Rh2DG574500

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0033120
Physical Location & Seq
Reverse (-)
80475253 .. 80475771
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG574500.1

Sequence Viewer

Length: 519 bp
ATGCTTCCTGGCATGAAAATTGGCTTTAACCAAAGTACTGGCCAGCAATTGCGACTTACATCCTGGGCAGCATTTGATGTTCCACAGCCCGGAAAGTTCACAAGCGCCATGGATCCTAAAGTGCCTTCACAGTTTCTTACCTGGAAGGAAAATGTTCCATATTGGAGAAGTGCTATCTATGTTGACTCTGGAGGGAAACCAATTGGTGGAGGTTCAAGTGGAGAATTTTTCAGTAATGATGATGGAACCTTCTTTTACCTTGCTTACAACAATCATGATGAGGAGGATATTTTTACTTATGGTGTCTCCAATAACTCAGTAAAACTGATGATGGTTTTGAAGGCGTCTGGAATGCTACTACGTAATGCAGCTGACAGCTGTGGAAGGAAGACAAGAGAATATGGAGTCCAATCAGTCCATTATGGGGAGAGCCTCTTCATACATGTGATTATATTGCTCGTTGCAGTCCAAATGGTGCCTGTGATAAATATGAATCTGCCTCACCATGCAAGTGTTTGA

Protein Analysis

172

Amino Acids

19.03

Weight (kDa)

6.5

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0033120)

Species Orthologous Gene IDs
rosa_samantha Rh2BG565800 Rh2DG574500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 475
AccB7I CCANNNNNTGG 1 cut(s) 206
AclWI GGATC 2 cut(s) 107, 120
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 3 cut(s) 89, 206, 424
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 2 cut(s) 216, 340
AjnI CCWGG 3 cut(s) 7, 62, 140
AluBI AGCT 2 cut(s) 371, 378
AluI AGCT 2 cut(s) 371, 378
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 2 cut(s) 107, 120
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 68, 368
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 494
BalI TGGCCA 1 cut(s) 42
BamHI GGATCC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 80, 380
BccI CCATC 2 cut(s) 236, 325
BciT130I CCWGG 3 cut(s) 9, 64, 142
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 310
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 2 cut(s) 69, 369
BlsI GCNGC 2 cut(s) 70, 370
BmcAI AGTACT 1 cut(s) 37
Bme1390I CCNGG 4 cut(s) 9, 64, 90, 142
BmiI GGNNCC 3 cut(s) 114, 247, 477
BmrFI CCNGG 4 cut(s) 9, 64, 90, 142
BpiI GAAGAC 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 90
BsaAI YACGTR 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 63, 108
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 206, 424
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 3 cut(s) 9, 64, 142
BseDI CCNNGG 2 cut(s) 63, 108
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 89, 206, 424
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 2 cut(s) 80, 380
BshFI GGCC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 475
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 3 cut(s) 89, 206, 424
BsmAI GTCTC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 357
BsnI GGCC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 112
Bsp19I CCATGG 1 cut(s) 108
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 329
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 3 cut(s) 114, 247, 477
BspPI GGATC 2 cut(s) 107, 120
BspT107I GGYRCC 1 cut(s) 475
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 63, 108
BssMI GATC 1 cut(s) 112
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 3 cut(s) 9, 64, 142
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 440
BstACI GRCGYC 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 316
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 1 cut(s) 112
BstNI CCWGG 3 cut(s) 9, 64, 142
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 4 cut(s) 7, 62, 88, 140
BstSNI TACGTA 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 80, 380
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 112
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 44
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 107
CseI GACGC 1 cut(s) 333
Csp6I GTAC 1 cut(s) 36
CviAII CATG 5 cut(s) 13, 109, 275, 443, 506
CviJI RGCY 6 cut(s) 24, 42, 88, 371, 378, 432
CviKI_1 RGCY 6 cut(s) 24, 42, 88, 371, 378, 432
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 1 cut(s) 316
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco105I TACGTA 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 108
EcoRII CCWGG 3 cut(s) 7, 62, 140
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 5 cut(s) 16, 112, 278, 446, 509
FatI CATG 5 cut(s) 12, 108, 274, 442, 505
Fnu4HI GCNGC 2 cut(s) 69, 369
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 69, 369
GlaI GCGC 1 cut(s) 106
GluI GCNGC 2 cut(s) 69, 369
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 333
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 5 cut(s) 16, 112, 278, 446, 509
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 3 cut(s) 185, 405, 493
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 99, 184
Hpy188III TCNNGA 3 cut(s) 189, 275, 348
Hpy8I GTNNAC 2 cut(s) 99, 184
HpyAV CCTTC 5 cut(s) 135, 139, 259, 334, 378
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 3 cut(s) 368, 464, 509
HpyF3I CTNAG 1 cut(s) 316
HpySE526I ACGT 1 cut(s) 361
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 5 cut(s) 16, 112, 278, 446, 509
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 112
Lsp1109I GCAGC 2 cut(s) 80, 380
MaeII ACGT 1 cut(s) 361
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 2 cut(s) 400, 427
MfeI CAATTG 2 cut(s) 47, 201
MflI RGATCY 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 4 cut(s) 18, 47, 201, 224
MluNI TGGCCA 1 cut(s) 42
MlyI GAGTC 2 cut(s) 179, 414
MnlI CCTC 6 cut(s) 185, 203, 274, 277, 443, 510
Mox20I TGGCCA 1 cut(s) 42
MroXI GAANNNNTTC 1 cut(s) 153
MscI TGGCCA 1 cut(s) 42
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 2 cut(s) 443, 510
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 2 cut(s) 371, 378
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 4 cut(s) 9, 64, 90, 142
MunI CAATTG 2 cut(s) 47, 201
Mva1269I GAATGC 1 cut(s) 357
MvaI CCWGG 3 cut(s) 9, 64, 142
NciI CCSGG 1 cut(s) 90
NcoI CCATGG 1 cut(s) 108
NdeII GATC 1 cut(s) 112
NlaIII CATG 5 cut(s) 16, 112, 278, 446, 509
NlaIV GGNNCC 3 cut(s) 114, 247, 477
NspI RCATGY 1 cut(s) 446
PagI TCATGA 1 cut(s) 274
PciI ACATGT 1 cut(s) 442
PctI GAATGC 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 493
PflMI CCANNNNNTGG 1 cut(s) 206
PkrI GCNGC 2 cut(s) 70, 370
PleI GAGTC 2 cut(s) 179, 413
PpsI GAGTC 2 cut(s) 179, 413
Ppu21I YACGTR 1 cut(s) 362
PscI ACATGT 1 cut(s) 442
Psp6I CCWGG 3 cut(s) 7, 62, 140
PspGI CCWGG 3 cut(s) 7, 62, 140
PspN4I GGNNCC 3 cut(s) 114, 247, 477
PsuI RGATCY 1 cut(s) 112
PvuII CAGCTG 2 cut(s) 371, 378
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 2 cut(s) 443, 510
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 2 cut(s) 69, 369
Sau3AI GATC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 37
SchI GAGTC 2 cut(s) 179, 414
ScrFI CCNGG 4 cut(s) 9, 64, 90, 142
SetI ASST 7 cut(s) 143, 214, 251, 261, 364, 373, 380
SmiMI CAYNNNNRTG 2 cut(s) 443, 510
SnaBI TACGTA 1 cut(s) 362
Sse9I AATT 4 cut(s) 18, 47, 201, 224
StyD4I CCNGG 4 cut(s) 7, 62, 88, 140
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 132
TaiI ACGT 1 cut(s) 364
TasI AATT 4 cut(s) 18, 47, 201, 224
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseI GCWGC 2 cut(s) 68, 368
TspDTI ATGAA 3 cut(s) 29, 427, 506
Van91I CCANNNNNTGG 1 cut(s) 206
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 153
ZrmI AGTACT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.