Rh3DG090600

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0032488
Physical Location & Seq
Reverse (-)
6966545 .. 6970630
4086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG090600.1

Sequence Viewer

Length: 1134 bp
ATGGCCTCTGATCTCAAAGCAGAGTTATCCAAGGAAGCTTTTTTTGGGCTGAAGGTCTGGGAAGTGATTGGCATAGCTGTTGCGTTGTTTATCATAATAATCCTTACTGTCCTATCACTGTGCCTCACTTCGCGTAAGAAATCAAGAAAAGCTGGGGCCAAGATTCCCCATAGTCAAATCCCAACTGTCTCAAAAGAAATTAAGGAAGTTCGAGTGGAGCAAATAACTGCCAGTGAATTTGTTCCCCGTGATGGAATTCTTCTTACCATTCATGACAAATCCAGTGACAGAGAATCCGATAAGGTTATGGTCCATCTGGGTATGGGAAAATCAAAGAATGGAGACAATAGTAGTCAGTCAGGTTCATTTAATCATTTAGACAAAGATGGTGGAGGGTCTCAATCTGGAGAAGAAGGGAGTTCTGCCACGGGTACAGTGTATAAGCCTTCTTCATCGTATCCCGTAACTGCTCCATCTCCTCTAGTTGGTCTGCCTGAATTCTCGCACTTGGGTTGGGGCCACTGGTTTACATTAAGGGACCTTGAGCTTGCAACAAACAGGTTTTCAAAGGAAAATGTCCTTGGCGAGGGTGGATATGGAGTTGTTTACCGGGGAAATCTCATCAATGGGACTCCTGTCGCAGTTAAAAAGATCCTAAACAACCTATACGTGGCCCCTGAATATGCTAATTCTGGACTTTTGAATGAAAAGAGTGACGTGTATAGCTTTGGGGTTTTGCTCTTAGAAGCCATCACTGGAAGAGATCCTGTAGACTATGGTCGCCCTGCTCCTGAGGTAAATCTGGTTGATTGGCTTAAAATGATGGTTGGCAGCAGAAGATCAGAAGAAGTGGTGGACCCAAACATTGAAGTCAGACCATCAACAAGAGCCTTAAAACGAGCACTCTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAACGGCCCAAGATGAGCCAAGTTGTCCGTATGCTCGAGTCCGAAGAGTATCCTATACCAAGAGAGGATCGAAGGAACCGTAGGACTCAAGCAGGTAGCATGGAGATCGACTCCCAAAAGGAAAATTCAGATACTGATCGGAGTGATTATCCTGTTTCAAGATCAGAGAGTAGAGACTACCAACAGCGATAA

Protein Analysis

377

Amino Acids

41.74

Weight (kDa)

7.04

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 222 - 326 2.8e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032488)

Species Orthologous Gene IDs
rosa_samantha Rh3AG086700 Rh3DG090600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1025
AccI GTMKAC 1 cut(s) 771
AccII CGCG 1 cut(s) 133
AclWI GGATC 4 cut(s) 646, 758, 923, 1017
AcsI RAATTY 4 cut(s) 236, 255, 497, 1066
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 4 cut(s) 251, 485, 586, 670
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 4 cut(s) 567, 703, 869, 1101
AjiI CACGTC 1 cut(s) 718
AjuI GAANNNNNNNTTGG 4 cut(s) 27, 59, 564, 596
AluBI AGCT 5 cut(s) 38, 77, 152, 547, 726
AluI AGCT 5 cut(s) 38, 77, 152, 547, 726
Alw21I GWGCWC 1 cut(s) 904
Alw26I GTCTC 4 cut(s) 193, 336, 402, 1110
AlwI GGATC 4 cut(s) 646, 758, 923, 1017
AlwNI CAGNNNCTG 2 cut(s) 938, 1076
Ama87I CYCGRG 1 cut(s) 977
AoxI GGCC 5 cut(s) 3, 156, 517, 672, 947
ApeKI GCWGC 1 cut(s) 831
ApoI RAATTY 4 cut(s) 236, 255, 497, 1066
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 7 cut(s) 156, 310, 517, 538, 673, 856, 948
AsuC2I CCSGG 1 cut(s) 611
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 3 cut(s) 310, 538, 856
AxyI CCTNAGG 1 cut(s) 792
Bbv12I GWGCWC 1 cut(s) 904
BbvI GCAGC 1 cut(s) 843
BccI CCATC 7 cut(s) 245, 321, 380, 481, 758, 817, 886
BceAI ACGGC 1 cut(s) 962
BcgI CGANNNNNNTGC 2 cut(s) 1030, 1064
BciVI GTATCC 2 cut(s) 468, 1002
BcnI CCSGG 1 cut(s) 611
BcoDI GTCTC 4 cut(s) 193, 336, 402, 1110
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 768
BfuAI ACCTGC 1 cut(s) 1025
BfuI GTATCC 2 cut(s) 468, 1002
BisI GCNGC 1 cut(s) 832
BlsI GCNGC 1 cut(s) 833
Bme1390I CCNGG 1 cut(s) 611
Bme18I GGWCC 3 cut(s) 310, 538, 856
BmeT110I CYCGRG 1 cut(s) 977
BmgBI CACGTC 1 cut(s) 718
BmgT120I GGNCC 7 cut(s) 156, 310, 517, 538, 673, 856, 948
BmiI GGNNCC 6 cut(s) 157, 518, 539, 675, 858, 1019
BmrFI CCNGG 1 cut(s) 611
BoxI GACNNNNGTC 2 cut(s) 635, 777
BplI GAGNNNNNCTC 2 cut(s) 1037, 1069
BpmI CTGGAG 1 cut(s) 426
BpuEI CTTGAG 2 cut(s) 563, 1014
BpuMI CCSGG 1 cut(s) 611
BsaAI YACGTR 1 cut(s) 670
BsaBI GATNNNNATC 1 cut(s) 1077
BsaI GGTCTC 1 cut(s) 402
BsaJI CCNNGG 4 cut(s) 30, 426, 580, 610
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 485, 586, 670
Bse1I ACTGG 4 cut(s) 231, 282, 527, 760
Bse21I CCTNAGG 1 cut(s) 792
Bse8I GATNNNNATC 1 cut(s) 1077
BseDI CCNNGG 4 cut(s) 30, 426, 580, 610
BseJI GATNNNNATC 1 cut(s) 1077
BseLI CCNNNNNNNGG 4 cut(s) 251, 485, 586, 670
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 4 cut(s) 231, 282, 527, 760
BseRI GAGGAG 1 cut(s) 468
BseXI GCAGC 1 cut(s) 843
BseYI CCCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 5 cut(s) 5, 158, 519, 674, 949
BsiHKAI GWGCWC 1 cut(s) 904
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 1 cut(s) 610
BslFI GGGAC 2 cut(s) 551, 643
BslI CCNNNNNNNGG 4 cut(s) 251, 485, 586, 670
BsmAI GTCTC 4 cut(s) 193, 336, 402, 1110
BsmFI GGGAC 2 cut(s) 551, 643
BsnI GGCC 5 cut(s) 5, 158, 519, 674, 949
Bso31I GGTCTC 1 cut(s) 402
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 1 cut(s) 904
Bsp143I GATC 9 cut(s) 10, 651, 763, 839, 928, 1009, 1047, 1078, 1103
BspANI GGCC 5 cut(s) 5, 158, 519, 674, 949
BspCNI CTCAG 1 cut(s) 784
BspFNI CGCG 1 cut(s) 133
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 6 cut(s) 157, 518, 539, 675, 858, 1019
BspMI ACCTGC 1 cut(s) 1025
BspPI GGATC 4 cut(s) 646, 758, 923, 1017
BspTNI GGTCTC 1 cut(s) 402
BsrI ACTGG 4 cut(s) 231, 282, 527, 760
BssECI CCNNGG 4 cut(s) 30, 426, 580, 610
BssMI GATC 9 cut(s) 10, 651, 763, 839, 928, 1009, 1047, 1078, 1103
BssT1I CCWWGG 2 cut(s) 30, 580
Bst4CI ACNGT 5 cut(s) 109, 120, 187, 436, 1022
Bst6I CTCTTC 2 cut(s) 754, 981
BstBAI YACGTR 1 cut(s) 670
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 2 cut(s) 742, 792
BstDSI CCRYGG 1 cut(s) 426
BstENI CCTNNNNNAGG 1 cut(s) 584
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 9 cut(s) 13, 654, 766, 842, 931, 1012, 1050, 1081, 1106
BstMAI GTCTC 4 cut(s) 193, 336, 402, 1110
BstMBI GATC 9 cut(s) 10, 651, 763, 839, 928, 1009, 1047, 1078, 1103
BstPAI GACNNNNGTC 2 cut(s) 635, 777
BstSCI CCNGG 1 cut(s) 609
BstSFI CTRYAG 1 cut(s) 768
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 843
BstX2I RGATCY 2 cut(s) 651, 763
BstYI RGATCY 2 cut(s) 651, 763
Bsu36I CCTNAGG 1 cut(s) 792
BsuI GTATCC 2 cut(s) 468, 1002
BsuRI GGCC 5 cut(s) 5, 158, 519, 674, 949
BtgI CCRYGG 1 cut(s) 426
BtrI CACGTC 1 cut(s) 718
BtsIMutI CAGTG 6 cut(s) 116, 238, 289, 441, 520, 753
BveI ACCTGC 1 cut(s) 1025
Cac8I GCNNGC 1 cut(s) 549
CaiI CAGNNNCTG 2 cut(s) 938, 1076
CciI TCATGA 1 cut(s) 271
Cfr13I GGNCC 7 cut(s) 156, 310, 517, 538, 673, 856, 948
Csp6I GTAC 1 cut(s) 432
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviAII CATG 2 cut(s) 272, 1042
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 2 cut(s) 742, 792
DpnI GATC 9 cut(s) 12, 653, 765, 841, 930, 1011, 1049, 1080, 1105
DpnII GATC 9 cut(s) 10, 651, 763, 839, 928, 1009, 1047, 1078, 1103
Eam1104I CTCTTC 2 cut(s) 754, 981
EarI CTCTTC 2 cut(s) 754, 981
Eco130I CCWWGG 2 cut(s) 30, 580
Eco31I GGTCTC 1 cut(s) 402
Eco47I GGWCC 3 cut(s) 310, 538, 856
Eco57I CTGAAG 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 792
Eco88I CYCGRG 1 cut(s) 977
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 538
EcoRI GAATTC 2 cut(s) 255, 497
EcoT14I CCWWGG 2 cut(s) 30, 580
ErhI CCWWGG 2 cut(s) 30, 580
FaeI CATG 2 cut(s) 275, 1045
FaqI GGGAC 2 cut(s) 551, 643
FatI CATG 2 cut(s) 271, 1041
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 1 cut(s) 832
Fsp4HI GCNGC 1 cut(s) 832
FspBI CTAG 1 cut(s) 482
GluI GCNGC 1 cut(s) 832
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 5 cut(s) 5, 158, 519, 674, 949
HapII CCGG 1 cut(s) 610
Hin1II CATG 2 cut(s) 275, 1045
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 7 cut(s) 163, 293, 631, 935, 980, 1027, 1052
HpaII CCGG 1 cut(s) 610
Hpy166II GTNNAC 4 cut(s) 528, 607, 772, 856
Hpy188I TCNGA 9 cut(s) 10, 298, 844, 875, 940, 985, 1072, 1083, 1108
Hpy188III TCNNGA 8 cut(s) 144, 272, 405, 693, 791, 907, 932, 1101
Hpy8I GTNNAC 4 cut(s) 528, 607, 772, 856
HpyAV CCTTC 4 cut(s) 46, 407, 456, 1008
HpyCH4III ACNGT 5 cut(s) 109, 120, 187, 436, 1022
HpyCH4IV ACGT 2 cut(s) 669, 717
HpyCH4V TGCA 1 cut(s) 551
HpyF3I CTNAG 2 cut(s) 742, 792
HpySE526I ACGT 2 cut(s) 669, 717
Hsp92II CATG 2 cut(s) 275, 1045
Kzo9I GATC 9 cut(s) 10, 651, 763, 839, 928, 1009, 1047, 1078, 1103
LmnI GCTCC 3 cut(s) 217, 475, 793
Lsp1109I GCAGC 1 cut(s) 843
MaeI CTAG 1 cut(s) 482
MaeII ACGT 2 cut(s) 669, 717
MaeIII GTNAC 3 cut(s) 284, 463, 713
MalI GATC 9 cut(s) 12, 653, 765, 841, 930, 1011, 1049, 1080, 1105
MboI GATC 9 cut(s) 10, 651, 763, 839, 928, 1009, 1047, 1078, 1103
MboII GAAGA 7 cut(s) 251, 422, 441, 771, 849, 857, 998
MflI RGATCY 2 cut(s) 651, 763
MhlI GDGCHC 1 cut(s) 904
MluCI AATT 6 cut(s) 198, 236, 255, 497, 688, 1066
MlyI GAGTC 4 cut(s) 625, 989, 1021, 1046
MnlI CCTC 8 cut(s) 16, 134, 386, 489, 580, 787, 912, 1000
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 6 cut(s) 201, 369, 533, 645, 816, 893
MspI CCGG 1 cut(s) 610
MspR9I CCNGG 1 cut(s) 611
MvnI CGCG 1 cut(s) 133
NciI CCSGG 1 cut(s) 611
NdeII GATC 9 cut(s) 10, 651, 763, 839, 928, 1009, 1047, 1078, 1103
NlaIII CATG 2 cut(s) 275, 1045
NlaIV GGNNCC 6 cut(s) 157, 518, 539, 675, 858, 1019
NmuCI GTSAC 2 cut(s) 284, 713
PaeR7I CTCGAG 1 cut(s) 977
PagI TCATGA 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 1018
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 3 cut(s) 163, 293, 935
PkrI GCNGC 1 cut(s) 833
PleI GAGTC 4 cut(s) 625, 988, 1021, 1046
PpsI GAGTC 4 cut(s) 625, 988, 1021, 1046
Ppu21I YACGTR 1 cut(s) 670
PpuMI RGGWCCY 1 cut(s) 538
PshAI GACNNNNGTC 2 cut(s) 635, 777
Psp5II RGGWCCY 1 cut(s) 538
PspFI CCCAGC 1 cut(s) 152
PspN4I GGNNCC 6 cut(s) 157, 518, 539, 675, 858, 1019
PspPI GGNCC 7 cut(s) 156, 310, 517, 538, 673, 856, 948
PspPPI RGGWCCY 1 cut(s) 538
PspXI VCTCGAGB 1 cut(s) 977
PstNI CAGNNNCTG 2 cut(s) 938, 1076
PsuI RGATCY 2 cut(s) 651, 763
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
SaqAI TTAA 6 cut(s) 201, 369, 533, 645, 816, 893
SatI GCNGC 1 cut(s) 832
Sau3AI GATC 9 cut(s) 10, 651, 763, 839, 928, 1009, 1047, 1078, 1103
Sau96I GGNCC 7 cut(s) 156, 310, 517, 538, 673, 856, 948
SchI GAGTC 4 cut(s) 625, 989, 1021, 1046
ScrFI CCNGG 1 cut(s) 611
SduI GDGCHC 1 cut(s) 904
SfcI CTRYAG 1 cut(s) 768
Sfr274I CTCGAG 1 cut(s) 977
SinI GGWCC 3 cut(s) 310, 538, 856
SlaI CTCGAG 1 cut(s) 977
SmlI CTYRAG 3 cut(s) 542, 977, 1029
SmoI CTYRAG 3 cut(s) 542, 977, 1029
Sse9I AATT 6 cut(s) 198, 236, 255, 497, 688, 1066
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 609
StyI CCWWGG 2 cut(s) 30, 580
TaaI ACNGT 5 cut(s) 109, 120, 187, 436, 1022
TaiI ACGT 2 cut(s) 672, 720
TaqI TCGA 4 cut(s) 211, 978, 1012, 1050
TasI AATT 6 cut(s) 198, 236, 255, 497, 688, 1066
TfiI GAWTC 3 cut(s) 163, 293, 935
Tru1I TTAA 6 cut(s) 201, 369, 533, 645, 816, 893
Tru9I TTAA 6 cut(s) 201, 369, 533, 645, 816, 893
TscAI CASTG 6 cut(s) 123, 238, 289, 441, 527, 760
TseFI GTSAC 2 cut(s) 284, 713
TseI GCWGC 1 cut(s) 831
Tsp45I GTSAC 2 cut(s) 284, 713
TspDTI ATGAA 4 cut(s) 260, 354, 441, 720
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 6 cut(s) 123, 238, 289, 441, 527, 760
VpaK11BI GGWCC 3 cut(s) 310, 538, 856
XagI CCTNNNNNAGG 1 cut(s) 584
XapI RAATTY 4 cut(s) 236, 255, 497, 1066
XhoI CTCGAG 1 cut(s) 977
XmiI GTMKAC 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.