Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0024851

Physical Location & Seq

Genomic Coordinates Forward (+)

77621403 .. 77633826

Gene Structure 12424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG547700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAGCTCTGGACTGTCGACCACCCCGCCTCCATTTGCACCTTCAAGGAGAACTCCTACTGCGTCTACTCCGCCATGTTTGGTGTGAAGAGCTCGGAAGCTCGTTCCGATCGTAATGGAGGCCTTCGAGACCTCCAGCGGGTACAACTAGGTGAGTGCCTAAAGACAATTATTTATGTTGATTACCCTGAGCGGTGGCCACGACTTTTAGACTGGGTGAAGCACAACTTGCAAGACCAACAAGTTCATGGAGCTTTGTTAGTTTTGCAGATTCTATCTAGAAAACAAGATGTTGATGTGTTCGAATACAGCTTTTTAGAGCAGTCTCCTATTGAAATAGATGTCTCTGCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031047 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko04013 map04013

Pfam Domains

Protein Families

Cse1 IBN_N

Protein Analysis

118

Amino Acids

13.72

Weight (kDa)

5.54

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024851)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0157261
rosa_samantha	Rh2BG538700 Rh2DG547700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	193
AccI	GTMKAC	2 cut(s)	18, 66
AciI	CCGC	4 cut(s)	27, 72, 139, 193
AcoI	YGGCCR	1 cut(s)	197
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	46, 335
AluBI	AGCT	5 cut(s)	7, 93, 101, 254, 312
AluI	AGCT	5 cut(s)	7, 93, 101, 254, 312
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	3 cut(s)	123, 330, 349
AoxI	GGCC	2 cut(s)	121, 197
AsuHPI	GGTGA	2 cut(s)	164, 229
AsuII	TTCGAA	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	95
BcoDI	GTCTC	3 cut(s)	123, 330, 349
BfaI	CTAG	2 cut(s)	149, 279
BmrI	ACTGGG	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	123, 199
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	3 cut(s)	123, 330, 349
BsnI	GGCC	2 cut(s)	123, 199
Bso31I	GGTCTC	1 cut(s)	123
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	4 cut(s)	27, 72, 139, 193
BspANI	GGCC	2 cut(s)	123, 199
BspCNI	CTCAG	1 cut(s)	181
BspQI	GCTCTTC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	218
BssMI	GATC	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	3 cut(s)	123, 330, 349
BstMBI	GATC	1 cut(s)	109
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	123, 199
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	2 cut(s)	76, 248
CviJI	RGCY	7 cut(s)	7, 93, 101, 123, 199, 254, 312
CviKI_1	RGCY	7 cut(s)	7, 93, 101, 123, 199, 254, 312
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	95
FaeI	CATG	2 cut(s)	79, 251
FaiI	YATR	3 cut(s)	77, 177, 249
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	2 cut(s)	75, 247
FauI	CCCGC	2 cut(s)	34, 132
FblI	GTMKAC	2 cut(s)	18, 66
FriOI	GRGCYC	1 cut(s)	95
FspBI	CTAG	2 cut(s)	149, 279
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	123, 199
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	79, 251
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	1 cut(s)	271
HphI	GGTGA	2 cut(s)	164, 229
Hpy166II	GTNNAC	2 cut(s)	19, 67
Hpy188I	TCNGA	3 cut(s)	97, 109, 356
Hpy188III	TCNNGA	3 cut(s)	10, 128, 279
Hpy8I	GTNNAC	2 cut(s)	19, 67
HpyAV	CCTTC	2 cut(s)	52, 134
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	3 cut(s)	39, 232, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	79, 251
Kzo9I	GATC	1 cut(s)	109
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	3 cut(s)	149, 199, 201
MaeI	CTAG	2 cut(s)	149, 279
MalI	GATC	1 cut(s)	111
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	1 cut(s)	109
MboII	GAAGA	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	199
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	199
MnlI	CCTC	3 cut(s)	40, 113, 143
Mox20I	TGGCCA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	199
Msp20I	TGGCCA	1 cut(s)	199
MspA1I	CMGCKG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	79, 251
NspV	TTCGAA	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	123
PciSI	GCTCTTC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	271
Ple19I	CGATCG	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	95
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	95
SalI	GTCGAC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	83
Sau3AI	GATC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	8 cut(s)	9, 44, 95, 103, 135, 154, 256, 314
SfuI	TTCGAA	1 cut(s)	303
Sse9I	AATT	1 cut(s)	168
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	4 cut(s)	27, 72, 139, 193
SspMI	CTAG	2 cut(s)	149, 279
SstI	GAGCTC	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	3 cut(s)	18, 127, 303
TasI	AATT	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	17, 236
XbaI	TCTAGA	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	245
XmiI	GTMKAC	2 cut(s)	18, 66
XspI	CTAG	2 cut(s)	149, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.