Rh2DG564500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
79396186 .. 79468834
72649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG564500.1

Sequence Viewer

Length: 435 bp
ATGGGGAATTGCATGATGAGAAGTAACAGCAAGGTTTCGGCACAAGATCATGACAAGCATGACCCAGCTGAAAAGGAAGTAGAAGCAATACAGCCCACAGGGACACCAATGTCGTGGAAGAAGGAGAAGAAGACGGTGAGATTTAATTTACCAGAAGATGAAGATGATGGAGGTAGAGGAATAAAGAATGGCACGCATGATGAGTCTAAAAGTGGAGCTGTGAGGATTAGACTGGTGGTGACTCAAGAAGAGTTGAAACAACTACTGAATTACAAGAACGATTCAATTTCAAACCGCTCTTCTGTGGAGCAATTGTTCAGTTCATTGAAGTCCAGATCAGGAAAGAGGGTTTCCGCAGATCAATATGGAAAACATACAACTACTGACGAAAGTTGGAGACCAGTTTTAGAGAGTATTTCAGAAGACCAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.22

Weight (kDa)

6.43

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 109
AccBSI CCGCTC 1 cut(s) 297
AciI CCGC 2 cut(s) 295, 354
AgsI TTSAA 4 cut(s) 256, 285, 291, 328
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 2 cut(s) 68, 218
AluI AGCT 2 cut(s) 68, 218
Alw26I GTCTC 1 cut(s) 391
AsuHPI GGTGA 2 cut(s) 148, 250
BbsI GAAGAC 2 cut(s) 137, 429
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 391
BpiI GAAGAC 2 cut(s) 137, 429
BpuEI CTTGAG 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 391
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bse1I ACTGG 2 cut(s) 237, 401
BseNI ACTGG 2 cut(s) 237, 401
BseYI CCCAGC 1 cut(s) 64
BslFI GGGAC 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 391
Bsp143I GATC 3 cut(s) 46, 335, 358
BspACI CCGC 2 cut(s) 295, 354
BspHI TCATGA 1 cut(s) 49
BspQI GCTCTTC 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 391
BsrBI CCGCTC 1 cut(s) 297
BsrI ACTGG 2 cut(s) 237, 401
BssMI GATC 3 cut(s) 46, 335, 358
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 2 cut(s) 243, 304
BstC8I GCNNGC 1 cut(s) 194
BstKTI GATC 3 cut(s) 49, 338, 361
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 3 cut(s) 46, 335, 358
BstV2I GAAGAC 2 cut(s) 137, 429
BstXI CCANNNNNNTGG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 194
CciI TCATGA 1 cut(s) 49
CviAII CATG 4 cut(s) 13, 50, 59, 197
CviJI RGCY 3 cut(s) 68, 94, 218
CviKI_1 RGCY 3 cut(s) 68, 94, 218
DpnI GATC 3 cut(s) 48, 337, 360
DpnII GATC 3 cut(s) 46, 335, 358
DrdI GACNNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 243, 304
EarI CTCTTC 2 cut(s) 243, 304
Eco31I GGTCTC 1 cut(s) 391
FaeI CATG 4 cut(s) 16, 53, 62, 200
FaiI YATR 6 cut(s) 14, 51, 60, 198, 366, 375
FaqI GGGAC 1 cut(s) 115
FatI CATG 4 cut(s) 12, 49, 58, 196
GsaI CCCAGC 1 cut(s) 68
Hin1II CATG 4 cut(s) 16, 53, 62, 200
HinfI GANTC 3 cut(s) 203, 241, 281
HphI GGTGA 2 cut(s) 148, 250
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 4 cut(s) 50, 245, 333, 339
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 1 cut(s) 12
Hsp92II CATG 4 cut(s) 16, 53, 62, 200
Kzo9I GATC 3 cut(s) 46, 335, 358
LguI GCTCTTC 1 cut(s) 304
LmnI GCTCC 2 cut(s) 215, 307
LpnPI CCDG 7 cut(s) 78, 84, 165, 218, 324, 346, 414
MaeIII GTNAC 2 cut(s) 23, 238
MalI GATC 3 cut(s) 48, 337, 360
MbiI CCGCTC 1 cut(s) 297
MboI GATC 3 cut(s) 46, 335, 358
MboII GAAGA 8 cut(s) 130, 139, 142, 167, 173, 260, 291, 434
MfeI CAATTG 1 cut(s) 311
MluCI AATT 5 cut(s) 7, 145, 268, 285, 311
MlyI GAGTC 2 cut(s) 212, 235
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 4 cut(s) 164, 170, 216, 339
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 68
MunI CAATTG 1 cut(s) 311
NdeII GATC 3 cut(s) 46, 335, 358
NlaIII CATG 4 cut(s) 16, 53, 62, 200
NmuCI GTSAC 1 cut(s) 238
PagI TCATGA 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 304
PfeI GAWTC 1 cut(s) 281
PleI GAGTC 2 cut(s) 211, 235
PpsI GAGTC 2 cut(s) 211, 235
PspFI CCCAGC 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 68
SapI GCTCTTC 1 cut(s) 304
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 3 cut(s) 46, 335, 358
SchI GAGTC 2 cut(s) 212, 235
SetI ASST 4 cut(s) 36, 70, 175, 220
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 5 cut(s) 7, 145, 268, 285, 311
SsiI CCGC 2 cut(s) 295, 354
TaaI ACNGT 1 cut(s) 136
TasI AATT 5 cut(s) 7, 145, 268, 285, 311
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 174, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.