Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0032488

Physical Location & Seq

Genomic Coordinates Reverse (-)

6960547 .. 6964181

Gene Structure 3635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG086700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCCTCTGATCTCAAAGCAGAGTTATCCAAGGAAGCTCTTTTTGGGCTGAAGGTCTGGGAAGTGATTGGCATAGCTGTTGCGTTGTTTATCATAATAATCCTTACTGTCCTATCACTGTGCCTCACTTCGCGTAAGAAATCGAGAAAAGCTGGGGCCAAGATTCCCCATAGTCAAATCCCAACTGTCTCAAAAGAAATTAAGGAAGTTCGAGTGGAGCAAATAACAGCCAGTGAATTTGTTCCCCGTGATGGAATTCTTCTTACCATTCATGACAAATCCAGTGACAGAGAATCCGATAAGGTTATGGTCCATCTGGGTATGGGAAAATCAAAGAATGGAGACAATAGTAGTCAGTCAGGTTCATTTAATCATTTAGACAAAGATGGTGGAGGGTCTCAATCTGGAGAAGAAGGGAGTTCTGCCACGGGTACAGTGTATAAGCCTTCTTCATCGTATCCCGTAAATCTGGTTGATTGGCTTAAAATGATGGTTGGCAGCAGAAGATCAGAAGAAGTGGTGGACCCAAACATTGAAGTCAGACCATCAACAAGAGCCTTAAAACGAGCACTCTTGACTGCTTTGAGGTGTGTCGATCCAGATTCTGAAAAACGGCCCAAGATGAGCCAAGTTGTCCGTATGCTCGAGTCCGAAGAGTATCCTATACCAAGAGAGGATCGAAGGAACCGAAGGACTCAAGCAGGTAGCATGGAGATCGACTCCCAAAAGGAAAATTCAGATACTGATCGGAGTGATTATCCTGTTTCAAGATCAGAGAGTAGAGACTACCAACAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

266

Amino Acids

29.63

Weight (kDa)

8.74

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032488)

Species	Orthologous Gene IDs
rosa_samantha	Rh3AG086700 Rh3DG090600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	692
AccII	CGCG	1 cut(s)	133
AclWI	GGATC	2 cut(s)	590, 684
AcsI	RAATTY	3 cut(s)	236, 255, 733
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	536, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	27, 59
AluBI	AGCT	3 cut(s)	38, 77, 152
AluI	AGCT	3 cut(s)	38, 77, 152
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	4 cut(s)	193, 336, 402, 777
AlwI	GGATC	2 cut(s)	590, 684
AlwNI	CAGNNNCTG	2 cut(s)	605, 743
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	3 cut(s)	3, 156, 614
ApeKI	GCWGC	1 cut(s)	498
ApoI	RAATTY	3 cut(s)	236, 255, 733
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	4 cut(s)	156, 310, 523, 615
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	2 cut(s)	310, 523
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	5 cut(s)	245, 321, 380, 484, 553
BceAI	ACGGC	1 cut(s)	629
BcgI	CGANNNNNNTGC	2 cut(s)	697, 731
BciVI	GTATCC	2 cut(s)	468, 669
BcoDI	GTCTC	4 cut(s)	193, 336, 402, 777
BfuAI	ACCTGC	1 cut(s)	692
BfuI	GTATCC	2 cut(s)	468, 669
BisI	GCNGC	1 cut(s)	499
BlsI	GCNGC	1 cut(s)	500
Bme18I	GGWCC	2 cut(s)	310, 523
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	4 cut(s)	156, 310, 523, 615
BmiI	GGNNCC	3 cut(s)	157, 525, 686
BplI	GAGNNNNNCTC	2 cut(s)	704, 736
BpmI	CTGGAG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	681
BsaBI	GATNNNNATC	1 cut(s)	744
BsaI	GGTCTC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	30, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	231, 282
Bse8I	GATNNNNATC	1 cut(s)	744
BseDI	CCNNGG	2 cut(s)	30, 426
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	231, 282
BseXI	GCAGC	1 cut(s)	510
BseYI	CCCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	5, 158, 616
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	4 cut(s)	193, 336, 402, 777
BsnI	GGCC	3 cut(s)	5, 158, 616
Bso31I	GGTCTC	1 cut(s)	402
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	7 cut(s)	10, 506, 595, 676, 714, 745, 770
BspANI	GGCC	3 cut(s)	5, 158, 616
BspFNI	CGCG	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	157, 525, 686
BspMI	ACCTGC	1 cut(s)	692
BspPI	GGATC	2 cut(s)	590, 684
BspTNI	GGTCTC	1 cut(s)	402
BsrI	ACTGG	2 cut(s)	231, 282
BssECI	CCNNGG	2 cut(s)	30, 426
BssMI	GATC	7 cut(s)	10, 506, 595, 676, 714, 745, 770
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	4 cut(s)	109, 120, 187, 436
Bst6I	CTCTTC	1 cut(s)	648
BstDSI	CCRYGG	1 cut(s)	426
BstFNI	CGCG	1 cut(s)	133
BstKTI	GATC	7 cut(s)	13, 509, 598, 679, 717, 748, 773
BstMAI	GTCTC	4 cut(s)	193, 336, 402, 777
BstMBI	GATC	7 cut(s)	10, 506, 595, 676, 714, 745, 770
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	510
BsuI	GTATCC	2 cut(s)	468, 669
BsuRI	GGCC	3 cut(s)	5, 158, 616
BtgI	CCRYGG	1 cut(s)	426
BtsIMutI	CAGTG	4 cut(s)	116, 238, 289, 441
BveI	ACCTGC	1 cut(s)	692
CaiI	CAGNNNCTG	2 cut(s)	605, 743
CciI	TCATGA	1 cut(s)	271
Cfr13I	GGNCC	4 cut(s)	156, 310, 523, 615
Csp6I	GTAC	1 cut(s)	432
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	2 cut(s)	272, 709
CviQI	GTAC	1 cut(s)	432
DpnI	GATC	7 cut(s)	12, 508, 597, 678, 716, 747, 772
DpnII	GATC	7 cut(s)	10, 506, 595, 676, 714, 745, 770
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	402
Eco47I	GGWCC	2 cut(s)	310, 523
Eco57I	CTGAAG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	644
EcoRI	GAATTC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	2 cut(s)	275, 712
FatI	CATG	2 cut(s)	271, 708
Fnu4HI	GCNGC	1 cut(s)	499
Fsp4HI	GCNGC	1 cut(s)	499
GluI	GCNGC	1 cut(s)	499
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	5, 158, 616
Hin1II	CATG	2 cut(s)	275, 712
HinfI	GANTC	6 cut(s)	163, 293, 602, 647, 694, 719
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	9 cut(s)	10, 298, 511, 542, 607, 652, 739, 750, 775
Hpy188III	TCNNGA	6 cut(s)	144, 272, 405, 574, 599, 768
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	5 cut(s)	46, 407, 456, 675, 684
HpyCH4III	ACNGT	4 cut(s)	109, 120, 187, 436
Hsp92II	CATG	2 cut(s)	275, 712
Kzo9I	GATC	7 cut(s)	10, 506, 595, 676, 714, 745, 770
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	7 cut(s)	12, 508, 597, 678, 716, 747, 772
MboI	GATC	7 cut(s)	10, 506, 595, 676, 714, 745, 770
MboII	GAAGA	6 cut(s)	251, 422, 441, 516, 524, 665
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	4 cut(s)	198, 236, 255, 733
MlyI	GAGTC	3 cut(s)	656, 688, 713
MnlI	CCTC	5 cut(s)	16, 134, 386, 579, 667
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	4 cut(s)	201, 369, 483, 560
MvnI	CGCG	1 cut(s)	133
NdeII	GATC	7 cut(s)	10, 506, 595, 676, 714, 745, 770
NlaIII	CATG	2 cut(s)	275, 712
NlaIV	GGNNCC	3 cut(s)	157, 525, 686
NmuCI	GTSAC	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	644
PagI	TCATGA	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	685
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	163, 293, 602
PkrI	GCNGC	1 cut(s)	500
PleI	GAGTC	3 cut(s)	655, 688, 713
PpsI	GAGTC	3 cut(s)	655, 688, 713
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	157, 525, 686
PspPI	GGNCC	4 cut(s)	156, 310, 523, 615
PspXI	VCTCGAGB	1 cut(s)	644
PstNI	CAGNNNCTG	2 cut(s)	605, 743
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	201, 369, 483, 560
SatI	GCNGC	1 cut(s)	499
Sau3AI	GATC	7 cut(s)	10, 506, 595, 676, 714, 745, 770
Sau96I	GGNCC	4 cut(s)	156, 310, 523, 615
SchI	GAGTC	3 cut(s)	656, 688, 713
SduI	GDGCHC	1 cut(s)	571
SetI	ASST	8 cut(s)	40, 57, 79, 154, 306, 364, 590, 706
Sfr274I	CTCGAG	1 cut(s)	644
SinI	GGWCC	2 cut(s)	310, 523
SlaI	CTCGAG	1 cut(s)	644
SmlI	CTYRAG	2 cut(s)	644, 696
SmoI	CTYRAG	2 cut(s)	644, 696
Sse9I	AATT	4 cut(s)	198, 236, 255, 733
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	4 cut(s)	109, 120, 187, 436
TaqI	TCGA	6 cut(s)	143, 211, 594, 645, 679, 717
TasI	AATT	4 cut(s)	198, 236, 255, 733
TfiI	GAWTC	3 cut(s)	163, 293, 602
Tru1I	TTAA	4 cut(s)	201, 369, 483, 560
Tru9I	TTAA	4 cut(s)	201, 369, 483, 560
TscAI	CASTG	4 cut(s)	123, 238, 289, 441
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	498
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	3 cut(s)	260, 354, 441
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	4 cut(s)	123, 238, 289, 441
VpaK11BI	GGWCC	2 cut(s)	310, 523
XapI	RAATTY	3 cut(s)	236, 255, 733
XhoI	CTCGAG	1 cut(s)	644
XmnI	GAANNNNTTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.