 3 cut(s) 202, 349, 376
BstKTI GATC 1 cut(s) 171
BstMAI GTCTC 2 cut(s) 6, 81
BstMBI GATC 1 cut(s) 168
BstNI CCWGG 3 cut(s) 98, 218, 310
BstSCI CCNGG 3 cut(s) 96, 216, 308
BsuI GTATCC 1 cut(s) 306
BtsCI GGATG 3 cut(s) 202, 349, 376
Csp6I GTAC 4 cut(s) 20, 29, 35, 94
CviAII CATG 1 cut(s) 136
CviQI GTAC 4 cut(s) 20, 29, 35, 94
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 3 cut(s) 96, 216, 308
Esp3I CGTCTC 1 cut(s) 6
FaeI CATG 1 cut(s) 139
FaiI YATR 5 cut(s) 137, 141, 180, 257, 304
FatI CATG 1 cut(s) 135
FokI GGATG 2 cut(s) 209, 356
FspBI CTAG 1 cut(s) 317
HapII CCGG 3 cut(s) 47, 65, 84
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 1 cut(s) 139
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 3 cut(s) 89, 328, 337
HpaII CCGG 3 cut(s) 47, 65, 84
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 4 cut(s) 47, 202, 212, 341
Hpy8I GTNNAC 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 1 cut(s) 139
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 1 cut(s) 168
LguI GCTCTTC 1 cut(s) 283
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 116
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 5 cut(s) 33, 160, 271, 300, 337
MluCI AATT 4 cut(s) 151, 225, 277, 360
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 3 cut(s) 61, 120, 182
MroI TCCGGA 1 cut(s) 46
MspI CCGG 3 cut(s) 47, 65, 84
MspR9I CCNGG 3 cut(s) 98, 218, 310
MvaI CCWGG 3 cut(s) 98, 218, 310
NdeII GATC 1 cut(s) 168
NlaIII CATG 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 328, 337
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Psp6I CCWGG 3 cut(s) 96, 216, 308
PspGI CCWGG 3 cut(s) 96, 216, 308
PsrI GAACNNNNNNTAC 2 cut(s) 42, 74
RsaI GTAC 4 cut(s) 21, 30, 36, 95
RsaNI GTAC 4 cut(s) 20, 29, 35, 94
SapI GCTCTTC 1 cut(s) 283
Sau3AI GATC 1 cut(s) 168
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 3 cut(s) 98, 218, 310
SetI ASST 4 cut(s) 119, 193, 219, 256
SfaNI GCATC 1 cut(s) 361
Sse9I AATT 4 cut(s) 151, 225, 277, 360
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 3 cut(s) 96, 216, 308
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 119
TasI AATT 4 cut(s) 151, 225, 277, 360
TatI WGTACW 3 cut(s) 19, 28, 34
TfiI GAWTC 2 cut(s) 328, 337
TspDTI ATGAA 2 cut(s) 156, 272
TspGWI ACGGA 1 cut(s) 30
XapI RAATTY 2 cut(s) 151, 277
XspI CTAG 1 cut(s) 317
ZraI GACGTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.