Rh2DG632900
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0029395
Physical Location & Seq
Reverse (-)
86196265 .. 86197318
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG632900.1

Sequence Viewer

Length: 522 bp
ATGGGTTTGTTAAAGGTGGAGACTTGGGATGGGAGCAAATCAAAGGGAAGGAAGAAGAAGAAGAAGGATCAGGCTGTGGAGGAAACTGGGTGTTGGATTAAGTTCTCTTTTGGGATTTGCATGCCTTCTTCAAGATCCAAAGTTGATAGCACCATGACTGGGACTACTATATCTTTTGCGGAAACTAAATCTTCAAATGAAAAAAGTAGAGATCGAGACCTTACTCGTGGAGGGTCCTCTACAACTACTAGTAATGCTGGAAGTACTACATCCACACCCTATTTCAGTGAGGAACTGAAGGTTGCTTCTCAGCTGCGGAAATTCACATTTAATGACCTTAAGTTAGCAACTAGAAACTTCAGACCGGAGTCTCTTCTTGGGGAGGGTGGATTTGGTTGTGTGTTCAAGGGCTGGATAGAGGAGAATGGAACTGCTCCTGTGAAGCCTGGTACTGGGCTTACAGTCGCAGTTAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAATGGCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

173

Amino Acids

18.9

Weight (kDa)

9.49

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029395)

Species Orthologous Gene IDs
pyrus_communis pycom111g03690
rosa_samantha Rh2DG632900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 498
AciI CCGC 2 cut(s) 179, 316
AclWI GGATC 2 cut(s) 75, 129
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 3 cut(s) 317, 343, 479
AfaI GTAC 2 cut(s) 265, 451
AfiI CCNNNNNNNGG 2 cut(s) 159, 452
AflII CTTAAG 1 cut(s) 338
AgsI TTSAA 3 cut(s) 132, 195, 406
AhlI ACTAGT 1 cut(s) 248
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 3 cut(s) 14, 210, 375
AlwI GGATC 2 cut(s) 75, 129
ApeKI GCWGC 1 cut(s) 313
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 234
AvaII GGWCC 1 cut(s) 234
BauI CACGAG 1 cut(s) 225
BbvI GCAGC 1 cut(s) 300
BccI CCATC 2 cut(s) 23, 482
BciT130I CCWGG 1 cut(s) 447
BcoDI GTCTC 3 cut(s) 14, 210, 375
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 2 cut(s) 249, 351
BfrI CTTAAG 1 cut(s) 338
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 447
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 447
BmrI ACTGGG 3 cut(s) 96, 168, 462
BmuI ACTGGG 3 cut(s) 96, 168, 462
BoxI GACNNNNGTC 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 452
Bse1I ACTGG 3 cut(s) 91, 163, 457
BseBI CCWGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 34, 269
BseLI CCNNNNNNNGG 2 cut(s) 159, 452
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 3 cut(s) 91, 163, 457
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 300
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 2 cut(s) 159, 452
BsmAI GTCTC 3 cut(s) 14, 210, 375
BsmFI GGGAC 1 cut(s) 175
Bso31I GGTCTC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 67, 134, 211
BspACI CCGC 2 cut(s) 179, 316
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 2 cut(s) 75, 129
BspTI CTTAAG 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 210
BsrI ACTGG 3 cut(s) 91, 163, 457
BssMI GATC 3 cut(s) 67, 134, 211
BssSI CACGAG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 1 cut(s) 378
BstAFI CTTAAG 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 34, 269
BstKTI GATC 3 cut(s) 70, 137, 214
BstMAI GTCTC 3 cut(s) 14, 210, 375
BstMBI GATC 3 cut(s) 67, 134, 211
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 124
BstPAI GACNNNNGTC 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BtsCI GGATG 2 cut(s) 34, 269
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 264, 450
CviAII CATG 3 cut(s) 121, 154, 485
CviJI RGCY 6 cut(s) 74, 313, 411, 445, 457, 514
CviKI_1 RGCY 6 cut(s) 74, 313, 411, 445, 457, 514
CviQI GTAC 2 cut(s) 264, 450
DdeI CTNAG 1 cut(s) 309
DpnI GATC 3 cut(s) 69, 136, 213
DpnII GATC 3 cut(s) 67, 134, 211
DrdI GACNNNNNNGTC 1 cut(s) 498
DseDI GACNNNNNNGTC 1 cut(s) 498
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 3 cut(s) 317, 343, 479
EcoO109I RGGNCCY 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 445
FaeI CATG 3 cut(s) 124, 157, 488
FaiI YATR 5 cut(s) 122, 155, 170, 486, 520
FalI AAGNNNNNCTT 1 cut(s) 498
FaqI GGGAC 1 cut(s) 175
FatI CATG 3 cut(s) 120, 153, 484
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 2 cut(s) 41, 256
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 2 cut(s) 249, 351
GluI GCNGC 1 cut(s) 314
HapII CCGG 1 cut(s) 365
Hin1II CATG 3 cut(s) 124, 157, 488
HinfI GANTC 1 cut(s) 368
HpaII CCGG 1 cut(s) 365
Hpy188I TCNGA 1 cut(s) 362
Hpy188III TCNNGA 2 cut(s) 132, 215
HpyAV CCTTC 4 cut(s) 42, 58, 135, 292
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4V TGCA 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 3 cut(s) 124, 157, 488
Kzo9I GATC 3 cut(s) 67, 134, 211
LmnI GCTCC 2 cut(s) 33, 439
Lsp1109I GCAGC 1 cut(s) 300
MaeI CTAG 2 cut(s) 249, 351
MaeIII GTNAC 1 cut(s) 500
MalI GATC 3 cut(s) 69, 136, 213
MboI GATC 3 cut(s) 67, 134, 211
MboII GAAGA 7 cut(s) 64, 67, 70, 73, 120, 183, 365
MflI RGATCY 1 cut(s) 134
MluCI AATT 1 cut(s) 320
MlyI GAGTC 1 cut(s) 377
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 7 cut(s) 73, 224, 247, 283, 376, 412, 488
MseI TTAA 5 cut(s) 11, 99, 330, 339, 471
MspA1I CMGCKG 1 cut(s) 313
MspCI CTTAAG 1 cut(s) 338
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 447
NdeII GATC 3 cut(s) 67, 134, 211
NlaIII CATG 3 cut(s) 124, 157, 488
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PpuMI RGGWCCY 1 cut(s) 234
PshAI GACNNNNGTC 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 234
PspPPI RGGWCCY 1 cut(s) 234
PsuI RGATCY 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 2 cut(s) 265, 451
RsaNI GTAC 2 cut(s) 264, 450
SaqAI TTAA 5 cut(s) 11, 99, 330, 339, 471
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 3 cut(s) 67, 134, 211
Sau96I GGNCC 1 cut(s) 234
ScaI AGTACT 1 cut(s) 265
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 447
SetI ASST 5 cut(s) 18, 222, 303, 315, 339
SinI GGWCC 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SpeI ACTAGT 1 cut(s) 248
SphI GCATGC 1 cut(s) 124
Sse9I AATT 1 cut(s) 320
SsiI CCGC 2 cut(s) 179, 316
SspMI CTAG 2 cut(s) 249, 351
StyD4I CCNGG 1 cut(s) 445
TaaI ACNGT 1 cut(s) 463
TaqI TCGA 1 cut(s) 214
TasI AATT 1 cut(s) 320
TatI WGTACW 1 cut(s) 263
Tru1I TTAA 5 cut(s) 11, 99, 330, 339, 471
Tru9I TTAA 5 cut(s) 11, 99, 330, 339, 471
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 292
Vha464I CTTAAG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 124
XspI CTAG 2 cut(s) 249, 351
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.