Rh2DG338200

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0025591
Physical Location & Seq
Reverse (-)
43611728 .. 43632790
21063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG338200.1

Sequence Viewer

Length: 303 bp
ATGAATTGCCGAAGAATCAATAATGATGTCGCCATGCAATCGCTGAAAACCGTAATTCAGCAACACCATCCTTCATTCATCTTTTTGAGTGAGATTAAGGTTCATGATTGGGATTACATGAATGAACTGAGATTTAAGATTGGGTACCTTAACTATAAGCTAGTTTTTAGTGTGGGGCAAGAAGGAGGCGTCGCAATATTCTGGGATGAAGGCCTTGATGTGCATCATCGATCAGAGTCGCTGCACCATATAGACGTACAGGTGCATGCGACAGATGGCACTAGTGTCACATGGAGACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

100

Amino Acids

11.71

Weight (kDa)

6.2

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025591)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8417703.1_g000001 Rmu_sc0005075.1_g000008
rosa_samantha Rh2DG338200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 2 cut(s) 146, 258
AhlI ACTAGT 1 cut(s) 281
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 289
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 241
Asp718I GGTACC 1 cut(s) 144
BanI GGYRCC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 228
BccI CCATC 2 cut(s) 75, 269
BcoDI GTCTC 1 cut(s) 289
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 2 cut(s) 161, 282
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 146
BmsI GCATC 1 cut(s) 232
Bsa29I ATCGAT 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 229
BseGI GGATG 2 cut(s) 67, 211
BseJI GATNNNNATC 1 cut(s) 222
BseMII CTCAG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 228
BsgI GTGCAG 1 cut(s) 227
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 230
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 120
BspDI ATCGAT 1 cut(s) 229
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 144
BssMI GATC 1 cut(s) 230
BssNI GRCGYC 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 52, 300
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 67, 211
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 228
Bsu15I ATCGAT 1 cut(s) 229
BsuRI GGCC 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 229
BtsCI GGATG 2 cut(s) 67, 211
Cac8I GCNNGC 1 cut(s) 267
CciI TCATGA 1 cut(s) 103
ClaI ATCGAT 1 cut(s) 229
CseI GACGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 145, 257
CviAII CATG 5 cut(s) 34, 104, 118, 266, 291
CviJI RGCY 2 cut(s) 160, 213
CviKI_1 RGCY 2 cut(s) 160, 213
CviQI GTAC 2 cut(s) 145, 257
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
Eco147I AGGCCT 1 cut(s) 213
FaeI CATG 5 cut(s) 37, 107, 121, 269, 294
FaiI YATR 8 cut(s) 35, 105, 119, 156, 249, 251, 267, 292
FatI CATG 5 cut(s) 33, 103, 117, 265, 290
Fnu4HI GCNGC 1 cut(s) 242
FokI GGATG 2 cut(s) 54, 218
Fsp4HI GCNGC 1 cut(s) 242
FspBI CTAG 2 cut(s) 161, 282
GluI GCNGC 1 cut(s) 242
HaeIII GGCC 1 cut(s) 213
HgaI GACGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 5 cut(s) 37, 107, 121, 269, 294
HinfI GANTC 2 cut(s) 15, 236
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 104
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 3 cut(s) 81, 176, 203
HpyCH4III ACNGT 2 cut(s) 52, 300
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 4 cut(s) 37, 223, 244, 265
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 5 cut(s) 37, 107, 121, 269, 294
KpnI GGTACC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 230
LpnPI CCDG 2 cut(s) 187, 245
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 161, 282
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 1 cut(s) 24
MluCI AATT 2 cut(s) 4, 54
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 1 cut(s) 179
MseI TTAA 3 cut(s) 96, 135, 150
NdeII GATC 1 cut(s) 230
NlaIII CATG 5 cut(s) 37, 107, 121, 269, 294
NlaIV GGNNCC 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 1 cut(s) 269
PaeI GCATGC 1 cut(s) 269
PagI TCATGA 1 cut(s) 103
PceI AGGCCT 1 cut(s) 213
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 243
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 146
RsaI GTAC 2 cut(s) 146, 258
RsaNI GTAC 2 cut(s) 145, 257
SaqAI TTAA 3 cut(s) 96, 135, 150
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 1 cut(s) 230
SchI GAGTC 1 cut(s) 245
SetI ASST 5 cut(s) 102, 150, 162, 258, 264
SfaNI GCATC 1 cut(s) 232
SpeI ACTAGT 1 cut(s) 281
SphI GCATGC 1 cut(s) 269
Sse9I AATT 2 cut(s) 4, 54
SseBI AGGCCT 1 cut(s) 213
SspI AATATT 1 cut(s) 198
SspMI CTAG 2 cut(s) 161, 282
StuI AGGCCT 1 cut(s) 213
TaaI ACNGT 2 cut(s) 52, 300
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 229
TasI AATT 2 cut(s) 4, 54
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 3 cut(s) 96, 135, 150
Tru9I TTAA 3 cut(s) 96, 135, 150
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 7 cut(s) 17, 63, 67, 92, 134, 138, 222
XceI RCATGY 1 cut(s) 269
XspI CTAG 2 cut(s) 161, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.